Rh2DG335300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018680
Physical Location & Seq
Forward (+)
43133310 .. 43134244
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG335300.1

Sequence Viewer

Length: 642 bp
ATGACTGGTCTACAAGATGACCATTGGGTTATCGGCATGTTCAACAAGCGAGAGCGATGGGCTGAGGCTTTCTTCAAGGAAGATTTCTTTGCTAGTGTTCGTTCCACACAGAGATGTGAACAAATGCATCGTGATCTAAAGACTGGAATGGGTAAACAGATGAGGTTTTATGAGGTGTTGCCTCAGTTGGATAAGACAATGGATCGAATACGGGAAATGGTGTTATATGATGATTTCGTTTCTATCAATGCAAGTCCAGTTATTGGCGACCACATGCGTTTATTGCAAGAGCAAATTGGGAAAAAATTTACACAAGACATTTTCCTTTTGATACAGGATCAAATTAGCAACGGTGAGATACCAGACCATTCCCTTCGCCTGGCAATGTATGATGAGATGATGGCAGAATGTACACAGACTTGTTTCAGGACGTCATTTTCTGAAGACTCTTACTATGAAACTATTGAATCCATGAGGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCATGAAGACCAAGATGATACAACACATAACAGTCTTGATGGACTTCACGAGAATGTTGTCAAGGATCCTACAATTTGCAAATCAAAAGGTACTCGAGTAAATCCCCCACTGTTGTCAATGATGGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

213

Amino Acids

25.08

Weight (kDa)

5.66

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 263
AccI GTMKAC 1 cut(s) 10
AclWI GGATC 4 cut(s) 210, 345, 569, 582
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 2 cut(s) 412, 601
AfiI CCNNNNNNNGG 2 cut(s) 263, 379
AgsI TTSAA 3 cut(s) 43, 76, 467
AjnI CCWGG 1 cut(s) 378
AlwI GGATC 4 cut(s) 210, 345, 569, 582
Ama87I CYCGRG 1 cut(s) 603
ApoI RAATTY 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 603
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BamHI GGATCC 1 cut(s) 574
BauI CACGAG 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 450, 522
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 4 cut(s) 51, 394, 542, 625
BciT130I CCWGG 1 cut(s) 380
BfaI CTAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 603
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 2 cut(s) 450, 522
Bpu10I CCTNAGC 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 431
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 379
Bse1I ACTGG 4 cut(s) 10, 148, 257, 506
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 263, 379
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 54, 197
BseNI ACTGG 4 cut(s) 10, 148, 257, 506
BseRI GAGGAG 1 cut(s) 511
BsiHKCI CYCGRG 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 263, 379
BsoBI CYCGRG 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 410
Bsp143I GATC 4 cut(s) 133, 202, 337, 574
BspCNI CTCAG 2 cut(s) 55, 196
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 4 cut(s) 210, 345, 569, 582
BsrDI GCAATG 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 410
BsrI ACTGG 4 cut(s) 10, 148, 257, 506
BssMI GATC 4 cut(s) 133, 202, 337, 574
BssNI GRCGYC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 557
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 353, 542, 621
BstACI GRCGYC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 410
BstDEI CTNAG 2 cut(s) 63, 183
BstKTI GATC 4 cut(s) 136, 205, 340, 577
BstMBI GATC 4 cut(s) 133, 202, 337, 574
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 40, 277
BstSCI CCNGG 1 cut(s) 378
BstV2I GAAGAC 2 cut(s) 450, 522
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 511
Csp6I GTAC 2 cut(s) 411, 600
CviAII CATG 4 cut(s) 37, 274, 472, 512
CviJI RGCY 2 cut(s) 62, 68
CviKI_1 RGCY 2 cut(s) 62, 68
CviQI GTAC 2 cut(s) 411, 600
DdeI CTNAG 2 cut(s) 63, 183
DpnI GATC 4 cut(s) 135, 204, 339, 576
DpnII GATC 4 cut(s) 133, 202, 337, 574
Eco32I GATATC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 503
EcoT22I ATGCAT 1 cut(s) 129
FaeI CATG 4 cut(s) 40, 277, 475, 515
FatI CATG 4 cut(s) 36, 273, 471, 511
FblI GTMKAC 1 cut(s) 10
FspBI CTAG 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 4 cut(s) 40, 277, 475, 515
HinfI GANTC 2 cut(s) 446, 467
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 4 cut(s) 11, 119, 155, 413
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 5 cut(s) 131, 427, 512, 545, 557
Hpy8I GTNNAC 4 cut(s) 11, 119, 155, 413
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 3 cut(s) 353, 542, 621
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 4 cut(s) 127, 251, 286, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 63, 183
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 4 cut(s) 40, 277, 475, 515
Kzo9I GATC 4 cut(s) 133, 202, 337, 574
LpnPI CCDG 8 cut(s) 129, 270, 320, 365, 375, 392, 412, 519
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 431
MalI GATC 4 cut(s) 135, 204, 339, 576
MboI GATC 4 cut(s) 133, 202, 337, 574
MboII GAAGA 4 cut(s) 64, 92, 455, 527
MflI RGATCY 1 cut(s) 574
MluCI AATT 4 cut(s) 294, 305, 342, 582
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 6 cut(s) 58, 156, 166, 192, 468, 489
Mph1103I ATGCAT 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 112, 561
MspR9I CCNGG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 4 cut(s) 133, 202, 337, 574
NlaIII CATG 4 cut(s) 40, 277, 475, 515
NlaIV GGNNCC 1 cut(s) 576
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 2 cut(s) 40, 277
PaeR7I CTCGAG 1 cut(s) 603
PagI TCATGA 1 cut(s) 511
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 263
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 576
PspXI VCTCGAGB 1 cut(s) 603
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 2 cut(s) 412, 601
RsaNI GTAC 2 cut(s) 411, 600
RseI CAYNNNNRTG 2 cut(s) 112, 561
Sau3AI GATC 4 cut(s) 133, 202, 337, 574
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 380
SetI ASST 4 cut(s) 167, 177, 434, 601
SfaNI GCATC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 603
SmiMI CAYNNNNRTG 2 cut(s) 112, 561
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 4 cut(s) 294, 305, 342, 582
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 353, 542, 621
TaiI ACGT 1 cut(s) 434
TaqI TCGA 2 cut(s) 205, 604
TasI AATT 4 cut(s) 294, 305, 342, 582
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 467
TscAI CASTG 1 cut(s) 624
TspDTI ATGAA 3 cut(s) 471, 500, 528
TspRI CASTG 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 305
XceI RCATGY 2 cut(s) 40, 277
XhoI CTCGAG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 1 cut(s) 93
ZraI GACGTC 1 cut(s) 432
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.