Rmu_sc0001083.1_g000029

Belongs to the glycosyl hydrolase 28 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001083.1
Physical Location & Seq
Forward (+)
171971 .. 175987
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001083.1_g000029.1.cds

Sequence Viewer

Length: 1674 bp
atgtgctcggcattccatggcgaagcggaggcctgtagggctggattgcttatggcattacatcacggttggaagcaggtggagctggaaaccgactgcgctatcctagctactgcccttaaccaacaaatggaggataactctgaggttagtcggattctagatgattgtaagaattatttacatggttttgattgtattagagttcgacatatttatcgtgaaacaaatagtgtggcgaataggactcccccaaaagctcagttacctaagatggctatggtggtactactggttctggtttcattgtgcacaaacggagttgaaagccggaaggctaagaatgtggactgctttgagtactcagccataagttgcagagcccaaagtgcatcactggcagattttggaggagttggtgatggtatcacatcaaacaccaaggcttttcaggcagcaattcagcatctgagtcaatatgactcacaaggtggatcccaactttttgttcctgctgggaaatggttaactgggagcttcaacctcaccagccatttcactctctatctccacaaggatgctgttcttcttgcctctcaggatgagaatgaatggccagtgattgatccacttccatcgtacggtagaggaagggatactgctggaggaagattcatcagtctgatatttggaaccaacctcactgatgttgtagtaacaggggaaaatggcacaattgatggtcaaggtgaactatggtggcaaaaattccacaagggggagttaaagtacactcggccttacctgattgaaatcatgttctcagaaaatatccaaatttcgaaccttactttggttaattctccatcatggaatgttcatcctgtttacagcagcaatgttctagttcaaggccttacaatccttgccccagtaacgtctccaaacacagatgggatcaaccctgactcttgcacaaatactcgaattgaggactgttacattgtctctggagatgattgtatagccgtaaagagtggttgggatgagtatggtattgcctttgggatgccaaccaaagcgcttgtgatcagacgtttgacatgcatttctccatttagtgctgtgattgcactcggaagtgagatgtctggtgggatccaagatgtcagggctgaggatatccttgccattaacacggaatcaggagtcagaatcaaaactgctgtaggaagaggaggctttgtgaaagacatatatgtcagagggatgaccatgaaaaccatgaagtatgtattttggattgcaggagactatggatcacatgcagatgatggctatgatcctaatgcgcttccagtgatccagaacataaattatcatgatatggtggctgagaatgtaacaatggcaggtaaactggggggaataactggagatccatttactgggatttgcatatctaatgttacaattacaatggcaaagaagggaaagaaagtaccttggaactgcactgacgttgctgggatttcaagcagagtggttcctcagccgtgtgagcttctagcagaccagggtccggagaagatcggggcatgtgatttcccagaagaaagtcttccggttgataatatgcaacttcagctctgctcttacagaggaaagtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

557

Amino Acids

60.75

Weight (kDa)

5.37

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
AasI GACNNNNNNGTC 1 cut(s) 1259
Acc36I ACCTGC 2 cut(s) 67, 1403
AccB7I CCANNNNNTGG 2 cut(s) 130, 1448
AccIII TCCGGA 1 cut(s) 1582
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 614
AcsI RAATTY 2 cut(s) 767, 837
AcuI CTGAAG 1 cut(s) 1628
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 6 cut(s) 288, 362, 641, 791, 1503, 1670
AfeI AGCGCT 1 cut(s) 1083
AfiI CCNNNNNNNGG 6 cut(s) 130, 641, 778, 853, 1448, 1582
AgsI TTSAA 5 cut(s) 326, 541, 812, 911, 1536
AjnI CCWGG 1 cut(s) 1575
AjuI GAANNNNNNNTTGG 4 cut(s) 492, 524, 836, 868
AluBI AGCT 6 cut(s) 85, 110, 260, 537, 1564, 1648
AluI AGCT 6 cut(s) 85, 110, 260, 537, 1564, 1648
Alw21I GWGCWC 2 cut(s) 8, 314
Alw26I GTCTC 3 cut(s) 945, 1012, 1305
Alw44I GTGCAC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 469
Aor13HI TCCGGA 1 cut(s) 1582
Aor51HI AGCGCT 1 cut(s) 1083
AoxI GGCC 4 cut(s) 30, 614, 797, 913
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 455, 894
ApoI RAATTY 2 cut(s) 767, 837
Asp700I GAANNNNTTC 1 cut(s) 1620
AspLEI GCGC 3 cut(s) 101, 1084, 1354
AspS9I GGNCC 1 cut(s) 1580
AsuHPI GGTGA 3 cut(s) 431, 538, 761
AsuII TTCGAA 1 cut(s) 842
AvaII GGWCC 1 cut(s) 1580
BaeGI GKGCMC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 616
BamHI GGATCC 2 cut(s) 494, 1158
BanII GRGCYC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 1613
Bbv12I GWGCWC 2 cut(s) 8, 314
BbvCI CCTCAGC 2 cut(s) 1176, 1551
BbvI GCAGC 2 cut(s) 467, 906
BccI CCATC 7 cut(s) 268, 416, 643, 734, 874, 947, 1328
BceAI ACGGC 2 cut(s) 1013, 1540
BciT130I CCWGG 1 cut(s) 1577
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 1 cut(s) 1089
BcoDI GTCTC 3 cut(s) 945, 1012, 1305
BfaI CTAG 5 cut(s) 107, 161, 905, 1568, 1672
BfmI CTRYAG 2 cut(s) 34, 1227
BfoI RGCGCY 1 cut(s) 1085
BfuAI ACCTGC 2 cut(s) 67, 1403
BfuI GTATCC 1 cut(s) 649
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 2 cut(s) 456, 895
BlsI GCNGC 2 cut(s) 457, 896
BmcAI AGTACT 2 cut(s) 362, 1670
Bme1390I CCNGG 1 cut(s) 1577
Bme18I GGWCC 1 cut(s) 1580
BmgT120I GGNCC 1 cut(s) 1580
BmiI GGNNCC 5 cut(s) 496, 694, 1160, 1548, 1581
BmrFI CCNGG 1 cut(s) 1577
BmrI ACTGGG 4 cut(s) 540, 926, 1430, 1458
BmsI GCATC 4 cut(s) 401, 475, 568, 1059
BmuI ACTGGG 4 cut(s) 540, 926, 1430, 1458
BoxI GACNNNNGTC 1 cut(s) 1578
BpiI GAAGAC 1 cut(s) 1613
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 3 cut(s) 684, 1032, 1455
Bpu10I CCTNAGC 2 cut(s) 1176, 1551
Bpu14I TTCGAA 1 cut(s) 842
BsaBI GATNNNNATC 1 cut(s) 812
BsaJI CCNNGG 4 cut(s) 16, 441, 1505, 1576
BsaWI WCCGGW 2 cut(s) 1582, 1624
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 1230, 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 641, 778, 853, 1448, 1582
Bse1I ACTGG 9 cut(s) 297, 402, 535, 617, 932, 1358, 1425, 1438, 1453
Bse3DI GCAATG 1 cut(s) 904
Bse8I GATNNNNATC 1 cut(s) 812
BseAI TCCGGA 1 cut(s) 1582
BseBI CCWGG 1 cut(s) 1577
BseDI CCNNGG 4 cut(s) 16, 441, 1505, 1576
BseGI GGATG 6 cut(s) 583, 607, 880, 1051, 1074, 1275
BseJI GATNNNNATC 1 cut(s) 812
BseLI CCNNNNNNNGG 6 cut(s) 130, 641, 778, 853, 1448, 1582
BseMI GCAATG 1 cut(s) 904
BseMII CTCAG 9 cut(s) 135, 275, 378, 461, 611, 837, 1167, 1386, 1565
BseNI ACTGG 9 cut(s) 297, 402, 535, 617, 932, 1358, 1425, 1438, 1453
BseRI GAGGAG 2 cut(s) 426, 1251
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 2 cut(s) 467, 906
BseYI CCCAGC 2 cut(s) 515, 1526
BsgI GTGCAG 1 cut(s) 1498
BshFI GGCC 4 cut(s) 32, 616, 799, 915
BsiHKAI GWGCWC 2 cut(s) 8, 314
BsiSI CCGG 3 cut(s) 331, 1583, 1625
BsiWI CGTACG 1 cut(s) 639
BslI CCNNNNNNNGG 6 cut(s) 130, 641, 778, 853, 1448, 1582
BsmAI GTCTC 3 cut(s) 945, 1012, 1305
BsmBI CGTCTC 1 cut(s) 945
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 4 cut(s) 32, 616, 799, 915
Bsp119I TTCGAA 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 8, 314, 385
Bsp13I TCCGGA 1 cut(s) 1582
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 1 cut(s) 26
BspANI GGCC 4 cut(s) 32, 616, 799, 915
BspCNI CTCAG 9 cut(s) 136, 274, 377, 462, 610, 836, 1168, 1387, 1564
BspEI TCCGGA 1 cut(s) 1582
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 5 cut(s) 496, 694, 1160, 1548, 1581
BspMI ACCTGC 2 cut(s) 67, 1403
BspT104I TTCGAA 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 904
BsrI ACTGG 9 cut(s) 297, 402, 535, 617, 932, 1358, 1425, 1438, 1453
BssECI CCNNGG 4 cut(s) 16, 441, 1505, 1576
BssT1I CCWWGG 3 cut(s) 16, 441, 1505
Bst2UI CCWGG 1 cut(s) 1577
Bst4CI ACNGT 3 cut(s) 68, 644, 998
Bst6I CTCTTC 1 cut(s) 1228
BstBI TTCGAA 1 cut(s) 842
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 6 cut(s) 583, 607, 880, 1051, 1074, 1275
BstH2I RGCGCY 1 cut(s) 1085
BstHHI GCGC 3 cut(s) 101, 1084, 1354
BstMAI GTCTC 3 cut(s) 945, 1012, 1305
BstMWI GCNNNNNNNGC 9 cut(s) 38, 82, 107, 389, 398, 452, 1130, 1561, 1645
BstNI CCWGG 1 cut(s) 1577
BstNSI RCATGY 3 cut(s) 1107, 1328, 1602
BstPAI GACNNNNGTC 1 cut(s) 1578
BstSCI CCNGG 1 cut(s) 1575
BstSFI CTRYAG 2 cut(s) 34, 1227
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 467, 906
BstV2I GAAGAC 1 cut(s) 1613
BstX2I RGATCY 3 cut(s) 494, 1158, 1438
BstYI RGATCY 3 cut(s) 494, 1158, 1438
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 4 cut(s) 32, 616, 799, 915
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 6 cut(s) 583, 607, 880, 1051, 1074, 1275
BtsIMutI CAGTG 5 cut(s) 395, 624, 702, 1365, 1515
BveI ACCTGC 2 cut(s) 67, 1403
CaiI CAGNNNCTG 1 cut(s) 469
CciI TCATGA 1 cut(s) 1381
CfoI GCGC 3 cut(s) 101, 1084, 1354
Cfr13I GGNCC 1 cut(s) 1580
Csp6I GTAC 6 cut(s) 287, 361, 640, 790, 1502, 1669
CspCI CAANNNNNGTGG 4 cut(s) 216, 251, 1524, 1559
CviQI GTAC 6 cut(s) 287, 361, 640, 790, 1502, 1669
DraIII CACNNNGTG 1 cut(s) 491
DrdI GACNNNNNNGTC 1 cut(s) 1259
DseDI GACNNNNNNGTC 1 cut(s) 1259
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 1228
EarI CTCTTC 1 cut(s) 1228
Eco130I CCWWGG 3 cut(s) 16, 441, 1505
Eco147I AGGCCT 2 cut(s) 32, 915
Eco24I GRGCYC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 1 cut(s) 1580
Eco47III AGCGCT 1 cut(s) 1083
Eco57I CTGAAG 1 cut(s) 1628
EcoRII CCWGG 1 cut(s) 1575
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 3 cut(s) 16, 441, 1505
EcoT22I ATGCAT 1 cut(s) 1109
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 3 cut(s) 16, 441, 1505
Esp3I CGTCTC 1 cut(s) 945
FalI AAGNNNNNCTT 2 cut(s) 1605, 1637
FbaI TGATCA 1 cut(s) 1089
Fnu4HI GCNGC 2 cut(s) 456, 895
FokI GGATG 6 cut(s) 590, 614, 867, 1058, 1081, 1282
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 456, 895
FspBI CTAG 5 cut(s) 107, 161, 905, 1568, 1672
GlaI GCGC 3 cut(s) 100, 1083, 1353
GluI GCNGC 2 cut(s) 456, 895
GsaI CCCAGC 2 cut(s) 519, 1530
GsuI CTGGAG 3 cut(s) 684, 1032, 1455
HaeII RGCGCY 1 cut(s) 1085
HaeIII GGCC 4 cut(s) 32, 616, 799, 915
HapII CCGG 3 cut(s) 331, 1583, 1625
HhaI GCGC 3 cut(s) 101, 1084, 1354
Hin6I GCGC 3 cut(s) 99, 1082, 1352
HinP1I GCGC 3 cut(s) 99, 1082, 1352
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 9 cut(s) 157, 247, 472, 482, 672, 968, 1202, 1209, 1215
HpaI GTTAAC 1 cut(s) 528
HpaII CCGG 3 cut(s) 331, 1583, 1625
HphI GGTGA 3 cut(s) 431, 538, 761
Hpy166II GTNNAC 7 cut(s) 312, 349, 528, 752, 792, 889, 1418
Hpy188I TCNGA 9 cut(s) 145, 156, 471, 684, 826, 1094, 1139, 1214, 1265
Hpy188III TCNNGA 8 cut(s) 161, 221, 599, 1011, 1206, 1366, 1382, 1583
Hpy8I GTNNAC 7 cut(s) 312, 349, 528, 752, 792, 889, 1418
HpyAV CCTTC 3 cut(s) 328, 645, 1483
HpyCH4III ACNGT 3 cut(s) 68, 644, 998
HpyCH4IV ACGT 3 cut(s) 938, 1096, 1521
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 82, 107, 389, 398, 452, 1130, 1561, 1645
HpySE526I ACGT 3 cut(s) 938, 1096, 1521
HspAI GCGC 3 cut(s) 99, 1082, 1352
Kpn2I TCCGGA 1 cut(s) 1582
Ksp22I TGATCA 1 cut(s) 1089
KspAI GTTAAC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 82, 534
Lsp1109I GCAGC 2 cut(s) 467, 906
LweI GCATC 4 cut(s) 401, 475, 568, 1059
MaeI CTAG 5 cut(s) 107, 161, 905, 1568, 1672
MaeII ACGT 3 cut(s) 938, 1096, 1521
MaeIII GTNAC 6 cut(s) 264, 715, 934, 998, 1402, 1468
MboII GAAGA 6 cut(s) 578, 681, 1245, 1600, 1613, 1625
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 3 cut(s) 494, 1158, 1438
MhlI GDGCHC 3 cut(s) 8, 314, 385
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 9 cut(s) 175, 459, 735, 767, 837, 859, 987, 1375, 1473
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 5 cut(s) 241, 476, 481, 962, 1218
MmeI TCCRAC 2 cut(s) 50, 134
Mox20I TGGCCA 1 cut(s) 616
Mph1103I ATGCAT 1 cut(s) 1109
MroI TCCGGA 1 cut(s) 1582
MroXI GAANNNNTTC 1 cut(s) 1620
MscI TGGCCA 1 cut(s) 616
MseI TTAA 5 cut(s) 120, 527, 785, 858, 1194
MslI CAYNNNNRTG 2 cut(s) 576, 1329
Msp20I TGGCCA 1 cut(s) 616
MspI CCGG 3 cut(s) 331, 1583, 1625
MspR9I CCNGG 1 cut(s) 1577
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 1 cut(s) 1577
MwoI GCNNNNNNNGC 9 cut(s) 38, 82, 107, 389, 398, 452, 1130, 1561, 1645
NcoI CCATGG 1 cut(s) 16
NlaIV GGNNCC 5 cut(s) 496, 694, 1160, 1548, 1581
NmeAIII GCCGAG 1 cut(s) 775
NsiI ATGCAT 1 cut(s) 1109
NspI RCATGY 3 cut(s) 1107, 1328, 1602
NspV TTCGAA 1 cut(s) 842
PagI TCATGA 1 cut(s) 1381
PaqCI CACCTGC 1 cut(s) 67
PceI AGGCCT 2 cut(s) 32, 915
PctI GAATGC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 1620
PfeI GAWTC 4 cut(s) 157, 672, 1202, 1215
Pfl23II CGTACG 1 cut(s) 639
PflMI CCANNNNNTGG 2 cut(s) 130, 1448
PkrI GCNGC 2 cut(s) 457, 896
PleI GAGTC 5 cut(s) 241, 476, 480, 962, 1217
PpsI GAGTC 5 cut(s) 241, 476, 480, 962, 1217
PshAI GACNNNNGTC 1 cut(s) 1578
Psp6I CCWGG 1 cut(s) 1575
PspFI CCCAGC 2 cut(s) 515, 1526
PspGI CCWGG 1 cut(s) 1575
PspLI CGTACG 1 cut(s) 639
PspN4I GGNNCC 5 cut(s) 496, 694, 1160, 1548, 1581
PspPI GGNCC 1 cut(s) 1580
PsrI GAACNNNNNNTAC 2 cut(s) 279, 311
PstNI CAGNNNCTG 1 cut(s) 469
PsuI RGATCY 3 cut(s) 494, 1158, 1438
RsaI GTAC 6 cut(s) 288, 362, 641, 791, 1503, 1670
RsaNI GTAC 6 cut(s) 287, 361, 640, 790, 1502, 1669
RseI CAYNNNNRTG 2 cut(s) 576, 1329
SaqAI TTAA 5 cut(s) 120, 527, 785, 858, 1194
SatI GCNGC 2 cut(s) 456, 895
Sau96I GGNCC 1 cut(s) 1580
ScaI AGTACT 2 cut(s) 362, 1670
SchI GAGTC 5 cut(s) 241, 476, 481, 962, 1218
ScrFI CCNGG 1 cut(s) 1577
SduI GDGCHC 3 cut(s) 8, 314, 385
SfaNI GCATC 4 cut(s) 401, 475, 568, 1059
SfcI CTRYAG 2 cut(s) 34, 1227
SfuI TTCGAA 1 cut(s) 842
SinI GGWCC 1 cut(s) 1580
SmiMI CAYNNNNRTG 2 cut(s) 576, 1329
Sse9I AATT 9 cut(s) 175, 459, 735, 767, 837, 859, 987, 1375, 1473
SseBI AGGCCT 2 cut(s) 32, 915
SsiI CCGC 1 cut(s) 26
SspMI CTAG 5 cut(s) 107, 161, 905, 1568, 1672
StuI AGGCCT 2 cut(s) 32, 915
StyD4I CCNGG 1 cut(s) 1575
StyI CCWWGG 3 cut(s) 16, 441, 1505
TaaI ACNGT 3 cut(s) 68, 644, 998
TaiI ACGT 3 cut(s) 941, 1099, 1524
TaqI TCGA 3 cut(s) 208, 842, 985
TasI AATT 9 cut(s) 175, 459, 735, 767, 837, 859, 987, 1375, 1473
TatI WGTACW 3 cut(s) 360, 789, 1668
TfiI GAWTC 4 cut(s) 157, 672, 1202, 1215
Tru1I TTAA 5 cut(s) 120, 527, 785, 858, 1194
Tru9I TTAA 5 cut(s) 120, 527, 785, 858, 1194
TscAI CASTG 5 cut(s) 402, 624, 709, 1365, 1522
TseI GCWGC 2 cut(s) 455, 894
TspDTI ATGAA 6 cut(s) 294, 624, 664, 869, 1292, 1301
TspGWI ACGGA 2 cut(s) 333, 1214
TspRI CASTG 5 cut(s) 402, 624, 709, 1365, 1522
Van91I CCANNNNNTGG 2 cut(s) 130, 1448
VneI GTGCAC 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 1580
XapI RAATTY 2 cut(s) 767, 837
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 3 cut(s) 1107, 1328, 1602
XmnI GAANNNNTTC 1 cut(s) 1620
XspI CTAG 5 cut(s) 107, 161, 905, 1568, 1672
ZrmI AGTACT 2 cut(s) 362, 1670
Zsp2I ATGCAT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.