Rmu_sc0001312.1_g000003

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001312.1
OG0009751
Physical Location & Seq
Reverse (-)
11773 .. 14290
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
atgtccaattcaacttctttgtccactgacgaagcagctagtgtttcttctggttccagactcccagatcactttgcttgcttaaaccctctttcagtttcaaccattatctcttctcctctcgaccatcagcagccgccgcagaagattaaaaagaagagaagcctccctggaaacccagaccctgatgccgaagtgatagcattatcccctaaaacgctcctggccacgaacagattcgtgtgcgagatttgcaacaaggggttccagagggaccagaacctccagcttcacaggagaggccacaacctgccatggaagctgaagcaaagaagcagcaaagacttgatcaaaaagagagcctatgtgtgccctgagccctcttgtgttcatcaccacccttcaagagcacttggggatctcacagggatcaagaagcacttttgcagaaagcatggggagaagaagtggaagtgtgacaagtgttcgaagatctatgctgttcaatctgattggaaagctcactccaaaacctgtggtacaagagaatatagatgtgactgtggaacccttttctccaggaaggatagcttcataactcacagagccttctgtgatgctctggctgaagaaagtgcaaggctctcagcaagccaattagctattgccaccacacctcaaatctctctcttccctttcccaaaccactctcacttcacaaacccacccccattaccattcaccaccctctctccctgggacccaccccacaaccctaaccctaatatcacccaaaacccacttcaccaccacgtcaagcctgaagaaactcaccaccacttccccctaaacccaactctcttccaagagaccccatcacctcaacacaagactctgataacctctcccttccagcacctccacgtcagcacacagccaacctcaagtgtcgccacgtcagctcacctgtcagccactgctctgctccaaaaggccgccaccattggcgcctccgccgctgggaagcagcagtctcagtcagctggcttggctgagtttgggacattaggagggtcacgtccggagaactcaccacgtggcagaagactgaccgtctga

Protein Analysis

372

Amino Acids

41.08

Weight (kDa)

9.55

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 118 - 152 7e-21 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 156 - 180 1.9e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 183 - 220 4.7e-24 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 1007
AccIII TCCGGA 1 cut(s) 1081
AciI CCGC 5 cut(s) 137, 140, 996, 1014, 1017
AclWI GGATC 2 cut(s) 426, 437
AcoI YGGCCR 1 cut(s) 225
AcuI CTGAAG 3 cut(s) 344, 648, 843
AcvI CACGTG 1 cut(s) 1097
AcyI GRCGYC 1 cut(s) 1008
AdeI CACNNNGTG 1 cut(s) 1097
AfaI GTAC 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 1020
AgsI TTSAA 4 cut(s) 12, 102, 405, 506
AhdI GACNNNNNGTC 1 cut(s) 1112
AjiI CACGTC 4 cut(s) 814, 925, 957, 1079
AjnI CCWGG 4 cut(s) 169, 222, 578, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 786, 818
AluBI AGCT 8 cut(s) 38, 289, 322, 521, 591, 662, 962, 1043
AluI AGCT 8 cut(s) 38, 289, 322, 521, 591, 662, 962, 1043
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 2 cut(s) 863, 1038
AlwI GGATC 2 cut(s) 426, 437
AlwNI CAGNNNCTG 2 cut(s) 185, 977
Aor13HI TCCGGA 1 cut(s) 1081
AoxI GGCC 3 cut(s) 225, 301, 993
ApeKI GCWGC 4 cut(s) 35, 133, 336, 1027
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 2 cut(s) 274, 760
AsuHPI GGTGA 8 cut(s) 386, 733, 781, 797, 824, 870, 956, 1083
AsuII TTCGAA 1 cut(s) 488
AvaII GGWCC 2 cut(s) 274, 760
BaeGI GKGCMC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 1007
BanII GRGCYC 1 cut(s) 381
BbrPI CACGTG 1 cut(s) 1097
BbsI GAAGAC 1 cut(s) 1111
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 4 cut(s) 47, 145, 348, 1039
BccI CCATC 2 cut(s) 135, 883
BciT130I CCWGG 4 cut(s) 171, 224, 580, 757
BclI TGATCA 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 863, 1038
BfaI CTAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 1011
BfuAI ACCTGC 1 cut(s) 318
BglII AGATCT 1 cut(s) 492
BisI GCNGC 8 cut(s) 36, 134, 137, 140, 337, 996, 1017, 1028
BlsI GCNGC 8 cut(s) 37, 135, 138, 141, 338, 997, 1018, 1029
Bme1390I CCNGG 4 cut(s) 171, 224, 580, 757
Bme18I GGWCC 2 cut(s) 274, 760
BmeRI GACNNNNNGTC 1 cut(s) 1112
BmgBI CACGTC 4 cut(s) 814, 925, 957, 1079
BmgT120I GGNCC 2 cut(s) 274, 760
BmiI GGNNCC 7 cut(s) 55, 266, 275, 568, 761, 762, 1009
BmrFI CCNGG 4 cut(s) 171, 224, 580, 757
BmsI GCATC 2 cut(s) 178, 607
BpiI GAAGAC 1 cut(s) 1111
BpmI CTGGAG 2 cut(s) 269, 562
Bpu10I CCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 928
BsaAI YACGTR 1 cut(s) 1097
BsaHI GRCGYC 1 cut(s) 1008
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 4 cut(s) 169, 314, 755, 756
BsaWI WCCGGW 1 cut(s) 1081
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 736, 766
Bsc4I CCNNNNNNNGG 1 cut(s) 1020
BseAI TCCGGA 1 cut(s) 1081
BseBI CCWGG 4 cut(s) 171, 224, 580, 757
BseDI CCNNGG 4 cut(s) 169, 314, 755, 756
BseLI CCNNNNNNNGG 1 cut(s) 1020
BseMII CTCAG 4 cut(s) 366, 660, 1044, 1049
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 4 cut(s) 47, 145, 348, 1039
BseYI CCCAGC 1 cut(s) 1019
BshFI GGCC 3 cut(s) 227, 303, 995
BshNI GGYRCC 1 cut(s) 1007
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 1082
BslFI GGGAC 3 cut(s) 287, 773, 1075
BslI CCNNNNNNNGG 1 cut(s) 1020
BsmAI GTCTC 2 cut(s) 863, 1038
BsmFI GGGAC 3 cut(s) 287, 773, 1075
BsnI GGCC 3 cut(s) 227, 303, 995
Bso31I GGTCTC 1 cut(s) 863
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 374, 381, 412
Bsp13I TCCGGA 1 cut(s) 1081
Bsp143I GATC 5 cut(s) 67, 348, 418, 429, 492
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 5 cut(s) 137, 140, 996, 1014, 1017
BspANI GGCC 3 cut(s) 227, 303, 995
BspCNI CTCAG 4 cut(s) 367, 659, 1045, 1048
BspEI TCCGGA 1 cut(s) 1081
BspLI GGNNCC 7 cut(s) 55, 266, 275, 568, 761, 762, 1009
BspMI ACCTGC 1 cut(s) 318
BspPI GGATC 2 cut(s) 426, 437
BspT104I TTCGAA 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 863
BssECI CCNNGG 4 cut(s) 169, 314, 755, 756
BssMI GATC 5 cut(s) 67, 348, 418, 429, 492
BssNI GRCGYC 1 cut(s) 1008
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 4 cut(s) 171, 224, 580, 757
Bst4CI ACNGT 2 cut(s) 563, 1114
Bst6I CTCTTC 4 cut(s) 118, 152, 695, 866
BstACI GRCGYC 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 3 cut(s) 79, 652, 1045
BstDEI CTNAG 4 cut(s) 375, 646, 1035, 1053
BstDSI CCRYGG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 5 cut(s) 70, 351, 421, 432, 495
BstMAI GTCTC 2 cut(s) 863, 1038
BstMBI GATC 5 cut(s) 67, 348, 418, 429, 492
BstMWI GCNNNNNNNGC 6 cut(s) 139, 252, 319, 959, 1016, 1049
BstNI CCWGG 4 cut(s) 171, 224, 580, 757
BstSCI CCNGG 4 cut(s) 169, 222, 578, 755
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 47, 145, 348, 1039
BstV2I GAAGAC 1 cut(s) 1111
BstX2I RGATCY 2 cut(s) 418, 492
BstYI RGATCY 2 cut(s) 418, 492
BsuRI GGCC 3 cut(s) 227, 303, 995
BtgI CCRYGG 1 cut(s) 314
BtrI CACGTC 4 cut(s) 814, 925, 957, 1079
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 2 cut(s) 24, 975
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 3 cut(s) 79, 652, 1045
CaiI CAGNNNCTG 2 cut(s) 185, 977
CfoI GCGC 1 cut(s) 1010
Cfr13I GGNCC 2 cut(s) 274, 760
Csp6I GTAC 1 cut(s) 540
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 2 cut(s) 315, 455
CviQI GTAC 1 cut(s) 540
DdeI CTNAG 4 cut(s) 375, 646, 1035, 1053
DinI GGCGCC 1 cut(s) 1009
DpnI GATC 5 cut(s) 69, 350, 420, 431, 494
DpnII GATC 5 cut(s) 67, 348, 418, 429, 492
DraIII CACNNNGTG 1 cut(s) 1097
DriI GACNNNNNGTC 1 cut(s) 1112
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 4 cut(s) 118, 152, 695, 866
Eam1105I GACNNNNNGTC 1 cut(s) 1112
EarI CTCTTC 4 cut(s) 118, 152, 695, 866
EciI GGCGGA 1 cut(s) 1003
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 863
Eco47I GGWCC 2 cut(s) 274, 760
Eco57I CTGAAG 3 cut(s) 344, 648, 843
Eco72I CACGTG 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 760
EcoRII CCWGG 4 cut(s) 169, 222, 578, 755
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 381
EgeI GGCGCC 1 cut(s) 1009
EheI GGCGCC 1 cut(s) 1009
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 2 cut(s) 318, 458
FaiI YATR 6 cut(s) 316, 366, 456, 498, 552, 596
FalI AAGNNNNNCTT 4 cut(s) 425, 457, 575, 607
FaqI GGGAC 3 cut(s) 287, 773, 1075
FatI CATG 2 cut(s) 314, 454
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 8 cut(s) 36, 134, 137, 140, 337, 996, 1017, 1028
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 8 cut(s) 36, 134, 137, 140, 337, 996, 1017, 1028
FspBI CTAG 1 cut(s) 39
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 8 cut(s) 36, 134, 137, 140, 337, 996, 1017, 1028
GsaI CCCAGC 1 cut(s) 1023
GsuI CTGGAG 2 cut(s) 269, 562
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 3 cut(s) 227, 303, 995
HapII CCGG 1 cut(s) 1082
HhaI GCGC 1 cut(s) 1010
Hin1I GRCGYC 1 cut(s) 1008
Hin1II CATG 2 cut(s) 318, 458
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HinfI GANTC 3 cut(s) 60, 237, 892
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 8 cut(s) 386, 733, 781, 797, 824, 870, 956, 1083
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 3 cut(s) 511, 897, 1118
Hpy188III TCNNGA 6 cut(s) 57, 122, 268, 405, 433, 1082
Hpy8I GTNNAC 1 cut(s) 24
HpyAV CCTTC 4 cut(s) 411, 577, 619, 919
HpyCH4III ACNGT 2 cut(s) 563, 1114
HpyCH4IV ACGT 5 cut(s) 813, 924, 956, 1078, 1096
HpyCH4V TGCA 3 cut(s) 255, 447, 638
HpyF10VI GCNNNNNNNGC 6 cut(s) 139, 252, 319, 959, 1016, 1049
HpyF3I CTNAG 4 cut(s) 375, 646, 1035, 1053
HpySE526I ACGT 5 cut(s) 813, 924, 956, 1078, 1096
Hsp92I GRCGYC 1 cut(s) 1008
Hsp92II CATG 2 cut(s) 318, 458
HspAI GCGC 1 cut(s) 1008
KasI GGCGCC 1 cut(s) 1007
KflI GGGWCCC 1 cut(s) 760
Kpn2I TCCGGA 1 cut(s) 1081
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 5 cut(s) 67, 348, 418, 429, 492
LmnI GCTCC 2 cut(s) 225, 990
Lsp1109I GCAGC 4 cut(s) 47, 145, 348, 1039
LweI GCATC 2 cut(s) 178, 607
MaeI CTAG 1 cut(s) 39
MaeII ACGT 5 cut(s) 813, 924, 956, 1078, 1096
MaeIII GTNAC 3 cut(s) 476, 557, 1074
MalI GATC 5 cut(s) 69, 350, 420, 431, 494
MboI GATC 5 cut(s) 67, 348, 418, 429, 492
MflI RGATCY 2 cut(s) 418, 492
MhlI GDGCHC 3 cut(s) 374, 381, 412
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 7, 656
MluNI TGGCCA 1 cut(s) 227
Mly113I GGCGCC 1 cut(s) 1008
MlyI GAGTC 2 cut(s) 54, 886
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 1081
MroXI GAANNNNTTC 1 cut(s) 236
MscI TGGCCA 1 cut(s) 227
MseI TTAA 2 cut(s) 83, 150
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 1019, 1043
MspI CCGG 1 cut(s) 1082
MspR9I CCNGG 4 cut(s) 171, 224, 580, 757
MvaI CCWGG 4 cut(s) 171, 224, 580, 757
MwoI GCNNNNNNNGC 6 cut(s) 139, 252, 319, 959, 1016, 1049
NarI GGCGCC 1 cut(s) 1008
NcoI CCATGG 1 cut(s) 314
NdeII GATC 5 cut(s) 67, 348, 418, 429, 492
NlaIII CATG 2 cut(s) 318, 458
NlaIV GGNNCC 7 cut(s) 55, 266, 275, 568, 761, 762, 1009
NmuCI GTSAC 3 cut(s) 476, 557, 1074
NspV TTCGAA 1 cut(s) 488
PasI CCCWGGG 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 578
PkrI GCNGC 8 cut(s) 37, 135, 138, 141, 338, 997, 1018, 1029
PleI GAGTC 2 cut(s) 54, 886
PluTI GGCGCC 1 cut(s) 1011
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 2 cut(s) 54, 886
Ppu21I YACGTR 1 cut(s) 1097
PpuMI RGGWCCY 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 760
Psp6I CCWGG 4 cut(s) 169, 222, 578, 755
PspCI CACGTG 1 cut(s) 1097
PspFI CCCAGC 1 cut(s) 1019
PspGI CCWGG 4 cut(s) 169, 222, 578, 755
PspN4I GGNNCC 7 cut(s) 55, 266, 275, 568, 761, 762, 1009
PspPI GGNCC 2 cut(s) 274, 760
PspPPI RGGWCCY 1 cut(s) 760
PstNI CAGNNNCTG 2 cut(s) 185, 977
PsuI RGATCY 2 cut(s) 418, 492
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 1 cut(s) 541
RsaNI GTAC 1 cut(s) 540
SaqAI TTAA 2 cut(s) 83, 150
SatI GCNGC 8 cut(s) 36, 134, 137, 140, 337, 996, 1017, 1028
Sau3AI GATC 5 cut(s) 67, 348, 418, 429, 492
Sau96I GGNCC 2 cut(s) 274, 760
SchI GAGTC 2 cut(s) 54, 886
ScrFI CCNGG 4 cut(s) 171, 224, 580, 757
SduI GDGCHC 3 cut(s) 374, 381, 412
SfaNI GCATC 2 cut(s) 178, 607
SfoI GGCGCC 1 cut(s) 1009
SfuI TTCGAA 1 cut(s) 488
SinI GGWCC 2 cut(s) 274, 760
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
Sse9I AATT 2 cut(s) 7, 656
SsiI CCGC 5 cut(s) 137, 140, 996, 1014, 1017
SspDI GGCGCC 1 cut(s) 1007
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 4 cut(s) 169, 222, 578, 755
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 563, 1114
TaiI ACGT 5 cut(s) 816, 927, 959, 1081, 1099
TaqI TCGA 2 cut(s) 123, 488
TasI AATT 2 cut(s) 7, 656
TauI GCSGC 4 cut(s) 139, 142, 998, 1019
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 2 cut(s) 83, 150
Tru9I TTAA 2 cut(s) 83, 150
TscAI CASTG 2 cut(s) 31, 982
TseFI GTSAC 3 cut(s) 476, 557, 1074
TseI GCWGC 4 cut(s) 35, 133, 336, 1027
Tsp45I GTSAC 3 cut(s) 476, 557, 1074
TspDTI ATGAA 2 cut(s) 380, 583
TspRI CASTG 2 cut(s) 31, 982
VpaK11BI GGWCC 2 cut(s) 274, 760
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.