Rh2BG394200

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018680
Physical Location & Seq
Forward (+)
55925739 .. 55926565
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG394200.1

Sequence Viewer

Length: 711 bp
ATGCATCGTGATCTGAAGACTGGAATGGGTAAACATATGAGGCTTTATGAGGTGTTGCCTCGGTTGGATAAGACAATGGATCGAATACGGGAAAGGGATCAAATTAAGTTTGAATCCTGTTTTTTCATGCAAGATGAGTTTCTTTTTCCTGCTTTGGGATCCTCAATAGTTACTCTTACGCAGTACGGTAAACCATACAGGAAGTGGAACGTTACATTTATGAACAACAATGACAACCCCACACTGAGTTGCACGTGCAAGCTGTTTGAGTCGGATGGAATTCCTTGCTGCCATATATTTACTGTGATGAAAGTGAAGCAGATAACAGCGTTTCCAGATTCTTTGGTGACAAACAGGTGGACTAAAGATGCGACGACTACAAATGTGAAAACCCTACCTAGCAATGGTGAGATCCCCGACCATTCCCTTCGCCTAGCAAGGTACGGTGAGATGATGGCAGAATGTACACAGACTTGTTCCAGGGTGTCATTTTCCGAAGACGATTACTATGAAACTATTGAATACATGAGGCGTATGTCTATTAGGGCGAGGAGATATCCAGTTCATGAAGACCAGGTTGATACAACACATAACAGTCTTTACGGACTTCACGAGAATGTTGTGAAGGATCCTACCATATGTAGATCAAAAGGTACTCGAGCAAATCCCCCCACTGTTGTCGATGAAGGAAAAGCAGGGCTTACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

236

Amino Acids

27.3

Weight (kDa)

8.37

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 72 - 103 1.2e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018680)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000894.1_g000067
rosa_roxburghii Rroxscaffold_5G00350850
rosa_samantha Rh1DG303600 Rh2AG311300 Rh2BG305400 Rh2BG394200 Rh2DG335300 Rh3BG310800 Rh7CG048700
rosa_wichuraiana Rw2G031690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 210
AclWI GGATC 7 cut(s) 87, 105, 153, 166, 406, 623, 636
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 35
AcvI CACGTG 1 cut(s) 255
AfaI GTAC 4 cut(s) 185, 443, 466, 655
AfiI CCNNNNNNNGG 2 cut(s) 155, 404
AgsI TTSAA 2 cut(s) 113, 521
AjnI CCWGG 2 cut(s) 479, 573
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
AlwI GGATC 7 cut(s) 87, 105, 153, 166, 406, 623, 636
Ama87I CYCGRG 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 279
AsuHPI GGTGA 3 cut(s) 358, 419, 458
AvaI CYCGRG 1 cut(s) 657
BamHI GGATCC 2 cut(s) 158, 628
BauI CACGAG 1 cut(s) 611
BbrPI CACGTG 1 cut(s) 255
BbsI GAAGAC 3 cut(s) 23, 504, 576
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 269, 448
BciT130I CCWGG 2 cut(s) 481, 575
BfaI CTAG 2 cut(s) 399, 434
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 481, 575
BmeT110I CYCGRG 1 cut(s) 657
BmiI GGNNCC 2 cut(s) 160, 630
BmrFI CCNGG 2 cut(s) 481, 575
BmsI GCATC 2 cut(s) 13, 358
BpiI GAAGAC 3 cut(s) 23, 504, 576
BsaAI YACGTR 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 59, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 404
Bse1I ACTGG 2 cut(s) 25, 560
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 481, 575
BseDI CCNNGG 2 cut(s) 59, 480
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 155, 404
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 25, 560
BseRI GAGGAG 1 cut(s) 565
BseXI GCAGC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 657
BslI CCNNNNNNNGG 2 cut(s) 155, 404
BsoBI CYCGRG 1 cut(s) 657
Bsp1407I TGTACA 1 cut(s) 464
Bsp143I GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
BspCNI CTCAG 1 cut(s) 237
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 160, 630
BspPI GGATC 7 cut(s) 87, 105, 153, 166, 406, 623, 636
BsrDI GCAATG 1 cut(s) 409
BsrGI TGTACA 1 cut(s) 464
BsrI ACTGG 2 cut(s) 25, 560
BssECI CCNNGG 2 cut(s) 59, 480
BssMI GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
BssSI CACGAG 1 cut(s) 611
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 2 cut(s) 481, 575
Bst4CI ACNGT 5 cut(s) 188, 304, 446, 596, 676
BstAUI TGTACA 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 7 cut(s) 13, 82, 100, 161, 414, 631, 647
BstMBI GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
BstNI CCWGG 2 cut(s) 481, 575
BstSCI CCNGG 2 cut(s) 479, 573
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 3 cut(s) 23, 504, 576
BstX2I RGATCY 3 cut(s) 158, 411, 628
BstYI RGATCY 3 cut(s) 158, 411, 628
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 242, 672
Cac8I GCNNGC 1 cut(s) 260
CciI TCATGA 1 cut(s) 565
CsiI ACCWGGT 1 cut(s) 573
Csp6I GTAC 4 cut(s) 184, 442, 465, 654
CviAII CATG 3 cut(s) 127, 526, 566
CviJI RGCY 3 cut(s) 43, 262, 700
CviKI_1 RGCY 3 cut(s) 43, 262, 700
CviQI GTAC 4 cut(s) 184, 442, 465, 654
DdeI CTNAG 1 cut(s) 245
DpnI GATC 7 cut(s) 12, 81, 99, 160, 413, 630, 646
DpnII GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
Eco32I GATATC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 479, 573
EcoRV GATATC 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 130, 529, 569
FalI AAGNNNNNCTT 1 cut(s) 684
FatI CATG 3 cut(s) 126, 525, 565
FauNDI CATATG 2 cut(s) 36, 638
Fnu4HI GCNGC 1 cut(s) 289
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 289
FspBI CTAG 2 cut(s) 399, 434
GluI GCNGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 130, 529, 569
HinfI GANTC 3 cut(s) 113, 269, 338
HphI GGTGA 3 cut(s) 358, 419, 458
Hpy166II GTNNAC 4 cut(s) 32, 191, 360, 467
Hpy188I TCNGA 3 cut(s) 15, 274, 496
Hpy188III TCNNGA 4 cut(s) 8, 335, 566, 611
Hpy8I GTNNAC 4 cut(s) 32, 191, 360, 467
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 437, 619, 680
HpyCH4III ACNGT 5 cut(s) 188, 304, 446, 596, 676
HpyCH4IV ACGT 2 cut(s) 210, 254
HpyCH4V TGCA 4 cut(s) 4, 130, 252, 258
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 210, 254
Hsp92II CATG 3 cut(s) 130, 529, 569
Kzo9I GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 13, 358
MabI ACCWGGT 1 cut(s) 573
MaeI CTAG 2 cut(s) 399, 434
MaeII ACGT 2 cut(s) 210, 254
MaeIII GTNAC 3 cut(s) 169, 211, 346
MalI GATC 7 cut(s) 12, 81, 99, 160, 413, 630, 646
MboI GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
MboII GAAGA 3 cut(s) 28, 509, 581
MflI RGATCY 3 cut(s) 158, 411, 628
MluCI AATT 2 cut(s) 102, 279
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 2 cut(s) 45, 252
MnlI CCTC 6 cut(s) 33, 43, 69, 172, 522, 543
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 481, 575
MvaI CCWGG 2 cut(s) 481, 575
NdeI CATATG 2 cut(s) 36, 638
NdeII GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
NlaIII CATG 3 cut(s) 130, 529, 569
NlaIV GGNNCC 2 cut(s) 160, 630
NmuCI GTSAC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 657
PagI TCATGA 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PfeI GAWTC 2 cut(s) 113, 338
PkrI GCNGC 1 cut(s) 290
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 255
PmlI CACGTG 1 cut(s) 255
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 479, 573
PspCI CACGTG 1 cut(s) 255
PspGI CCWGG 2 cut(s) 479, 573
PspN4I GGNNCC 2 cut(s) 160, 630
PspXI VCTCGAGB 1 cut(s) 657
PsuI RGATCY 3 cut(s) 158, 411, 628
RsaI GTAC 4 cut(s) 185, 443, 466, 655
RsaNI GTAC 4 cut(s) 184, 442, 465, 654
RseI CAYNNNNRTG 1 cut(s) 615
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 7 cut(s) 10, 79, 97, 158, 411, 628, 644
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 481, 575
SetI ASST 9 cut(s) 54, 213, 257, 264, 359, 400, 443, 579, 655
SexAI ACCWGGT 1 cut(s) 573
SfaNI GCATC 2 cut(s) 13, 358
Sfr274I CTCGAG 1 cut(s) 657
SlaI CTCGAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
Sse9I AATT 2 cut(s) 102, 279
SspMI CTAG 2 cut(s) 399, 434
StyD4I CCNGG 2 cut(s) 479, 573
TaaI ACNGT 5 cut(s) 188, 304, 446, 596, 676
TaiI ACGT 2 cut(s) 213, 257
TaqI TCGA 3 cut(s) 82, 658, 681
TasI AATT 2 cut(s) 102, 279
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 2 cut(s) 113, 338
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 249, 679
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 7 cut(s) 115, 236, 323, 525, 554, 582, 699
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 249, 679
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 657
XspI CTAG 2 cut(s) 399, 434
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.