Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0012137

Physical Location & Seq

Genomic Coordinates Forward (+)

72298 .. 73377

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgttcatcacagggtcgtatgatcacacagtgaagctctgggacgtgagggataaggattcgagctccgtgacggaagtgaatcacggtaagccggtggaggacgtgatgttcttgccttccggcgggttaattgcgacggccggaggagattcggtgaagatttgggatttgattggaggagggaagttggtgtattcaatggagagccataacaagacggtgacttcgatttgtgttgggaaagttgggaagctcagtggggaagaggctcagcagtacaggattttgagtgtggcattggatggttacatgaaggttttcgattacgcgaaaatgaaggttactcattcaatgaggttccctgctccgctcatgtcagtggggttttcgccggattgtatgactagggttataggaacttcgaatgggataatatatgctgggaggaggaaaaacaaggaagatgtggagagtggttctgatgaggagcttaccaagtatgaaaggaggttgaagaagttgggttccgggaatgctttgggtttggggcctgtggcggaggagccacggattagggtcttgaagcctactagttttcggtattttcagagagggcagtcagagaagccgtctgagagagattatctggtgatgaggccgaagaaagtgaagttgggggagcatgataagctgttgaagaagtttaggcataaggaagctctggtgtctgtattggggaggactaagaatccagagaatgctgtggctgtgatggaagaattggtgtcgagaaagaagttgctgaaatgtgtttcgaatttggatttggaggagctcggaatgttgctgatgtttttgcagaggtactcaaccatgccaaggtactcgaggttgttgatggggttgacagagaaggttattgagatgagggctgacgacattagagcttctactgagttgaagggtcttattagaaacattaaacgtgctgtcgaggaggaaatacgaatacaacaatctttgcaagagatacagggtgttatttctcctttgttgaggataactggaagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

UTP15_C WD40

Protein Analysis

359

Amino Acids

40.44

Weight (kDa)

9.56

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Gbeta	PF25391	1 - 86	3.4e-07	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	2 - 135	8.1e-13	WDR5 beta-propeller domain
WD40_Prp19	PF24814	2 - 146	2e-10	Prp19 WD40 domain
WDR55	PF24796	2 - 147	2.5e-07	WDR55
Beta-prop_THOC3	PF25174	3 - 76	9.9e-08	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	3 - 140	9e-11	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	3 - 120	2.7e-06	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	29 - 152	6.7e-08	THOC3 beta-propeller domain
UTP15_C	PF09384	209 - 352	3.6e-38	UTP15 C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47990
fragaria_vesca	FvH4_5g25500
malus_domestica	MD03G1274200.v1.1 MD11G1296600.v1.1
prunus_persica	Prupe.1G201800_v2.0.a1 Prupe.1G201800_v2.0.a1
pyrus_communis	pycom03g21860
rosa_chinensis	RchiOBHm_Chr7g0215731
rosa_laevigata	RLG00000002628 RLG00000002630
rosa_multiflora	Rmu_sc0000898.1_g000015
rosa_roxburghii	Rroxscaffold_3G00243890
rosa_rugosa	Rorug07G0156300
rosa_samantha	Rh7AG293400 Rh7BG285700 Rh7CG313600 Rh7CG313800 Rh7DG296700
rosa_wichuraiana	Rw7G024970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	332
AciI	CCGC	3 cut(s)	126, 371, 560
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	820
AdeI	CACNNNGTG	1 cut(s)	31
AfaI	GTAC	3 cut(s)	281, 869, 887
AfiI	CCNNNNNNNGG	2 cut(s)	125, 882
AgsI	TTSAA	6 cut(s)	201, 354, 517, 586, 700, 964
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	2 cut(s)	46, 106
AjuI	GAANNNNNNNTTGG	4 cut(s)	659, 691, 812, 844
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	8 cut(s)	37, 66, 256, 493, 694, 722, 838, 950
AluI	AGCT	8 cut(s)	37, 66, 256, 493, 694, 722, 838, 950
Alw21I	GWGCWC	2 cut(s)	68, 840
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	3 cut(s)	141, 551, 659
ApoI	RAATTY	1 cut(s)	820
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	3 cut(s)	169, 235, 664
AsuII	TTCGAA	2 cut(s)	425, 818
AvaI	CYCGRG	1 cut(s)	889
BanII	GRGCYC	2 cut(s)	68, 840
Bbv12I	GWGCWC	2 cut(s)	68, 840
BccI	CCATC	3 cut(s)	299, 769, 895
BceAI	ACGGC	2 cut(s)	156, 616
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	2 cut(s)	408, 594
BlpI	GCTNAGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	889
BmgBI	CACGTC	2 cut(s)	46, 106
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	4 cut(s)	362, 529, 552, 567
BmrFI	CCNGG	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	425, 818
BpuMI	CCSGG	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	569, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 882
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	1072
BseDI	CCNNGG	2 cut(s)	569, 881
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	125, 882
BseMII	CTCAG	4 cut(s)	271, 287, 627, 948
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	7 cut(s)	162, 195, 463, 503, 578, 848, 1013
BseX3I	CGGCCG	1 cut(s)	141
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	143, 553, 661
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	2 cut(s)	68, 840
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	5 cut(s)	95, 123, 144, 395, 531
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	125, 882
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	2 cut(s)	541, 766
BsnI	GGCC	3 cut(s)	143, 553, 661
BsoBI	CYCGRG	1 cut(s)	889
Bsp119I	TTCGAA	2 cut(s)	425, 818
Bsp1286I	GDGCHC	2 cut(s)	68, 840
Bsp143I	GATC	1 cut(s)	22
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	126, 371, 560
BspANI	GGCC	3 cut(s)	143, 553, 661
BspCNI	CTCAG	4 cut(s)	270, 286, 628, 949
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	4 cut(s)	362, 529, 552, 567
BspT104I	TTCGAA	2 cut(s)	425, 818
BsrBI	CCGCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	1072
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	569, 881
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	881
Bst4CI	ACNGT	3 cut(s)	31, 89, 223
Bst6I	CTCTTC	1 cut(s)	261
BstBI	TTCGAA	2 cut(s)	425, 818
BstDEI	CTNAG	5 cut(s)	257, 273, 636, 747, 957
BstDSI	CCRYGG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	530
BstUI	CGCG	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	143, 553, 661
BtgI	CCRYGG	1 cut(s)	569
BtrI	CACGTC	2 cut(s)	46, 106
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	3 cut(s)	36, 265, 387
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	280, 868, 886
CviAII	CATG	4 cut(s)	313, 376, 686, 877
CviQI	GTAC	3 cut(s)	280, 868, 886
DdeI	CTNAG	5 cut(s)	257, 273, 636, 747, 957
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraIII	CACNNNGTG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	575
Ecl136II	GAGCTC	2 cut(s)	66, 838
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	881
Eco24I	GRGCYC	2 cut(s)	68, 840
Eco52I	CGGCCG	1 cut(s)	141
Eco53kI	GAGCTC	2 cut(s)	66, 838
Eco88I	CYCGRG	1 cut(s)	889
EcoICRI	GAGCTC	2 cut(s)	66, 838
EcoO109I	RGGNCCY	1 cut(s)	551
EcoT14I	CCWWGG	1 cut(s)	881
EcoT38I	GRGCYC	2 cut(s)	68, 840
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	4 cut(s)	316, 379, 689, 880
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	312, 375, 685, 876
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	22
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	68, 840
FspBI	CTAG	2 cut(s)	408, 594
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	143, 553, 661
HapII	CCGG	5 cut(s)	95, 123, 144, 395, 531
Hin1II	CATG	4 cut(s)	316, 379, 689, 880
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HinfI	GANTC	4 cut(s)	59, 82, 152, 751
HpaII	CCGG	5 cut(s)	95, 123, 144, 395, 531
HphI	GGTGA	3 cut(s)	169, 235, 664
Hpy166II	GTNNAC	1 cut(s)	909
Hpy188I	TCNGA	5 cut(s)	484, 612, 625, 637, 842
Hpy188III	TCNNGA	3 cut(s)	583, 755, 792
Hpy8I	GTNNAC	1 cut(s)	909
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	129, 310, 334, 910, 958
HpyCH4III	ACNGT	3 cut(s)	31, 89, 223
HpyCH4IV	ACGT	3 cut(s)	45, 105, 988
HpyCH4V	TGCA	2 cut(s)	862, 1027
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	5 cut(s)	257, 273, 636, 747, 957
HpySE526I	ACGT	3 cut(s)	45, 105, 988
Hsp92II	CATG	4 cut(s)	316, 379, 689, 880
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	6 cut(s)	71, 373, 490, 565, 682, 835
MaeI	CTAG	2 cut(s)	408, 594
MaeII	ACGT	3 cut(s)	45, 105, 988
MaeIII	GTNAC	4 cut(s)	70, 223, 308, 343
MalI	GATC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	1 cut(s)	22
MboII	GAAGA	7 cut(s)	172, 278, 476, 529, 676, 712, 791
MhlI	GDGCHC	2 cut(s)	68, 840
MluCI	AATT	3 cut(s)	132, 782, 820
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	2 cut(s)	131, 984
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	5 cut(s)	95, 123, 144, 395, 531
MspR9I	CCNGG	1 cut(s)	532
Mva1269I	GAATGC	2 cut(s)	541, 766
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	691
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	4 cut(s)	316, 379, 689, 880
NlaIV	GGNNCC	4 cut(s)	362, 529, 552, 567
NmuCI	GTSAC	2 cut(s)	70, 223
NspV	TTCGAA	2 cut(s)	425, 818
PaeR7I	CTCGAG	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	2 cut(s)	541, 766
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	4 cut(s)	59, 82, 152, 751
PfoI	TCCNGGA	1 cut(s)	530
Psp124BI	GAGCTC	2 cut(s)	68, 840
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	4 cut(s)	362, 529, 552, 567
PspPI	GGNCC	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	889
RsaI	GTAC	3 cut(s)	281, 869, 887
RsaNI	GTAC	3 cut(s)	280, 868, 886
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	2 cut(s)	68, 840
SaqAI	TTAA	2 cut(s)	131, 984
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	68, 840
Sfr274I	CTCGAG	1 cut(s)	889
SfuI	TTCGAA	2 cut(s)	425, 818
SlaI	CTCGAG	1 cut(s)	889
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	889
SmoI	CTYRAG	1 cut(s)	889
SpeI	ACTAGT	1 cut(s)	593
Sse9I	AATT	3 cut(s)	132, 782, 820
SsiI	CCGC	3 cut(s)	126, 371, 560
SspMI	CTAG	2 cut(s)	408, 594
SstI	GAGCTC	2 cut(s)	68, 840
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	3 cut(s)	31, 89, 223
TaiI	ACGT	3 cut(s)	48, 108, 991
TaqI	TCGA	8 cut(s)	62, 230, 324, 425, 791, 818, 890, 996
TasI	AATT	3 cut(s)	132, 782, 820
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	59, 82, 152, 751
Tru1I	TTAA	2 cut(s)	131, 984
Tru9I	TTAA	2 cut(s)	131, 984
TscAI	CASTG	3 cut(s)	36, 265, 387
TseFI	GTSAC	2 cut(s)	70, 223
Tsp45I	GTSAC	2 cut(s)	70, 223
TspDTI	ATGAA	3 cut(s)	329, 353, 519
TspGWI	ACGGA	3 cut(s)	58, 89, 586
TspRI	CASTG	3 cut(s)	36, 265, 387
XapI	RAATTY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	2 cut(s)	408, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.