Rmu_sc0000948.1_g000034

peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000948.1
OG0017366
Physical Location & Seq
Forward (+)
149550 .. 151784
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
atggcttcttacaaattactcctgcttatcttggtctttgctggtgcatttattccatacattaatggcaagctatctccaaagtactactcatctacatgcccaaatgcattgtctatcgtgcaaggcgaagttatcgcagcaattaagaacgtaacacgcataggggattcgttactccgcctgcatttccatgattgctttgtaaatggctgtgatgcttcaatactgctggatgatacaccaggctttattggtgagaaaacagcagttccaaataacaactcggtcagaggatttgaagtagttgatcagattaaagccaagcttgagaaggcatgccccggagtggtgtcgtgcgctgatattcttgctctagctgcgcgtgactctgtagtacatttgggcggcccttcatggaacgttggtttgggaagaagagattccactagtgctagtaggagtgctgcaaacacctccatccctccacccacatcaaatataatcataattacattcacaatagcaaccatatcagatcacaatccatcaagcaagaaatgtaaattccatctgggcaccaacctaatttatcttaattgcgccccaggatctcacaccattggcctggcaagatgcacatcattccgagcacgcatctacaacgacaccactattgatgccgtctttgccaagtcattgcagagcaattgcccaagaaccggaaatgataacaaccttgcaagccttgacctccagaccccaacatattttgacaatttatattacaagaatctgctgaaagaaaagggtcttcttcattcagaccaggagctcttcaacgggacatctgcagatgctctggtaaaagtatacgcaagcaacactttcaaattcttcgaggactttgccaagtccatggtcaaaatgggaaagataaagcctctcacaggaagccagggtgaaatcagaatcaattgcagaaaagtcaattggaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

36.24

Weight (kDa)

9.08

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 295 9.3e-72 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g25550
malus_domestica MD01G1162100.v1.1 MD01G1162400.v1.1 MD07G1230500.v1.1
prunus_persica Prupe.2G260600_v2.0.a1
pyrus_communis pycom07g20800
rosa_chinensis RchiOBHm_Chr1g0371551
rosa_multiflora Rmu_sc0000948.1_g000034
rosa_roxburghii Rroxscaffold_4G00285560
rosa_rugosa Rorug01G0365300
rosa_samantha Rh1BG338700 Rh1DG369700
rosa_wichuraiana Rw1G033010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 873
AccII CGCG 1 cut(s) 385
AciI CCGC 2 cut(s) 181, 408
AclI AACGTT 1 cut(s) 423
AclWI GGATC 1 cut(s) 619
AcsI RAATTY 2 cut(s) 566, 893
AfaI GTAC 2 cut(s) 86, 399
AfiI CCNNNNNNNGG 3 cut(s) 349, 722, 950
AgsI TTSAA 4 cut(s) 225, 302, 841, 892
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 5 cut(s) 244, 607, 627, 828, 957
AjuI GAANNNNNNNTTGG 3 cut(s) 413, 445, 976
AluBI AGCT 4 cut(s) 73, 328, 380, 835
AluI AGCT 4 cut(s) 73, 328, 380, 835
Alw21I GWGCWC 2 cut(s) 655, 837
AlwI GGATC 1 cut(s) 619
AoxI GGCC 2 cut(s) 409, 625
ApeKI GCWGC 3 cut(s) 140, 380, 467
ApoI RAATTY 2 cut(s) 566, 893
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 3 cut(s) 362, 385, 605
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 269, 974
BaeGI GKGCMC 1 cut(s) 581
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 806
Bbv12I GWGCWC 2 cut(s) 655, 837
BbvI GCAGC 3 cut(s) 152, 367, 454
BccI CCATC 3 cut(s) 488, 556, 579
BceAI ACGGC 1 cut(s) 668
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 5 cut(s) 246, 609, 629, 830, 959
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 345
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 377, 450, 456
BfmI CTRYAG 2 cut(s) 393, 852
BisI GCNGC 4 cut(s) 141, 381, 409, 468
BlsI GCNGC 4 cut(s) 142, 382, 410, 469
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 6 cut(s) 246, 345, 609, 629, 830, 959
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 6 cut(s) 246, 345, 609, 629, 830, 959
BmsI GCATC 5 cut(s) 208, 626, 666, 670, 847
BpiI GAAGAC 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 740
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 345
BsaBI GATNNNNATC 2 cut(s) 543, 640
BsaJI CCNNGG 4 cut(s) 343, 607, 918, 958
BsaWI WCCGGW 1 cut(s) 722
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 722, 950
Bse3DI GCAATG 1 cut(s) 698
Bse8I GATNNNNATC 2 cut(s) 543, 640
BseBI CCWGG 5 cut(s) 246, 609, 629, 830, 959
BseDI CCNNGG 4 cut(s) 343, 607, 918, 958
BseGI GGATG 2 cut(s) 241, 480
BseJI GATNNNNATC 2 cut(s) 543, 640
BseLI CCNNNNNNNGG 3 cut(s) 349, 722, 950
BseMI GCAATG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 3 cut(s) 152, 367, 454
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 2 cut(s) 411, 627
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 2 cut(s) 655, 837
BsiSI CCGG 2 cut(s) 345, 723
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 3 cut(s) 349, 722, 950
BsmFI GGGAC 1 cut(s) 859
BsnI GGCC 2 cut(s) 411, 627
Bsp1286I GDGCHC 3 cut(s) 581, 655, 837
Bsp143I GATC 3 cut(s) 310, 538, 611
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 2 cut(s) 181, 408
BspANI GGCC 2 cut(s) 411, 627
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 1 cut(s) 619
BspQI GCTCTTC 1 cut(s) 842
BspT107I GGYRCC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 698
BssECI CCNNGG 4 cut(s) 343, 607, 918, 958
BssMI GATC 3 cut(s) 310, 538, 611
BssNAI GTATAC 1 cut(s) 874
BssT1I CCWWGG 1 cut(s) 918
Bst1107I GTATAC 1 cut(s) 874
Bst2UI CCWGG 5 cut(s) 246, 609, 629, 830, 959
Bst6I CTCTTC 2 cut(s) 433, 842
BstC8I GCNNGC 6 cut(s) 71, 185, 340, 655, 745, 880
BstDSI CCRYGG 1 cut(s) 918
BstENI CCTNNNNNAGG 1 cut(s) 948
BstF5I GGATG 2 cut(s) 241, 480
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 3 cut(s) 362, 385, 605
BstKTI GATC 3 cut(s) 313, 541, 614
BstMBI GATC 3 cut(s) 310, 538, 611
BstMWI GCNNNNNNNGC 2 cut(s) 380, 689
BstNI CCWGG 5 cut(s) 246, 609, 629, 830, 959
BstNSI RCATGY 2 cut(s) 102, 342
BstSCI CCNGG 6 cut(s) 244, 343, 607, 627, 828, 957
BstSFI CTRYAG 2 cut(s) 393, 852
BstSLI GKGCMC 1 cut(s) 581
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 3 cut(s) 152, 367, 454
BstV2I GAAGAC 1 cut(s) 806
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 2 cut(s) 628, 919
BstYI RGATCY 1 cut(s) 611
BstZ17I GTATAC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 411, 627
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 2 cut(s) 241, 480
Cac8I GCNNGC 6 cut(s) 71, 185, 340, 655, 745, 880
CfoI GCGC 3 cut(s) 362, 385, 605
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 2 cut(s) 85, 398
CviAII CATG 5 cut(s) 99, 194, 339, 417, 919
CviQI GTAC 2 cut(s) 85, 398
DpnI GATC 3 cut(s) 312, 540, 613
DpnII GATC 3 cut(s) 310, 538, 611
Eam1104I CTCTTC 2 cut(s) 433, 842
EarI CTCTTC 2 cut(s) 433, 842
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 918
Eco24I GRGCYC 1 cut(s) 837
Eco53kI GAGCTC 1 cut(s) 835
EcoICRI GAGCTC 1 cut(s) 835
EcoNI CCTNNNNNAGG 1 cut(s) 948
EcoRII CCWGG 5 cut(s) 244, 607, 627, 828, 957
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 5 cut(s) 102, 197, 342, 420, 922
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 871, 903
FaqI GGGAC 1 cut(s) 859
FatI CATG 5 cut(s) 98, 193, 338, 416, 918
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 4 cut(s) 141, 381, 409, 468
FokI GGATG 2 cut(s) 248, 467
FriOI GRGCYC 1 cut(s) 837
Fsp4HI GCNGC 4 cut(s) 141, 381, 409, 468
FspBI CTAG 3 cut(s) 377, 450, 456
GlaI GCGC 3 cut(s) 361, 384, 604
GluI GCNGC 4 cut(s) 141, 381, 409, 468
GsuI CTGGAG 1 cut(s) 740
HaeIII GGCC 2 cut(s) 411, 627
HapII CCGG 2 cut(s) 345, 723
HhaI GCGC 3 cut(s) 362, 385, 605
Hin1II CATG 5 cut(s) 102, 197, 342, 420, 922
Hin6I GCGC 3 cut(s) 360, 383, 603
HinP1I GCGC 3 cut(s) 360, 383, 603
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 5 cut(s) 170, 389, 443, 793, 972
HpaII CCGG 2 cut(s) 345, 723
HphI GGTGA 2 cut(s) 269, 974
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 6 cut(s) 293, 315, 538, 650, 826, 971
Hpy188III TCNNGA 1 cut(s) 757
Hpy8I GTNNAC 1 cut(s) 874
HpyAV CCTTC 2 cut(s) 328, 423
HpyCH4IV ACGT 2 cut(s) 153, 423
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 689
HpySE526I ACGT 2 cut(s) 153, 423
Hsp92II CATG 5 cut(s) 102, 197, 342, 420, 922
HspAI GCGC 3 cut(s) 360, 383, 603
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 310, 538, 611
LguI GCTCTTC 1 cut(s) 842
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 3 cut(s) 152, 367, 454
LweI GCATC 5 cut(s) 208, 626, 666, 670, 847
MaeI CTAG 3 cut(s) 377, 450, 456
MaeII ACGT 2 cut(s) 153, 423
MaeIII GTNAC 3 cut(s) 154, 174, 386
MalI GATC 3 cut(s) 312, 540, 613
MboI GATC 3 cut(s) 310, 538, 611
MboII GAAGA 6 cut(s) 447, 450, 806, 809, 829, 889
MfeI CAATTG 3 cut(s) 709, 976, 991
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 3 cut(s) 581, 655, 837
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 6 cut(s) 287, 487, 495, 764, 895, 954
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 4 cut(s) 63, 147, 318, 597
MslI CAYNNNNRTG 2 cut(s) 97, 192
MspI CCGG 2 cut(s) 345, 723
MspR9I CCNGG 6 cut(s) 246, 345, 609, 629, 830, 959
MunI CAATTG 3 cut(s) 709, 976, 991
MvaI CCWGG 5 cut(s) 246, 609, 629, 830, 959
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 380, 689
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 918
NdeII GATC 3 cut(s) 310, 538, 611
NlaIII CATG 5 cut(s) 102, 197, 342, 420, 922
NlaIV GGNNCC 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 2 cut(s) 102, 342
PaeI GCATGC 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 4 cut(s) 170, 443, 793, 972
PkrI GCNGC 4 cut(s) 142, 382, 410, 469
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PshBI ATTAAT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 423
Psp6I CCWGG 5 cut(s) 244, 607, 627, 828, 957
PspGI CCWGG 5 cut(s) 244, 607, 627, 828, 957
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 1 cut(s) 410
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 2 cut(s) 86, 399
RsaNI GTAC 2 cut(s) 85, 398
RseI CAYNNNNRTG 2 cut(s) 97, 192
SacI GAGCTC 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 842
SaqAI TTAA 4 cut(s) 63, 147, 318, 597
SatI GCNGC 4 cut(s) 141, 381, 409, 468
Sau3AI GATC 3 cut(s) 310, 538, 611
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 6 cut(s) 246, 345, 609, 629, 830, 959
SduI GDGCHC 3 cut(s) 581, 655, 837
SfaNI GCATC 5 cut(s) 208, 626, 666, 670, 847
SfcI CTRYAG 2 cut(s) 393, 852
SmiMI CAYNNNNRTG 2 cut(s) 97, 192
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 342
SsiI CCGC 2 cut(s) 181, 408
SspMI CTAG 3 cut(s) 377, 450, 456
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 6 cut(s) 244, 343, 607, 627, 828, 957
StyI CCWWGG 1 cut(s) 918
TaiI ACGT 2 cut(s) 156, 426
TaqI TCGA 1 cut(s) 900
TaqII GACCGA 1 cut(s) 277
TatI WGTACW 2 cut(s) 84, 397
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 4 cut(s) 170, 443, 793, 972
Tru1I TTAA 4 cut(s) 63, 147, 318, 597
Tru9I TTAA 4 cut(s) 63, 147, 318, 597
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 140, 380, 467
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 405, 809
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 948
XapI RAATTY 2 cut(s) 566, 893
XceI RCATGY 2 cut(s) 102, 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 925
XmiI GTMKAC 1 cut(s) 873
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 3 cut(s) 377, 450, 456
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.