Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001299.1

Orthogroup ID

OG0011954

Physical Location & Seq

Genomic Coordinates Forward (+)

121002 .. 126181

Gene Structure 5180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

atgaacttcaggttccagaaccttctcggagcgccgtaccggggaggaaacgccgtcatcgtcaacaacacggagctaatctcaccggtggggaacagagtctccgtcaccaacctccgtgactccgagatagatattaagaaccgaatagttacttgcacagccggagacgaggcttgggccggcgatgaggcggcggcggcggcggctacccgattcgtttccggtgacccgttccagaaccttctcggagcgccgtaccggggagggaacgccgtcatcgtcaacaacacggagctaatctcaccggtggggaacagagtctccgtcaccaacctccgtgactccgagaccataaccctaccaatccaatcctcctccaacataacccgcctcgccgcctcccccgacggcgtcttcctcctcaccgtcgacgagaagcaccgctgcctcttcatcaacctccgccgccgcgtggttctccaccgcatttccttcaagagcgccgtcgccgccgtcaagttcagccccgacggcggttacattgcggtggccaccggtaagttggtccagatttggcggtcgcctgggtttaagaaagagttctttccgttcgaattggttaagacttttgctgattgtgatgataaggttacggcgttggagtggagccccgactcggtttatgtgctggccgggtcgaaagacttgactgctaggattttctgtatgaaaaagtttaaattgggaggggtaaagattaagccttttatgtttttggggcatagggatacagtagtgggtgtgtttttcggtgttgataagaatgccggtaaggtaagccgggtttatacagttgcgcgtgacggttatatgtttgtgtggggtttaagtagagatgatgaggaggtgccctctcccgggacaccggagagggatggggaaggcaatgtggaaggtgatggtagtgttgtcgtgaagaaaaggaagggtttcgagggaaatgacggtgagttggataaagaaggtgggtatttgataaataggaaatgggagttgttgaagaaagaaagttttgggcaggcgtcaatgaaggtgacggcatgtgattatcataggggactggatatgttggttgtggggttctcaaagggtgtatttgcgctgtatcaaatgccggatttcgtgtgcattcacagattgtcgatatctagagagaaaattacaacagcggtttttaatgagcttgggaattggctgacatttgggtgtgcaaaacttggacagttgcttgtatgggagtggcggtctgagagttatattttgaagcagcaggggcattactttgatgtgaattgtgttgcttattcgcctgattcacaactcttagccactggggcagatgataacaaagtgaaggtctggaatgtttcttcaggattctgttttgtaacattctctgagcatgaaaatgcaataactgcactccactttttggcgaacaaaaatacgctcttaagtgcctctttggatgggacggttcgtgcatgggattttttccgttatcgaaattttaagacatataccaccgcagaaccaagacaatttgtttctttgacagcaactcagagtggtgaagtgatttgtgctggaactcttgatacctttgagatttttgtttgggatatgaggacaggcaacgtgaaggacattcttagtggtcatgaaggtcctgtacatggtttggcgttttctcctacagatgcaaatgttttagcttcatcgtcgtgggacagaacagttcggttgtgggatgtttttgaatcaaaaggtggtgttgaaacatttccacacacacatgatgttcttacagtggtttaccgcccagatggaaagcaattggcttgcagcacattagaaggtcatattcatttctgggacccaattgatggtgtattaatgtataccattgagggtcgtagggatatttctggtggtcgtcttatgactgatcgtagaacagctgccaactcaagttcaggaaagttctttacaaccttgtgttattctgctgatgggagttacatattagctgggggaagtagtaaatacatctgcatgtatgatgttgctgatcaggtattactgcggaagtttcaaataactcacaatttatctttggatggagttcttgacttcttaaactcaaagaatatgacagatgctggccccctggatctaattgataatgatgacagtgatatagaagaaggtattgacaaacaaacccggggaaagttgggttatgatttaccagggtccatgcctaatcgtggaaggcctgttgtcagaactaaatgcctgaaaattgcacccactggtaggagcttctcagcagcaacaacagagggagttctagtttattctattgatgattcctttatctttgacccaactgatctcgacatggatgtcacacctgagggagttgatgcagcactgaatgaagaacaagtaaccaaagctttaatccttagtcttagactaaatgaagactctctaattaagaaatgtatttttgctgtcaattcaatagacatccctatggttgcctcatcaatccctaacagatatttagaaagattaattgaggtatttgcacatcttttggaaaaatgcccacatttggagttcatacttcagtggtgtcaggagatctgcaaagctcacggtaactccattcaacaaaattctcaaaaactgaagcctgctttaatatccttgcagaaagcaattacgagaacacatcaagatttggcaaatacatgtgattccaatgagtgtacgctccgttatttatgttcaaaaacctctattgaaaatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000151 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009743 GO:0009744 GO:0009987 GO:0010033 GO:0010119 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031461 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034388 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0065003 GO:0065007 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901700 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12 WD40

Protein Analysis

962

Amino Acids

106.58

Weight (kDa)

6.01

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	112 - 246	2.3e-11	THOC3 beta-propeller domain
WD40_Prp19	PF24814	113 - 236	3.3e-11	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	132 - 248	1.7e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	167 - 276	8e-10	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	216 - 424	3.2e-07	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	354 - 542	8.3e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	359 - 475	1.4e-06	WDR36/Utp21 first beta-propeller
WD40_Prp19	PF24814	359 - 553	4.5e-21	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	360 - 530	2.2e-18	CDC20/Fizzy WD40 domain
WDR55	PF24796	365 - 647	3.6e-22	WDR55
Beta-prop_WDR5	PF25175	366 - 554	8.5e-25	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	366 - 498	9.1e-15	THOC3 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	383 - 499	7.7e-06	MABP1/WDR62 first WD40 domain
Beta-prop_EML	PF23409	385 - 553	9.9e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	389 - 554	1.9e-24	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	412 - 546	7.1e-12	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	422 - 514	6.4e-06	WDR90, 4th beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	426 - 538	4.9e-09	WDR36/Utp21 first beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	426 - 646	4.2e-10	MABP1/WDR62 second WD40 domain
WD40_Gbeta	PF25391	433 - 605	6.7e-21	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	440 - 561	2.3e-15	WDR3 second beta-propeller domain
WD40	PF00400	443 - 476	1.6e-09	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	444 - 564	6.8e-10	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	445 - 523	1.4e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	450 - 569	7.6e-18	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	450 - 530	1.8e-14	WDHD1 first WD40 domain
EIF3I	PF24805	452 - 556	3.8e-07	EIF3I
Beta-prop_WDR75_1st	PF23869	457 - 536	1.9e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	482 - 518	2.6e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	491 - 664	5.8e-15	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	495 - 651	1.6e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	519 - 639	5.2e-10	WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st	PF24817	538 - 726	1.2e-17	WDHD1 first WD40 domain
EIF3I	PF24805	544 - 721	2e-06	EIF3I
Beta-prop_WDR5	PF25175	544 - 720	1.1e-17	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	557 - 724	1e-09	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st	PF25173	558 - 680	8.5e-15	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	558 - 720	1.8e-10	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	559 - 648	1.2e-16	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	570 - 659	8.8e-06	TEP-1 second beta-propeller
WD40	PF00400	570 - 605	1.5e-08	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	579 - 715	2.2e-08	Echinoderm microtubule-associated protein second beta-propeller
Utp12	PF04003	850 - 955	4.1e-23	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15440 AT1G15440
fragaria_vesca	FvH4_6g30400 FvH4_6g30400
malus_domestica	MD09G1221400.v1.1 MD17G1203900.v1.1
prunus_persica	Prupe.3G078900_v2.0.a1
pyrus_communis	pycom1094g00080 pycom17g20750
rosa_chinensis	RchiOBHm_Chr2g0136751
rosa_laevigata	RLG00000019569
rosa_multiflora	Rmu_sc0001299.1_g000021
rosa_roxburghii	Rroxscaffold_2G00108100
rosa_rugosa	Rorug02G0332800
rosa_samantha	Rh2AG383600 Rh2BG390300 Rh2CG370100 Rh2DG406900
rosa_wichuraiana	Rw2G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2471
AccB1I	GGYRCC	1 cut(s)	910
AccB7I	CCANNNNNTGG	2 cut(s)	1495, 1949
AccI	GTMKAC	2 cut(s)	432, 1964
AccII	CGCG	2 cut(s)	474, 862
AclWI	GGATC	1 cut(s)	2244
AcoI	YGGCCR	2 cut(s)	552, 693
AcsI	RAATTY	2 cut(s)	1570, 2749
AcuI	CTGAAG	3 cut(s)	1419, 2684, 2783
AcyI	GRCGYC	2 cut(s)	414, 1085
AfaI	GTAC	4 cut(s)	38, 260, 1737, 2845
AflII	CTTAAG	1 cut(s)	1516
AflIII	ACRYGT	1 cut(s)	2825
AgeI	ACCGGT	3 cut(s)	85, 307, 557
AjnI	CCWGG	3 cut(s)	586, 2232, 2314
AloI	GAACNNNNNNTCC	4 cut(s)	86, 118, 308, 340
AluBI	AGCT	9 cut(s)	76, 298, 1246, 1778, 2024, 2093, 2388, 2525, 2726
AluI	AGCT	9 cut(s)	76, 298, 1246, 1778, 2024, 2093, 2388, 2525, 2726
Alw26I	GTCTC	4 cut(s)	106, 162, 328, 344
AlwI	GGATC	1 cut(s)	2244
AlwNI	CAGNNNCTG	1 cut(s)	2225
Ama87I	CYCGRG	2 cut(s)	920, 2289
AoxI	GGCC	5 cut(s)	180, 552, 693, 2227, 2339
ApeKI	GCWGC	6 cut(s)	447, 1330, 1908, 2024, 2396, 2495
ApoI	RAATTY	2 cut(s)	1570, 2749
ArsI	GACNNNNNNTTYG	2 cut(s)	1404, 1436
AseI	ATTAAT	2 cut(s)	1958, 2645
AsiGI	ACCGGT	3 cut(s)	85, 307, 557
Asp700I	GAANNNNTTC	3 cut(s)	602, 992, 1845
AspLEI	GCGC	5 cut(s)	34, 256, 506, 862, 1165
AspS9I	GGNCC	6 cut(s)	180, 568, 1730, 1939, 2228, 2319
AsuC2I	CCSGG	8 cut(s)	41, 263, 697, 845, 921, 922, 2290, 2291
AsuII	TTCGAA	1 cut(s)	615
AvaI	CYCGRG	2 cut(s)	920, 2289
AvaII	GGWCC	4 cut(s)	568, 1730, 1939, 2319
AxyI	CCTNAGG	1 cut(s)	2481
BaeGI	GKGCMC	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	783, 816
BalI	TGGCCA	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	910
BanII	GRGCYC	1 cut(s)	674
BarI	GAAGNNNNNNTAC	2 cut(s)	1719, 1751
BbsI	GAAGAC	2 cut(s)	409, 2559
BbvI	GCAGC	6 cut(s)	434, 1342, 1920, 2011, 2408, 2507
BccI	CCATC	7 cut(s)	932, 956, 1526, 1883, 1943, 2069, 2177
BciT130I	CCWGG	3 cut(s)	588, 2234, 2316
BciVI	GTATCC	1 cut(s)	784
BclI	TGATCA	1 cut(s)	2134
BcnI	CCSGG	8 cut(s)	41, 263, 697, 845, 921, 922, 2290, 2291
BcoDI	GTCTC	4 cut(s)	106, 162, 328, 344
BfaI	CTAG	3 cut(s)	717, 1212, 2417
BfmI	CTRYAG	1 cut(s)	1758
BfoI	RGCGCY	3 cut(s)	35, 257, 507
BfrI	CTTAAG	1 cut(s)	1516
BfuI	GTATCC	1 cut(s)	784
BglI	GCCNNNNNGGC	2 cut(s)	534, 1397
BglII	AGATCT	1 cut(s)	2715
Bme18I	GGWCC	4 cut(s)	568, 1730, 1939, 2319
BmeT110I	CYCGRG	2 cut(s)	920, 2289
BmgT120I	GGNCC	6 cut(s)	180, 568, 1730, 1939, 2228, 2319
BmiI	GGNNCC	7 cut(s)	14, 671, 912, 1940, 1941, 2230, 2320
BmrI	ACTGGG	1 cut(s)	1404
BmsI	GCATC	3 cut(s)	1753, 2212, 2482
BmuI	ACTGGG	1 cut(s)	1404
BpiI	GAAGAC	2 cut(s)	409, 2559
BplI	GAGNNNNNCTC	6 cut(s)	65, 97, 287, 319, 899, 931
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	2017
BpuMI	CCSGG	8 cut(s)	41, 263, 697, 845, 921, 922, 2290, 2291
BsaHI	GRCGYC	2 cut(s)	414, 1085
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	8 cut(s)	40, 262, 587, 920, 2232, 2289, 2290, 2315
BsaWI	WCCGGW	5 cut(s)	85, 224, 307, 557, 928
Bse118I	RCCGGY	5 cut(s)	85, 182, 307, 557, 830
Bse1I	ACTGG	3 cut(s)	1128, 1399, 2383
Bse21I	CCTNAGG	1 cut(s)	2481
Bse3DI	GCAATG	2 cut(s)	543, 955
BseBI	CCWGG	3 cut(s)	588, 2234, 2316
BseDI	CCNNGG	8 cut(s)	40, 262, 587, 920, 2232, 2289, 2290, 2315
BseGI	GGATG	6 cut(s)	943, 1537, 1819, 2188, 2476, 2598
BseMI	GCAATG	2 cut(s)	543, 955
BseMII	CTCAG	5 cut(s)	1302, 1452, 1640, 2406, 2472
BseNI	ACTGG	3 cut(s)	1128, 1399, 2383
BseRI	GAGGAG	3 cut(s)	367, 413, 920
BseSI	GKGCMC	1 cut(s)	915
BseXI	GCAGC	6 cut(s)	434, 1342, 1920, 2011, 2408, 2507
BseYI	CCCAGC	1 cut(s)	2093
BsgI	GTGCAG	1 cut(s)	1467
Bsh1236I	CGCG	2 cut(s)	474, 862
Bsh1285I	CGRYCG	1 cut(s)	584
BshFI	GGCC	5 cut(s)	182, 554, 695, 2229, 2341
BshNI	GGYRCC	1 cut(s)	910
BshTI	ACCGGT	3 cut(s)	85, 307, 557
BsiEI	CGRYCG	1 cut(s)	584
BsiHKCI	CYCGRG	2 cut(s)	920, 2289
BslFI	GGGAC	5 cut(s)	937, 1134, 1549, 1805, 1952
BsmAI	GTCTC	4 cut(s)	106, 162, 328, 344
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	5 cut(s)	937, 1134, 1549, 1805, 1952
BsmI	GAATGC	2 cut(s)	832, 1191
BsnI	GGCC	5 cut(s)	182, 554, 695, 2229, 2341
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	920, 2289
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	674, 915
Bsp1407I	TGTACA	1 cut(s)	1735
Bsp143I	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
BspANI	GGCC	5 cut(s)	182, 554, 695, 2229, 2341
BspCNI	CTCAG	5 cut(s)	1303, 1453, 1639, 2405, 2473
BspFNI	CGCG	2 cut(s)	474, 862
BspHI	TCATGA	1 cut(s)	1723
BspLI	GGNNCC	7 cut(s)	14, 671, 912, 1940, 1941, 2230, 2320
BspPI	GGATC	1 cut(s)	2244
BspT104I	TTCGAA	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	910
BspTI	CTTAAG	1 cut(s)	1516
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	543, 955
BsrFI	RCCGGY	5 cut(s)	85, 182, 307, 557, 830
BsrGI	TGTACA	1 cut(s)	1735
BsrI	ACTGG	3 cut(s)	1128, 1399, 2383
BssAI	RCCGGY	5 cut(s)	85, 182, 307, 557, 830
BssECI	CCNNGG	8 cut(s)	40, 262, 587, 920, 2232, 2289, 2290, 2315
BssMI	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
BssNAI	GTATAC	1 cut(s)	1965
BssNI	GRCGYC	2 cut(s)	414, 1085
Bst1107I	GTATAC	1 cut(s)	1965
Bst2UI	CCWGG	3 cut(s)	588, 2234, 2316
Bst6I	CTCTTC	1 cut(s)	458
BstACI	GRCGYC	2 cut(s)	414, 1085
BstAFI	CTTAAG	1 cut(s)	1516
BstAPI	GCANNNNNTGC	1 cut(s)	1481
BstAUI	TGTACA	1 cut(s)	1735
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	6 cut(s)	184, 693, 1083, 1906, 2227, 2769
BstDEI	CTNAG	9 cut(s)	1311, 1387, 1461, 1626, 1715, 2392, 2481, 2534, 2540
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	6 cut(s)	943, 1537, 1819, 2188, 2476, 2598
BstFNI	CGCG	2 cut(s)	474, 862
BstH2I	RGCGCY	3 cut(s)	35, 257, 507
BstHHI	GCGC	5 cut(s)	34, 256, 506, 862, 1165
BstKTI	GATC	5 cut(s)	2014, 2137, 2239, 2461, 2718
BstMAI	GTCTC	4 cut(s)	106, 162, 328, 344
BstMBI	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
BstMCI	CGRYCG	1 cut(s)	584
BstMWI	GCNNNNNNNGC	8 cut(s)	200, 203, 206, 512, 534, 1336, 1397, 1481
BstNI	CCWGG	3 cut(s)	588, 2234, 2316
BstNSI	RCATGY	3 cut(s)	1107, 2122, 2829
BstPI	GGTNACC	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	1758
BstSLI	GKGCMC	1 cut(s)	915
BstUI	CGCG	2 cut(s)	474, 862
BstV1I	GCAGC	6 cut(s)	434, 1342, 1920, 2011, 2408, 2507
BstV2I	GAAGAC	2 cut(s)	409, 2559
BstX2I	RGATCY	2 cut(s)	2236, 2715
BstYI	RGATCY	2 cut(s)	2236, 2715
BstZ17I	GTATAC	1 cut(s)	1965
Bsu36I	CCTNAGG	1 cut(s)	2481
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	5 cut(s)	182, 554, 695, 2229, 2341
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	6 cut(s)	943, 1537, 1819, 2188, 2476, 2598
BtsIMutI	CAGTG	6 cut(s)	1392, 1878, 2263, 2376, 2498, 2708
Cac8I	GCNNGC	6 cut(s)	184, 693, 1083, 1906, 2227, 2769
CaiI	CAGNNNCTG	1 cut(s)	2225
CciI	TCATGA	1 cut(s)	1723
CfoI	GCGC	5 cut(s)	34, 256, 506, 862, 1165
Cfr10I	RCCGGY	5 cut(s)	85, 182, 307, 557, 830
Cfr13I	GGNCC	6 cut(s)	180, 568, 1730, 1939, 2228, 2319
Cfr9I	CCCGGG	2 cut(s)	920, 2289
CseI	GACGC	2 cut(s)	403, 1074
Csp6I	GTAC	4 cut(s)	37, 259, 1736, 2844
CspAI	ACCGGT	3 cut(s)	85, 307, 557
CviQI	GTAC	4 cut(s)	37, 259, 1736, 2844
DdeI	CTNAG	9 cut(s)	1311, 1387, 1461, 1626, 1715, 2392, 2481, 2534, 2540
DpnI	GATC	5 cut(s)	2013, 2136, 2238, 2460, 2717
DpnII	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
DraI	TTTAAA	1 cut(s)	742
DrdI	GACNNNNNNGTC	1 cut(s)	2471
DseDI	GACNNNNNNGTC	1 cut(s)	2471
EaeI	YGGCCR	2 cut(s)	552, 693
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
EciI	GGCGGA	1 cut(s)	455
Eco147I	AGGCCT	1 cut(s)	2341
Eco24I	GRGCYC	1 cut(s)	674
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	1209
Eco47I	GGWCC	4 cut(s)	568, 1730, 1939, 2319
Eco57I	CTGAAG	3 cut(s)	1419, 2684, 2783
Eco81I	CCTNAGG	1 cut(s)	2481
Eco88I	CYCGRG	2 cut(s)	920, 2289
Eco91I	GGTNACC	1 cut(s)	227
EcoO109I	RGGNCCY	2 cut(s)	1730, 1939
EcoO65I	GGTNACC	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	586, 2232, 2314
EcoRV	GATATC	1 cut(s)	1209
EcoT38I	GRGCYC	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	162
FalI	AAGNNNNNCTT	2 cut(s)	1510, 1542
FaqI	GGGAC	5 cut(s)	937, 1134, 1549, 1805, 1952
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	2134
FblI	GTMKAC	2 cut(s)	432, 1964
FokI	GGATG	6 cut(s)	950, 1544, 1826, 2195, 2483, 2585
FriOI	GRGCYC	1 cut(s)	674
FspBI	CTAG	3 cut(s)	717, 1212, 2417
GlaI	GCGC	5 cut(s)	33, 255, 505, 861, 1164
GsaI	CCCAGC	1 cut(s)	2097
HaeII	RGCGCY	3 cut(s)	35, 257, 507
HaeIII	GGCC	5 cut(s)	182, 554, 695, 2229, 2341
HgaI	GACGC	2 cut(s)	403, 1074
HhaI	GCGC	5 cut(s)	34, 256, 506, 862, 1165
Hin1I	GRCGYC	2 cut(s)	414, 1085
Hin6I	GCGC	5 cut(s)	32, 254, 504, 860, 1163
HinP1I	GCGC	5 cut(s)	32, 254, 504, 860, 1163
HincII	GTYRAC	3 cut(s)	64, 286, 433
HindII	GTYRAC	3 cut(s)	64, 286, 433
HindIII	AAGCTT	1 cut(s)	2523
Hpy166II	GTNNAC	6 cut(s)	64, 286, 433, 1879, 1965, 2844
Hpy188I	TCNGA	8 cut(s)	29, 127, 251, 349, 1312, 1462, 1629, 2351
Hpy8I	GTNNAC	6 cut(s)	64, 286, 433, 1879, 1965, 2844
Hpy99I	CGWCG	6 cut(s)	413, 434, 437, 512, 536, 1789
HpyCH4IV	ACGT	1 cut(s)	1701
HpyF10VI	GCNNNNNNNGC	8 cut(s)	200, 203, 206, 512, 534, 1336, 1397, 1481
HpyF3I	CTNAG	9 cut(s)	1311, 1387, 1461, 1626, 1715, 2392, 2481, 2534, 2540
HpySE526I	ACGT	1 cut(s)	1701
Hsp92I	GRCGYC	2 cut(s)	414, 1085
HspAI	GCGC	5 cut(s)	32, 254, 504, 860, 1163
KflI	GGGWCCC	1 cut(s)	1939
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	2134
Kzo9I	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
LmnI	GCTCC	7 cut(s)	29, 73, 251, 295, 669, 2385, 2853
Lsp1109I	GCAGC	6 cut(s)	434, 1342, 1920, 2011, 2408, 2507
LweI	GCATC	3 cut(s)	1753, 2212, 2482
MaeI	CTAG	3 cut(s)	717, 1212, 2417
MaeII	ACGT	1 cut(s)	1701
MalI	GATC	5 cut(s)	2013, 2136, 2238, 2460, 2717
MboI	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
MboII	GAAGA	8 cut(s)	409, 445, 991, 1075, 1425, 2279, 2519, 2564
MfeI	CAATTG	2 cut(s)	1898, 1944
MflI	RGATCY	2 cut(s)	2236, 2715
MhlI	GDGCHC	2 cut(s)	674, 915
MlsI	TGGCCA	1 cut(s)	554
MluNI	TGGCCA	1 cut(s)	554
MlyI	GAGTC	6 cut(s)	108, 116, 330, 338, 671, 2549
MmeI	TCCRAC	3 cut(s)	405, 642, 996
Mox20I	TGGCCA	1 cut(s)	554
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	3 cut(s)	602, 992, 1845
MscI	TGGCCA	1 cut(s)	554
MslI	CAYNNNNRTG	7 cut(s)	548, 1267, 1470, 1786, 1857, 2117, 2603
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	3 cut(s)	447, 1232, 2024
MspCI	CTTAAG	1 cut(s)	1516
MunI	CAATTG	2 cut(s)	1898, 1944
Mva1269I	GAATGC	2 cut(s)	832, 1191
MvaI	CCWGG	3 cut(s)	588, 2234, 2316
MvnI	CGCG	2 cut(s)	474, 862
MwoI	GCNNNNNNNGC	8 cut(s)	200, 203, 206, 512, 534, 1336, 1397, 1481
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	8 cut(s)	41, 263, 697, 845, 921, 922, 2290, 2291
NdeII	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
NgoMIV	GCCGGC	1 cut(s)	182
NlaIV	GGNNCC	7 cut(s)	14, 671, 912, 1940, 1941, 2230, 2320
NmuCI	GTSAC	8 cut(s)	106, 119, 227, 328, 341, 863, 1096, 2473
NspI	RCATGY	3 cut(s)	1107, 2122, 2829
NspV	TTCGAA	1 cut(s)	615
PagI	TCATGA	1 cut(s)	1723
PceI	AGGCCT	1 cut(s)	2341
PciI	ACATGT	1 cut(s)	2825
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 279
PctI	GAATGC	2 cut(s)	832, 1191
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	3 cut(s)	602, 992, 1845
PfeI	GAWTC	6 cut(s)	216, 1376, 1440, 1823, 2435, 2831
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	2 cut(s)	1495, 1949
PinAI	ACCGGT	3 cut(s)	85, 307, 557
PleI	GAGTC	6 cut(s)	107, 116, 329, 338, 671, 2549
PpsI	GAGTC	6 cut(s)	107, 116, 329, 338, 671, 2549
PpuMI	RGGWCCY	2 cut(s)	1730, 1939
PscI	ACATGT	1 cut(s)	2825
PshBI	ATTAAT	2 cut(s)	1958, 2645
Psp5II	RGGWCCY	2 cut(s)	1730, 1939
Psp6I	CCWGG	3 cut(s)	586, 2232, 2314
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	2093
PspGI	CCWGG	3 cut(s)	586, 2232, 2314
PspN4I	GGNNCC	7 cut(s)	14, 671, 912, 1940, 1941, 2230, 2320
PspPI	GGNCC	6 cut(s)	180, 568, 1730, 1939, 2228, 2319
PspPPI	RGGWCCY	2 cut(s)	1730, 1939
PsrI	GAACNNNNNNTAC	2 cut(s)	1645, 1677
PstNI	CAGNNNCTG	1 cut(s)	2225
PsuI	RGATCY	2 cut(s)	2236, 2715
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	2024
RsaI	GTAC	4 cut(s)	38, 260, 1737, 2845
RsaNI	GTAC	4 cut(s)	37, 259, 1736, 2844
RseI	CAYNNNNRTG	7 cut(s)	548, 1267, 1470, 1786, 1857, 2117, 2603
SalI	GTCGAC	1 cut(s)	431
Sau3AI	GATC	5 cut(s)	2011, 2134, 2236, 2458, 2715
Sau96I	GGNCC	6 cut(s)	180, 568, 1730, 1939, 2228, 2319
SchI	GAGTC	6 cut(s)	108, 116, 330, 338, 671, 2549
SduI	GDGCHC	2 cut(s)	674, 915
SfaNI	GCATC	3 cut(s)	1753, 2212, 2482
SfcI	CTRYAG	1 cut(s)	1758
SfuI	TTCGAA	1 cut(s)	615
SgrAI	CRCCGGYG	2 cut(s)	85, 307
SgrDI	CGTCGACG	1 cut(s)	431
SinI	GGWCC	4 cut(s)	568, 1730, 1939, 2319
SmaI	CCCGGG	2 cut(s)	922, 2291
SmiMI	CAYNNNNRTG	7 cut(s)	548, 1267, 1470, 1786, 1857, 2117, 2603
SmlI	CTYRAG	2 cut(s)	1516, 2032
SmoI	CTYRAG	2 cut(s)	1516, 2032
SseBI	AGGCCT	1 cut(s)	2341
SspMI	CTAG	3 cut(s)	717, 1212, 2417
StuI	AGGCCT	1 cut(s)	2341
TaiI	ACGT	1 cut(s)	1704
TaqI	TCGA	7 cut(s)	432, 615, 701, 996, 1205, 1567, 2463
TatI	WGTACW	1 cut(s)	1735
TauI	GCSGC	9 cut(s)	197, 200, 203, 206, 209, 401, 471, 474, 515
TfiI	GAWTC	6 cut(s)	216, 1376, 1440, 1823, 2435, 2831
TscAI	CASTG	6 cut(s)	1399, 1878, 2263, 2383, 2505, 2708
TseFI	GTSAC	8 cut(s)	106, 119, 227, 328, 341, 863, 1096, 2473
TseI	GCWGC	6 cut(s)	447, 1330, 1908, 2024, 2396, 2495
Tsp45I	GTSAC	8 cut(s)	106, 119, 227, 328, 341, 863, 1096, 2473
TspGWI	ACGGA	9 cut(s)	86, 94, 107, 308, 316, 329, 600, 1550, 2840
TspMI	CCCGGG	2 cut(s)	920, 2289
TspRI	CASTG	6 cut(s)	1399, 1878, 2263, 2383, 2505, 2708
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	2 cut(s)	1495, 1949
Vha464I	CTTAAG	1 cut(s)	1516
VpaK11BI	GGWCC	4 cut(s)	568, 1730, 1939, 2319
VspI	ATTAAT	2 cut(s)	1958, 2645
XapI	RAATTY	2 cut(s)	1570, 2749
XbaI	TCTAGA	1 cut(s)	1211
XceI	RCATGY	3 cut(s)	1107, 2122, 2829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmaI	CCCGGG	2 cut(s)	920, 2289
XmiI	GTMKAC	2 cut(s)	432, 1964
XmnI	GAANNNNTTC	3 cut(s)	602, 992, 1845
XspI	CTAG	3 cut(s)	717, 1212, 2417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.