Rh7CG048700

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018680
Physical Location & Seq
Reverse (-)
3418803 .. 3423264
4462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG048700.1

Sequence Viewer

Length: 714 bp
ATGAAAGTGAAGCAGATAACAATGTTTCCTGAGTCTTTGGTGACAAAGAGGTGGACTAAAGATGCGACGACTATCAATGAAGAAACCCGACCTAGCAATGGAGTGATTTCCGACAATTCACTTCGCCTGGCAAGGTACGGTGAGATGATGACAGAATGTACGCAGACTTGTTTCAGAGCGTTATTTTCCGATGACACTTACTATGAAACAATTGAATCCATGAGGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCATGAAGACCAAGAGGATACTGCACATAACAGTCTGGACGGACTTCACGAGAATGTTGTCAAGGATCCTAACATTTGCATATCAAAAGGTACTCGAACAAATCCCCCCACTGTTGTTGATGATGGCAAAGCAGGGCAGACCAAAGGCGCTATTAAATGTGGTAACTGTCACCAACCGGGCCACAATGTTCGAACATGCGACAAAGCCACTAATGATGGTAGAGGGGGCAAATCACATGGTGACAGTGTCGATATACCTTCCAATGGTGACCACACCTGTCCCGATGAGGAGGAATACGAGTTTGTTGCTAGTAGCCGGAATACTAACTCTTTGCTGCACCACAGTGAAGAAGCCCCTGATTTTGCCTTCTTTGGGGGGTACGACTCCATAATACCCTCCGTGTCTACTTCCAGATCACATGAAAGTTCCAACTCCGGGGAACCCGAGGGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

237

Amino Acids

26.22

Weight (kDa)

5.36

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 662
AclWI GGATC 2 cut(s) 317, 330
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 4 cut(s) 137, 160, 349, 638
AfiI CCNNNNNNNGG 4 cut(s) 98, 521, 630, 693
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 600
AlwI GGATC 2 cut(s) 317, 330
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 2 cut(s) 435, 694
AsuHPI GGTGA 5 cut(s) 52, 152, 419, 509, 536
AsuII TTCGAA 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 701
BamHI GGATCC 1 cut(s) 322
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 579
BccI CCATC 2 cut(s) 374, 467
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 268
BcnI CCSGG 2 cut(s) 435, 694
BfaI CTAG 2 cut(s) 93, 567
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 1 cut(s) 593
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 3 cut(s) 128, 435, 694
BmeT110I CYCGRG 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 2 cut(s) 324, 699
BmrFI CCNGG 3 cut(s) 128, 435, 694
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 448
BpuMI CCSGG 2 cut(s) 435, 694
BsaJI CCNNGG 2 cut(s) 693, 702
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 521, 630, 693
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 693, 702
BseLI CCNNNNNNNGG 4 cut(s) 98, 521, 630, 693
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 259, 560
BseXI GCAGC 1 cut(s) 579
BsgI GTGCAG 2 cut(s) 264, 578
BshFI GGCC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 3 cut(s) 434, 574, 693
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 4 cut(s) 98, 521, 630, 693
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 701
Bsp119I TTCGAA 1 cut(s) 448
Bsp143I GATC 2 cut(s) 322, 671
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 324, 699
BspPI GGATC 2 cut(s) 317, 330
BspT104I TTCGAA 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 2 cut(s) 693, 702
BssMI GATC 2 cut(s) 322, 671
BssSI CACGAG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 6 cut(s) 140, 290, 370, 425, 503, 602
BstBI TTCGAA 1 cut(s) 448
BstDEI CTNAG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 524
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 2 cut(s) 325, 674
BstMBI GATC 2 cut(s) 322, 671
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 456
BstPI GGTNACC 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 126, 433, 692
BstV1I GCAGC 1 cut(s) 579
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 366, 508, 607
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 436
Csp6I GTAC 4 cut(s) 136, 159, 348, 637
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 5 cut(s) 220, 260, 453, 494, 677
CviJI RGCY 4 cut(s) 438, 464, 573, 611
CviKI_1 RGCY 4 cut(s) 438, 464, 573, 611
CviQI GTAC 4 cut(s) 136, 159, 348, 637
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 324, 673
DpnII GATC 2 cut(s) 322, 671
DraIII CACNNNGTG 1 cut(s) 497
Eco32I GATATC 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 701
Eco91I GGTNACC 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 126
EcoRV GATATC 1 cut(s) 251
FaeI CATG 5 cut(s) 223, 263, 456, 497, 680
FaqI GGGAC 1 cut(s) 522
FatI CATG 5 cut(s) 219, 259, 452, 493, 676
FblI GTMKAC 1 cut(s) 662
Fnu4HI GCNGC 1 cut(s) 593
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 2 cut(s) 93, 567
GlaI GCGC 1 cut(s) 406
GluI GCNGC 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 1 cut(s) 438
HapII CCGG 3 cut(s) 434, 574, 693
HhaI GCGC 1 cut(s) 407
Hin1II CATG 5 cut(s) 223, 263, 456, 497, 680
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HinfI GANTC 3 cut(s) 32, 215, 641
HpaII CCGG 3 cut(s) 434, 574, 693
HphI GGTGA 5 cut(s) 52, 152, 419, 509, 536
Hpy166II GTNNAC 2 cut(s) 54, 663
Hpy188I TCNGA 3 cut(s) 112, 176, 190
Hpy188III TCNNGA 6 cut(s) 29, 260, 293, 305, 539, 669
Hpy8I GTNNAC 2 cut(s) 54, 663
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 525, 634
HpyCH4III ACNGT 6 cut(s) 140, 290, 370, 425, 503, 602
HpyCH4V TGCA 3 cut(s) 281, 336, 595
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 5 cut(s) 223, 263, 456, 497, 680
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 322, 671
Lsp1109I GCAGC 1 cut(s) 579
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 93, 567
MaeIII GTNAC 5 cut(s) 40, 419, 425, 497, 524
MalI GATC 2 cut(s) 324, 673
MboI GATC 2 cut(s) 322, 671
MboII GAAGA 3 cut(s) 92, 275, 617
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 115, 210
MlyI GAGTC 2 cut(s) 41, 635
MmeI TCCRAC 2 cut(s) 135, 711
MnlI CCTC 9 cut(s) 42, 216, 237, 265, 473, 538, 541, 664, 697
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 2 cut(s) 309, 600
MspI CCGG 3 cut(s) 434, 574, 693
MspR9I CCNGG 3 cut(s) 128, 435, 694
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 1 cut(s) 128
NciI CCSGG 2 cut(s) 435, 694
NdeII GATC 2 cut(s) 322, 671
NlaIII CATG 5 cut(s) 223, 263, 456, 497, 680
NlaIV GGNNCC 2 cut(s) 324, 699
NmuCI GTSAC 4 cut(s) 40, 425, 497, 524
NspI RCATGY 1 cut(s) 456
NspV TTCGAA 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 600
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PfeI GAWTC 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 594
PleI GAGTC 2 cut(s) 40, 635
PpsI GAGTC 2 cut(s) 40, 635
Psp6I CCWGG 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 324, 699
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 503
RsaI GTAC 4 cut(s) 137, 160, 349, 638
RsaNI GTAC 4 cut(s) 136, 159, 348, 637
RseI CAYNNNNRTG 2 cut(s) 309, 600
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 2 cut(s) 322, 671
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 2 cut(s) 41, 635
ScrFI CCNGG 3 cut(s) 128, 435, 694
SetI ASST 6 cut(s) 53, 94, 137, 349, 517, 536
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 309, 600
Sse9I AATT 2 cut(s) 115, 210
SspMI CTAG 2 cut(s) 93, 567
StyD4I CCNGG 3 cut(s) 126, 433, 692
TaaI ACNGT 6 cut(s) 140, 290, 370, 425, 503, 602
TaqI TCGA 3 cut(s) 352, 448, 507
TasI AATT 2 cut(s) 115, 210
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 3 cut(s) 373, 508, 607
TseFI GTSAC 4 cut(s) 40, 425, 497, 524
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 4 cut(s) 40, 425, 497, 524
TspDTI ATGAA 6 cut(s) 17, 93, 219, 248, 276, 693
TspGWI ACGGA 2 cut(s) 312, 646
TspRI CASTG 3 cut(s) 373, 508, 607
Tth111I GACNNNGTC 1 cut(s) 503
XceI RCATGY 1 cut(s) 456
XmiI GTMKAC 1 cut(s) 662
XspI CTAG 2 cut(s) 93, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.