Rh2BG305400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018680
Physical Location & Seq
Forward (+)
35511990 .. 35512910
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG305400.1

Sequence Viewer

Length: 921 bp
ATGCGTTTATTGCAAGAGCAAATTGGGAAAAAATTTACACACGACATTTTCCTTTTGATACAGGATCAAATTAGGTGTGAATCCCGATTTTTCATGCAAGATGAATTTCATTTCCCTGTATTAGGATCCTCAATAGTGACTCTTACACAGTACGGTCAACCGCATAGGAAGTGGAACGTTACATATCGGAACAACAATGACAACCCCACACTGAGTTGCACGTGCAAGTTGTTTGAGTCTGATGGAATTCCTTGCTGTCATATATTTACTGTGATGAAAGTGAAGCAGATAACAACGTTTCCAGAGTCTTTGGTGACAATGAGGTGGACTAAAGATGCGACGACTACGAATGTCAAAACCCGACCTACCAACGGTGAGATACCAGACCATTCCCTTCGCCTAGCAAGGTACGGTGAGATGATGGCAGAATGTACACAGACTTGTTTCAGGGCATCATTTTCCGAAGACGCTTACTATGAAACTATTGAATCAATGAGGCGTATGTCTATTAGGGCGAGGACATATCCAGTTTATGAAGAGCAAGATGATACAACACATAACAGTCTTGATGGACTTCACGAGAATGTTGTCAAGGATCCTACAATTTGCAAATCGAAAGGTACTCGAGCAAATCCCCCCACTGTTGTCGATGATGGCAAAGTAGGTCTTACCAAAGGCGCTATTAAATGTGGTAAATGTCACCGGGCCACAATGTGCGAACGTGCAACAAGGCCGCTAATGATGCCAAAGGATGGGGAAAATCACATCATGACAATGTTGTTTTTGATTCGTCCGCTGACCACACCAGTCCCGGAGAGGAGGAATACGAGACTACTAGTAGTAGCGATAATACTAATTCTCTGCTGCACCACAATGAAGAAGCTCGGGATTTTGCCTTTTTTGGGGGGTATGACAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

306

Amino Acids

34.99

Weight (kDa)

8.85

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 60 - 92 1.2e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 752
AciI CCGC 3 cut(s) 161, 734, 794
AclI AACGTT 2 cut(s) 177, 296
AclWI GGATC 5 cut(s) 72, 120, 133, 590, 603
AcsI RAATTY 3 cut(s) 32, 104, 246
AcvI CACGTG 1 cut(s) 222
AdeI CACNNNGTG 1 cut(s) 714
AfaI GTAC 4 cut(s) 152, 410, 433, 622
AfiI CCNNNNNNNGG 4 cut(s) 122, 371, 752, 902
AgsI TTSAA 1 cut(s) 488
AhlI ACTAGT 1 cut(s) 835
AluBI AGCT 1 cut(s) 883
AluI AGCT 1 cut(s) 883
Alw26I GTCTC 1 cut(s) 823
AlwI GGATC 5 cut(s) 72, 120, 133, 590, 603
Ama87I CYCGRG 2 cut(s) 624, 884
AoxI GGCC 2 cut(s) 705, 731
ApeKI GCWGC 1 cut(s) 864
ApoI RAATTY 3 cut(s) 32, 104, 246
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 705
AsuC2I CCSGG 2 cut(s) 704, 812
AsuHPI GGTGA 4 cut(s) 325, 386, 425, 692
AvaI CYCGRG 2 cut(s) 624, 884
BamHI GGATCC 2 cut(s) 125, 595
BauI CACGAG 1 cut(s) 578
BbrPI CACGTG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 851
BccI CCATC 5 cut(s) 236, 415, 563, 647, 746
BcnI CCSGG 2 cut(s) 704, 812
BcoDI GTCTC 1 cut(s) 823
BcuI ACTAGT 1 cut(s) 835
BfaI CTAG 2 cut(s) 401, 836
BfoI RGCGCY 1 cut(s) 681
BisI GCNGC 2 cut(s) 734, 865
BlsI GCNGC 2 cut(s) 735, 866
Bme1390I CCNGG 2 cut(s) 704, 812
BmeT110I CYCGRG 2 cut(s) 624, 884
BmgT120I GGNCC 1 cut(s) 705
BmiI GGNNCC 2 cut(s) 127, 597
BmrFI CCNGG 2 cut(s) 704, 812
BmsI GCATC 3 cut(s) 325, 461, 732
BpiI GAAGAC 1 cut(s) 471
BpuMI CCSGG 2 cut(s) 704, 812
BsaAI YACGTR 1 cut(s) 222
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 371, 752, 902
Bse1I ACTGG 2 cut(s) 527, 806
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 4 cut(s) 122, 371, 752, 902
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 527, 806
BseRI GAGGAG 1 cut(s) 832
BseXI GCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 850
BshFI GGCC 2 cut(s) 707, 733
BsiHKCI CYCGRG 2 cut(s) 624, 884
BsiSI CCGG 2 cut(s) 703, 812
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 4 cut(s) 122, 371, 752, 902
BsmAI GTCTC 1 cut(s) 823
BsmFI GGGAC 1 cut(s) 794
BsnI GGCC 2 cut(s) 707, 733
BsoBI CYCGRG 2 cut(s) 624, 884
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 3 cut(s) 64, 125, 595
BspACI CCGC 3 cut(s) 161, 734, 794
BspANI GGCC 2 cut(s) 707, 733
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 2 cut(s) 127, 597
BspPI GGATC 5 cut(s) 72, 120, 133, 590, 603
BspQI GCTCTTC 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 431
BsrI ACTGG 2 cut(s) 527, 806
BssMI GATC 3 cut(s) 64, 125, 595
BssSI CACGAG 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 578
Bst4CI ACNGT 7 cut(s) 150, 155, 271, 374, 413, 563, 643
Bst6I CTCTTC 1 cut(s) 531
BstAUI TGTACA 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 212
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 757
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 3 cut(s) 67, 128, 598
BstMAI GTCTC 1 cut(s) 823
BstMBI GATC 3 cut(s) 64, 125, 595
BstMWI GCNNNNNNNGC 2 cut(s) 10, 742
BstSCI CCNGG 2 cut(s) 702, 810
BstV1I GCAGC 1 cut(s) 851
BstV2I GAAGAC 1 cut(s) 471
BstX2I RGATCY 2 cut(s) 125, 595
BstYI RGATCY 2 cut(s) 125, 595
BsuRI GGCC 2 cut(s) 707, 733
BtsCI GGATG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 209, 639
CciI TCATGA 1 cut(s) 768
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 1 cut(s) 705
CseI GACGC 1 cut(s) 476
Csp6I GTAC 4 cut(s) 151, 409, 432, 621
CviAII CATG 2 cut(s) 94, 769
CviJI RGCY 3 cut(s) 707, 733, 883
CviKI_1 RGCY 3 cut(s) 707, 733, 883
CviQI GTAC 4 cut(s) 151, 409, 432, 621
DdeI CTNAG 1 cut(s) 212
DpnI GATC 3 cut(s) 66, 127, 597
DpnII GATC 3 cut(s) 64, 125, 595
DraIII CACNNNGTG 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco72I CACGTG 1 cut(s) 222
Eco88I CYCGRG 2 cut(s) 624, 884
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 246
FaeI CATG 2 cut(s) 97, 772
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 1 cut(s) 794
FatI CATG 2 cut(s) 93, 768
Fnu4HI GCNGC 2 cut(s) 734, 865
FokI GGATG 1 cut(s) 764
Fsp4HI GCNGC 2 cut(s) 734, 865
FspBI CTAG 2 cut(s) 401, 836
GlaI GCGC 1 cut(s) 679
GluI GCNGC 2 cut(s) 734, 865
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 2 cut(s) 707, 733
HapII CCGG 2 cut(s) 703, 812
HgaI GACGC 1 cut(s) 476
HhaI GCGC 1 cut(s) 680
Hin1II CATG 2 cut(s) 97, 772
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 158
HindII GTYRAC 1 cut(s) 158
HinfI GANTC 6 cut(s) 80, 139, 236, 305, 488, 787
HpaII CCGG 2 cut(s) 703, 812
HphI GGTGA 4 cut(s) 325, 386, 425, 692
Hpy166II GTNNAC 3 cut(s) 158, 327, 434
Hpy188I TCNGA 3 cut(s) 189, 241, 463
Hpy188III TCNNGA 6 cut(s) 84, 302, 566, 578, 769, 886
Hpy8I GTNNAC 3 cut(s) 158, 327, 434
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 7 cut(s) 150, 155, 271, 374, 413, 563, 643
HpyCH4IV ACGT 4 cut(s) 177, 221, 296, 721
HpyCH4V TGCA 7 cut(s) 13, 97, 219, 225, 609, 725, 867
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 742
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 4 cut(s) 177, 221, 296, 721
Hsp92II CATG 2 cut(s) 97, 772
HspAI GCGC 1 cut(s) 678
Kzo9I GATC 3 cut(s) 64, 125, 595
LguI GCTCTTC 1 cut(s) 531
LpnPI CCDG 9 cut(s) 47, 129, 315, 396, 433, 540, 716, 819, 825
Lsp1109I GCAGC 1 cut(s) 851
LweI GCATC 3 cut(s) 325, 461, 732
MaeI CTAG 2 cut(s) 401, 836
MaeII ACGT 4 cut(s) 177, 221, 296, 721
MaeIII GTNAC 4 cut(s) 136, 178, 313, 698
MalI GATC 3 cut(s) 66, 127, 597
MboI GATC 3 cut(s) 64, 125, 595
MboII GAAGA 3 cut(s) 476, 548, 889
MflI RGATCY 2 cut(s) 125, 595
MluCI AATT 7 cut(s) 21, 32, 69, 104, 246, 603, 855
MlyI GAGTC 3 cut(s) 133, 245, 314
MnlI CCTC 6 cut(s) 139, 315, 489, 510, 810, 813
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 3 cut(s) 582, 773, 872
MspA1I CMGCKG 1 cut(s) 796
MspI CCGG 2 cut(s) 703, 812
MspR9I CCNGG 2 cut(s) 704, 812
MwoI GCNNNNNNNGC 2 cut(s) 10, 742
NciI CCSGG 2 cut(s) 704, 812
NdeII GATC 3 cut(s) 64, 125, 595
NlaIII CATG 2 cut(s) 97, 772
NlaIV GGNNCC 2 cut(s) 127, 597
NmuCI GTSAC 3 cut(s) 136, 313, 698
PaeR7I CTCGAG 1 cut(s) 624
PagI TCATGA 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 80, 488, 787
PflMI CCANNNNNTGG 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 810
PkrI GCNGC 2 cut(s) 735, 866
PleI GAGTC 3 cut(s) 133, 244, 313
PmaCI CACGTG 1 cut(s) 222
PmlI CACGTG 1 cut(s) 222
PpsI GAGTC 3 cut(s) 133, 244, 313
Ppu21I YACGTR 1 cut(s) 222
Psp1406I AACGTT 2 cut(s) 177, 296
PspCI CACGTG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 127, 597
PspPI GGNCC 1 cut(s) 705
PspXI VCTCGAGB 1 cut(s) 624
PsuI RGATCY 2 cut(s) 125, 595
RsaI GTAC 4 cut(s) 152, 410, 433, 622
RsaNI GTAC 4 cut(s) 151, 409, 432, 621
RseI CAYNNNNRTG 3 cut(s) 582, 773, 872
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 2 cut(s) 734, 865
Sau3AI GATC 3 cut(s) 64, 125, 595
Sau96I GGNCC 1 cut(s) 705
SchI GAGTC 3 cut(s) 133, 245, 314
ScrFI CCNGG 2 cut(s) 704, 812
SfaNI GCATC 3 cut(s) 325, 461, 732
Sfr274I CTCGAG 1 cut(s) 624
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 3 cut(s) 582, 773, 872
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
SpeI ACTAGT 1 cut(s) 835
Sse9I AATT 7 cut(s) 21, 32, 69, 104, 246, 603, 855
SsiI CCGC 3 cut(s) 161, 734, 794
SspMI CTAG 2 cut(s) 401, 836
StyD4I CCNGG 2 cut(s) 702, 810
TaaI ACNGT 7 cut(s) 150, 155, 271, 374, 413, 563, 643
TaiI ACGT 4 cut(s) 180, 224, 299, 724
TaqI TCGA 3 cut(s) 614, 625, 648
TasI AATT 7 cut(s) 21, 32, 69, 104, 246, 603, 855
TatI WGTACW 1 cut(s) 431
TauI GCSGC 1 cut(s) 736
TfiI GAWTC 3 cut(s) 80, 488, 787
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 2 cut(s) 216, 646
TseFI GTSAC 3 cut(s) 136, 313, 698
TseI GCWGC 1 cut(s) 864
Tsp45I GTSAC 3 cut(s) 136, 313, 698
TspDTI ATGAA 7 cut(s) 82, 98, 117, 290, 492, 549, 890
TspRI CASTG 2 cut(s) 216, 646
Van91I CCANNNNNTGG 1 cut(s) 752
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 3 cut(s) 32, 104, 246
XhoI CTCGAG 1 cut(s) 624
XspI CTAG 2 cut(s) 401, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.