Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001037.1

Orthogroup ID

OG0014961

Physical Location & Seq

Genomic Coordinates Forward (+)

32745 .. 37803

Gene Structure 5059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggcttggaatgtgttcaagttctgcacagctctgcggggtctgggctcggttatgatcctcttggttcttggagttgtgggtgtgacgtattacactgtcgttttgactaattatggcccggctttgtatgctggtgggcttgattctctcattgctattgtcgttttgatcttgttccattctttgttggtgatgctactatggagttacttttctgttgttttgacggatcccggtggtgtgccaccgaattggaggccagctgttgatgaagaaagaggggaagctgacccattaaatggttcagaatttagtgatttgcaaactgacccatcaaatcagagagtccggtattgccggaagtgtaaccagttgaaaccacctcgttgccatcattgctcagtttgcgggcggtgtgtactgaaaatggatcaccattgtgtatgggttgtcaattgtgttggggccttaaattacaagtattttcttcttttcttgttctacacgttccttgagacaactgttgtaactttatgcttgctgccacacttcattgcattttttagtgaaggagaaatacctggaacaccggggacccttgcaactactttccttgctttcgttttgaatcttgcgtttgcattaagtgtactggggtttcttatcatgcatatatccttggtggctgcaaatactacaactattgaggcatatgagaagaaaaccactccgaaatggcgctatgaccttggtcggaaaaagaattttgaacaggtgtttgggacagacaagctatactggttcatccccgcttattcagaagaagatttgcgacggataccagcgctccagggtctcgagtatccatctaagcctgagtttgactcccaagacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0007275 GO:0007568 GO:0008150 GO:0010150 GO:0012505 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019707 GO:0031323 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065007 GO:0090693 GO:0097708 GO:0098791 GO:0099402 GO:0140096 GO:1900055 GO:2000024 GO:2000026 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

DHHC

Protein Analysis

300

Amino Acids

33.84

Weight (kDa)

6.38

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	115 - 241	6.8e-39	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60800
fragaria_vesca	FvH4_7g11740
malus_domestica	MD02G1205100.v1.1 MD07G1121600.v1.1
prunus_persica	Prupe.2G144500_v2.0.a1
pyrus_communis	pycom07g10370
rosa_chinensis	RchiOBHm_Chr1g0350251
rosa_laevigata	RLG00000028496
rosa_multiflora	Rmu_sc0001037.1_g000009
rosa_roxburghii	Rroxscaffold_4G00304950
rosa_rugosa	Rorug01G0210300 Rorug01G0210400
rosa_samantha	Rh1AG225400 Rh1BG193300
rosa_wichuraiana	Rw0G018800 Rw1G019380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	4 cut(s)	37, 411, 415, 813
AclWI	GGATC	4 cut(s)	52, 227, 240, 441
AcsI	RAATTY	2 cut(s)	311, 766
AfaI	GTAC	2 cut(s)	423, 654
AfeI	AGCGCT	1 cut(s)	849
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	4 cut(s)	19, 379, 631, 773
AjnI	CCWGG	2 cut(s)	583, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AleI	CACNNNNGTG	1 cut(s)	441
AluBI	AGCT	4 cut(s)	32, 266, 290, 796
AluI	AGCT	4 cut(s)	32, 266, 290, 796
Alw26I	GTCTC	2 cut(s)	512, 863
AlwI	GGATC	4 cut(s)	52, 227, 240, 441
Ama87I	CYCGRG	1 cut(s)	860
Aor51HI	AGCGCT	1 cut(s)	849
AoxI	GGCC	3 cut(s)	118, 260, 468
ApeKI	GCWGC	2 cut(s)	544, 689
ApoI	RAATTY	2 cut(s)	311, 766
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	744, 850
AspS9I	GGNCC	3 cut(s)	119, 468, 597
AsuC2I	CCSGG	3 cut(s)	122, 237, 594
AsuHPI	GGTGA	2 cut(s)	205, 428
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	1 cut(s)	597
BamHI	GGATCC	1 cut(s)	232
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BbvI	GCAGC	2 cut(s)	531, 676
BccI	CCATC	3 cut(s)	343, 402, 877
BciT130I	CCWGG	2 cut(s)	585, 854
BciVI	GTATCC	2 cut(s)	834, 876
BcnI	CCSGG	3 cut(s)	122, 237, 594
BcoDI	GTCTC	2 cut(s)	512, 863
BfoI	RGCGCY	2 cut(s)	745, 851
BfuI	GTATCC	2 cut(s)	834, 876
BisI	GCNGC	2 cut(s)	545, 690
BlsI	GCNGC	2 cut(s)	546, 691
Bme1390I	CCNGG	5 cut(s)	122, 237, 585, 594, 854
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	119, 468, 597
BmiI	GGNNCC	4 cut(s)	234, 469, 598, 599
BmrFI	CCNGG	5 cut(s)	122, 237, 585, 594, 854
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	665
BoxI	GACNNNNGTC	1 cut(s)	753
BplI	GAGNNNNNCTC	1 cut(s)	872
BpmI	CTGGAG	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	3 cut(s)	122, 237, 594
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	4 cut(s)	593, 681, 751, 853
BsaWI	WCCGGW	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	373, 660, 806
Bse3DI	GCAATG	3 cut(s)	153, 397, 555
BseBI	CCWGG	2 cut(s)	585, 854
BseDI	CCNNGG	4 cut(s)	593, 681, 751, 853
BseGI	GGATG	1 cut(s)	807
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	3 cut(s)	153, 397, 555
BseMII	CTCAG	2 cut(s)	417, 870
BseNI	ACTGG	3 cut(s)	373, 660, 806
BseXI	GCAGC	2 cut(s)	531, 676
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	120, 262, 470
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	5 cut(s)	122, 237, 352, 361, 593
BslFI	GGGAC	2 cut(s)	610, 799
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	512, 863
BsmFI	GGGAC	2 cut(s)	610, 799
BsnI	GGCC	3 cut(s)	120, 262, 470
Bso31I	GGTCTC	1 cut(s)	863
BsoBI	CYCGRG	1 cut(s)	860
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	4 cut(s)	57, 171, 232, 433
BspACI	CCGC	4 cut(s)	37, 411, 415, 813
BspANI	GGCC	3 cut(s)	120, 262, 470
BspCNI	CTCAG	2 cut(s)	416, 871
BspLI	GGNNCC	4 cut(s)	234, 469, 598, 599
BspPI	GGATC	4 cut(s)	52, 227, 240, 441
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	3 cut(s)	153, 397, 555
BsrI	ACTGG	3 cut(s)	373, 660, 806
BssECI	CCNNGG	4 cut(s)	593, 681, 751, 853
BssMI	GATC	4 cut(s)	57, 171, 232, 433
BssT1I	CCWWGG	2 cut(s)	681, 751
Bst2UI	CCWGG	2 cut(s)	585, 854
Bst4CI	ACNGT	2 cut(s)	100, 526
BstC8I	GCNNGC	3 cut(s)	264, 413, 542
BstDEI	CTNAG	3 cut(s)	403, 873, 879
BstF5I	GGATG	1 cut(s)	807
BstH2I	RGCGCY	2 cut(s)	745, 851
BstHHI	GCGC	2 cut(s)	744, 850
BstKTI	GATC	4 cut(s)	60, 174, 235, 436
BstMAI	GTCTC	2 cut(s)	512, 863
BstMBI	GATC	4 cut(s)	57, 171, 232, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 399, 408
BstNI	CCWGG	2 cut(s)	585, 854
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	5 cut(s)	120, 235, 583, 592, 852
BstV1I	GCAGC	2 cut(s)	531, 676
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	232
BsuI	GTATCC	2 cut(s)	834, 876
BsuRI	GGCC	3 cut(s)	120, 262, 470
BtsCI	GGATG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	264, 413, 542
CfoI	GCGC	2 cut(s)	744, 850
Cfr13I	GGNCC	3 cut(s)	119, 468, 597
Csp6I	GTAC	2 cut(s)	422, 653
CviAII	CATG	1 cut(s)	670
CviQI	GTAC	2 cut(s)	422, 653
DdeI	CTNAG	3 cut(s)	403, 873, 879
DpnI	GATC	4 cut(s)	59, 173, 234, 435
DpnII	GATC	4 cut(s)	57, 171, 232, 433
Eco130I	CCWWGG	2 cut(s)	681, 751
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	863
Eco47I	GGWCC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	860
EcoO109I	RGGNCCY	2 cut(s)	468, 597
EcoRII	CCWGG	2 cut(s)	583, 852
EcoT14I	CCWWGG	2 cut(s)	681, 751
EcoT22I	ATGCAT	1 cut(s)	675
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	681, 751
FaeI	CATG	1 cut(s)	673
FaqI	GGGAC	2 cut(s)	610, 799
FatI	CATG	1 cut(s)	669
FauI	CCCGC	3 cut(s)	30, 404, 820
FauNDI	CATATG	1 cut(s)	715
Fnu4HI	GCNGC	2 cut(s)	545, 690
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	545, 690
GlaI	GCGC	2 cut(s)	743, 849
GluI	GCNGC	2 cut(s)	545, 690
GsuI	CTGGAG	1 cut(s)	836
HaeII	RGCGCY	2 cut(s)	745, 851
HaeIII	GGCC	3 cut(s)	120, 262, 470
HapII	CCGG	5 cut(s)	122, 237, 352, 361, 593
HhaI	GCGC	2 cut(s)	744, 850
Hin1II	CATG	1 cut(s)	673
Hin6I	GCGC	2 cut(s)	742, 848
HinP1I	GCGC	2 cut(s)	742, 848
HinfI	GANTC	4 cut(s)	146, 348, 631, 887
HpaII	CCGG	5 cut(s)	122, 237, 352, 361, 593
HphI	GGTGA	2 cut(s)	205, 428
Hpy166II	GTNNAC	2 cut(s)	422, 653
Hpy188I	TCNGA	5 cut(s)	310, 345, 735, 759, 823
Hpy188III	TCNNGA	1 cut(s)	860
Hpy8I	GTNNAC	2 cut(s)	422, 653
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	100, 526
HpyCH4IV	ACGT	2 cut(s)	89, 509
HpyCH4V	TGCA	7 cut(s)	27, 325, 560, 605, 644, 673, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 399, 408
HpyF3I	CTNAG	3 cut(s)	403, 873, 879
HpySE526I	ACGT	2 cut(s)	89, 509
Hsp92II	CATG	1 cut(s)	673
HspAI	GCGC	2 cut(s)	742, 848
KflI	GGGWCCC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	57, 171, 232, 433
LmnI	GCTCC	1 cut(s)	855
Lsp1109I	GCAGC	2 cut(s)	531, 676
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	2 cut(s)	89, 509
MaeIII	GTNAC	4 cut(s)	85, 209, 368, 529
MalI	GATC	4 cut(s)	59, 173, 234, 435
MboI	GATC	4 cut(s)	57, 171, 232, 433
MboII	GAAGA	5 cut(s)	287, 482, 733, 836, 839
MfeI	CAATTG	1 cut(s)	457
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	6 cut(s)	112, 253, 311, 457, 475, 766
MlyI	GAGTC	2 cut(s)	357, 881
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	5 cut(s)	71, 252, 275, 396, 703
Mph1103I	ATGCAT	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	3 cut(s)	299, 473, 647
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	5 cut(s)	122, 237, 352, 361, 593
MspR9I	CCNGG	5 cut(s)	122, 237, 585, 594, 854
MunI	CAATTG	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	585, 854
MwoI	GCNNNNNNNGC	3 cut(s)	131, 399, 408
NciI	CCSGG	3 cut(s)	122, 237, 594
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	4 cut(s)	57, 171, 232, 433
NlaIII	CATG	1 cut(s)	673
NlaIV	GGNNCC	4 cut(s)	234, 469, 598, 599
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	675
OliI	CACNNNNGTG	1 cut(s)	441
PaeR7I	CTCGAG	1 cut(s)	860
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	146, 631
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	546, 691
PleI	GAGTC	2 cut(s)	356, 881
PpsI	GAGTC	2 cut(s)	356, 881
PpuMI	RGGWCCY	1 cut(s)	597
PshAI	GACNNNNGTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	583, 852
PspGI	CCWGG	2 cut(s)	583, 852
PspN4I	GGNNCC	4 cut(s)	234, 469, 598, 599
PspPI	GGNCC	3 cut(s)	119, 468, 597
PspPPI	RGGWCCY	1 cut(s)	597
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	423, 654
RsaNI	GTAC	2 cut(s)	422, 653
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	299, 473, 647
SatI	GCNGC	2 cut(s)	545, 690
Sau3AI	GATC	4 cut(s)	57, 171, 232, 433
Sau96I	GGNCC	3 cut(s)	119, 468, 597
SchI	GAGTC	2 cut(s)	357, 881
ScrFI	CCNGG	5 cut(s)	122, 237, 585, 594, 854
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	860
SinI	GGWCC	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	515, 860
SmoI	CTYRAG	2 cut(s)	515, 860
Sse9I	AATT	6 cut(s)	112, 253, 311, 457, 475, 766
SsiI	CCGC	4 cut(s)	37, 411, 415, 813
StyD4I	CCNGG	5 cut(s)	120, 235, 583, 592, 852
StyI	CCWWGG	2 cut(s)	681, 751
TaaI	ACNGT	2 cut(s)	100, 526
TaiI	ACGT	2 cut(s)	92, 512
TaqI	TCGA	1 cut(s)	861
TasI	AATT	6 cut(s)	112, 253, 311, 457, 475, 766
TatI	WGTACW	2 cut(s)	421, 652
TfiI	GAWTC	2 cut(s)	146, 631
Tru1I	TTAA	3 cut(s)	299, 473, 647
Tru9I	TTAA	3 cut(s)	299, 473, 647
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	544, 689
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	288, 544, 796
TspGWI	ACGGA	2 cut(s)	245, 853
TspRI	CASTG	1 cut(s)	103
Van91I	CCANNNNNTGG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	2 cut(s)	311, 766
XhoI	CTCGAG	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.