Rmu_sc0001314.1_g000002

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001314.1
Physical Location & Seq
Forward (+)
11862 .. 15788
3927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001314.1_g000002.1.cds

Sequence Viewer

Length: 1950 bp
atgagttcagatactggtaaagtgaagaaatgtggatttaatatagagggactggcttttactgatcgtagaaaaagacaatcaaagtccgttaattttggatttccgaggggatcagatggactaaagacatttggtagatcaataagaactggggtcagccgtgcagtgtttccagaagatcttaaagtttcggataaaaggatatatgatccacaagacaagtccctcctgttgtggaacaggctttttgtcatagcatgtatctttgctatatccattgatcctctgttcttttatctcccgatattcgatcaagagcaggaatgcctctctatcgatagaagagtagcaacaacatctttaactatgagatctttaatagatgttttctacctttttcgcatggctttacagtttcgtacagcttatattgcaccatcatctcgggtgttcggaagaggtgaacttgtgatagatacttcacagatagcacagcgatatctacaccgttacttctttgttgatcttgcttctgtgctgcccgtaccacagattgtggtttttatatacttgcatggaaatggtgcagcagtactgtctacgaaacaagcattgctatatgttgtctgggttcagttactgcctagatttgcccgcttactagctttaaactcagaccttaagaagagtgcgggttctttcgccgaaagtgcttgggctggggctgcatactatttgctttggtttatgcttgctgctcaagtcactggggctgcctggtacttattagctgtagaacgatatgacacatgctggcgggaagcttgtcataagagtggaaaatgtcgagtagaatttttgtactgtggcagtgagggaatgaagggatacaatgagtggggcaaaatcaaaggggatgttctaaaaaagagctgcagcggttcagatgatgaccccgacggctttaactttggaatcttcaaaaacgctgtatcttcaggaacctatcttcagtctctcacaattcgtcttgaggagatgaggattaaaaggcgtgactctgagcagtggatgcaccatcgctggcttccacaggatcttagagaaagggttcggcgctacgatcaatataaatggttggagactcgaggtgtagatgaggagagcattgtccagactctcccaaaagatctcaggagggacattaaacggcatctctgcttgaatttggtcagaagggtgcctcttttcgccaatatggatgagcggttgcttgatgcgatctgtgagcgtctgaaaccaagtttatgcacagagagtacatttatagtccgggaaggggaccctgttgttgagatgttattcatcatacgtggtcgcctagaaagtgtaaccacagatggtggtaggagtggattttacaacagtggtttgctccaggaaggtgacttttgtggagaagagctcctaacatgggcactggacccgaaagcaggctctaacttaccatcatctactcgaacagtgaaggctttaactgaggttgaggcatttgctttggaagcagaggagttgaaatttgttgccagtcagtttaggcaccttcatagcagacaggttcagtacaccttccggttttactcacagcaatggaggacttgggcggcctgctttatccaagctgcttggcgccactacaggagaaaagtggcggcagaaaaacaaagagaggaggaatttggatacagtgatggagatgatgatggtggtggtggcggcggtgattttaaaagcggttctggtaaatatgcgcttggtgccgcagtctttgcatcccgctttgcagcaaatgctcttcgtggtcataggcttcgcagtgaaagcaccagggggctactgctgcagaagccctctgaacctgacttctcggcttatgatgataaataa

Protein Analysis

649

Amino Acids

74.08

Weight (kDa)

9.06

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011651)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 1243, 1602, 1692, 1820
AccBSI CCGCTC 1 cut(s) 1270
AccI GTMKAC 1 cut(s) 602
AclWI GGATC 4 cut(s) 121, 206, 278, 1107
AcsI RAATTY 4 cut(s) 857, 1228, 1580, 1739
AcuI CTGAAG 2 cut(s) 984, 998
AcyI GRCGYC 1 cut(s) 1693
AfaI GTAC 7 cut(s) 424, 549, 597, 785, 866, 1324, 1628
AfiI CCNNNNNNNGG 3 cut(s) 1342, 1477, 1496
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 3 cut(s) 985, 1228, 1579
AjnI CCWGG 3 cut(s) 779, 1440, 1889
AluBI AGCT 7 cut(s) 428, 668, 794, 827, 936, 1468, 1685
AluI AGCT 7 cut(s) 428, 668, 794, 827, 936, 1468, 1685
Alw21I GWGCWC 1 cut(s) 1470
Alw26I GTCTC 2 cut(s) 1023, 1139
AlwI GGATC 4 cut(s) 121, 206, 278, 1107
AlwNI CAGNNNCTG 2 cut(s) 14, 643
Ama87I CYCGRG 2 cut(s) 447, 1149
AoxI GGCC 1 cut(s) 1668
ApoI RAATTY 4 cut(s) 857, 1228, 1580, 1739
Asp700I GAANNNNTTC 1 cut(s) 1113
AspLEI GCGC 3 cut(s) 1122, 1695, 1816
AspS9I GGNCC 2 cut(s) 1345, 1486
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 3 cut(s) 476, 1460, 1796
AvaI CYCGRG 2 cut(s) 447, 1149
AvaII GGWCC 2 cut(s) 1345, 1486
BaeGI GKGCMC 1 cut(s) 1483
BanI GGYRCC 4 cut(s) 1243, 1602, 1692, 1820
BanII GRGCYC 1 cut(s) 1470
Bbv12I GWGCWC 1 cut(s) 1470
BccI CCATC 7 cut(s) 113, 448, 1089, 1397, 1519, 1748, 1760
BceAI ACGGC 3 cut(s) 147, 979, 1229
BciT130I CCWGG 3 cut(s) 781, 1442, 1891
BciVI GTATCC 2 cut(s) 884, 1739
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 2 cut(s) 1023, 1139
BfaI CTAG 3 cut(s) 648, 665, 1385
BfmI CTRYAG 4 cut(s) 795, 937, 1699, 1904
BfoI RGCGCY 2 cut(s) 1123, 1696
BfrI CTTAAG 1 cut(s) 683
BfuI GTATCC 2 cut(s) 884, 1739
BglII AGATCT 3 cut(s) 181, 374, 1192
BmcAI AGTACT 1 cut(s) 597
Bme1390I CCNGG 4 cut(s) 781, 1337, 1442, 1891
Bme18I GGWCC 2 cut(s) 1345, 1486
BmeT110I CYCGRG 2 cut(s) 447, 1149
BmgT120I GGNCC 2 cut(s) 1345, 1486
BmiI GGNNCC 8 cut(s) 1006, 1245, 1346, 1347, 1488, 1604, 1694, 1822
BmrFI CCNGG 4 cut(s) 781, 1337, 1442, 1891
BmrI ACTGGG 2 cut(s) 162, 780
BmsI GCATC 4 cut(s) 1065, 1225, 1270, 1844
BmuI ACTGGG 2 cut(s) 162, 780
BplI GAGNNNNNCTC 2 cut(s) 1452, 1484
BpmI CTGGAG 1 cut(s) 1424
BpuEI CTTGAG 2 cut(s) 747, 1055
BpuMI CCSGG 1 cut(s) 1337
Bsa29I ATCGAT 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 1376
BsaHI GRCGYC 1 cut(s) 1693
BsaJI CCNNGG 2 cut(s) 107, 1890
BsaWI WCCGGW 1 cut(s) 1635
Bsc4I CCNNNNNNNGG 3 cut(s) 1342, 1477, 1496
Bse1I ACTGG 6 cut(s) 19, 57, 157, 775, 1488, 1590
Bse3DI GCAATG 2 cut(s) 614, 1658
BseBI CCWGG 3 cut(s) 781, 1442, 1891
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 107, 1890
BseGI GGATG 4 cut(s) 925, 1080, 1270, 1835
BseLI CCNNNNNNNGG 3 cut(s) 1342, 1477, 1496
BseMI GCAATG 2 cut(s) 614, 1658
BseMII CTCAG 4 cut(s) 690, 1056, 1210, 1533
BseNI ACTGG 6 cut(s) 19, 57, 157, 775, 1488, 1590
BseRI GAGGAG 4 cut(s) 1052, 1178, 1586, 1748
BseSI GKGCMC 1 cut(s) 1483
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 2 cut(s) 186, 609
BshFI GGCC 1 cut(s) 1670
BshNI GGYRCC 4 cut(s) 1243, 1602, 1692, 1820
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 1470
BsiHKCI CYCGRG 2 cut(s) 447, 1149
BsiSI CCGG 2 cut(s) 1336, 1636
BslFI GGGAC 4 cut(s) 63, 211, 1217, 1358
BslI CCNNNNNNNGG 3 cut(s) 1342, 1477, 1496
BsmAI GTCTC 2 cut(s) 1023, 1139
BsmFI GGGAC 4 cut(s) 63, 211, 1217, 1358
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 1670
BsoBI CYCGRG 2 cut(s) 447, 1149
Bsp1286I GDGCHC 2 cut(s) 1470, 1483
BspANI GGCC 1 cut(s) 1670
BspCNI CTCAG 4 cut(s) 689, 1057, 1209, 1534
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 8 cut(s) 1006, 1245, 1346, 1347, 1488, 1604, 1694, 1822
BspMAI CTGCAG 2 cut(s) 941, 1908
BspPI GGATC 4 cut(s) 121, 206, 278, 1107
BspQI GCTCTTC 2 cut(s) 1458, 1863
BspT107I GGYRCC 4 cut(s) 1243, 1602, 1692, 1820
BspTI CTTAAG 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 1270
BsrDI GCAATG 2 cut(s) 614, 1658
BsrI ACTGG 6 cut(s) 19, 57, 157, 775, 1488, 1590
BssECI CCNNGG 2 cut(s) 107, 1890
BssNI GRCGYC 1 cut(s) 1693
Bst2UI CCWGG 3 cut(s) 781, 1442, 1891
Bst4CI ACNGT 7 cut(s) 417, 512, 600, 869, 1430, 1528, 1751
Bst6I CTCTTC 5 cut(s) 340, 454, 683, 1458, 1863
BstACI GRCGYC 1 cut(s) 1693
BstAFI CTTAAG 1 cut(s) 683
BstAPI GCANNNNNTGC 3 cut(s) 1075, 1832, 1853
BstBAI YACGTR 1 cut(s) 1376
BstC8I GCNNGC 6 cut(s) 658, 756, 818, 1088, 1498, 1672
BstDEI CTNAG 5 cut(s) 676, 1065, 1103, 1196, 1542
BstF5I GGATG 4 cut(s) 925, 1080, 1270, 1835
BstH2I RGCGCY 2 cut(s) 1123, 1696
BstHHI GCGC 3 cut(s) 1122, 1695, 1816
BstMAI GTCTC 2 cut(s) 1023, 1139
BstNI CCWGG 3 cut(s) 781, 1442, 1891
BstNSI RCATGY 2 cut(s) 264, 816
BstSCI CCNGG 4 cut(s) 779, 1335, 1440, 1889
BstSFI CTRYAG 4 cut(s) 795, 937, 1699, 1904
BstSLI GKGCMC 1 cut(s) 1483
BstX2I RGATCY 4 cut(s) 181, 374, 1099, 1192
BstYI RGATCY 4 cut(s) 181, 374, 1099, 1192
Bsu15I ATCGAT 1 cut(s) 339
BsuI GTATCC 2 cut(s) 884, 1739
BsuRI GGCC 1 cut(s) 1670
BsuTUI ATCGAT 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 1067
BtsCI GGATG 4 cut(s) 925, 1080, 1270, 1835
BtsI GCAGTG 4 cut(s) 174, 880, 1076, 1885
BtsIMutI CAGTG 9 cut(s) 174, 768, 880, 1076, 1435, 1481, 1533, 1756, 1885
Cac8I GCNNGC 6 cut(s) 658, 756, 818, 1088, 1498, 1672
CaiI CAGNNNCTG 2 cut(s) 14, 643
CfoI GCGC 3 cut(s) 1122, 1695, 1816
Cfr13I GGNCC 2 cut(s) 1345, 1486
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 1283
Csp6I GTAC 7 cut(s) 423, 548, 596, 784, 865, 1323, 1627
CviAII CATG 5 cut(s) 261, 406, 578, 813, 1476
CviQI GTAC 7 cut(s) 423, 548, 596, 784, 865, 1323, 1627
DdeI CTNAG 5 cut(s) 676, 1065, 1103, 1196, 1542
DinI GGCGCC 1 cut(s) 1694
DraI TTTAAA 2 cut(s) 672, 1792
Eam1104I CTCTTC 5 cut(s) 340, 454, 683, 1458, 1863
EarI CTCTTC 5 cut(s) 340, 454, 683, 1458, 1863
Ecl136II GAGCTC 1 cut(s) 1468
Eco24I GRGCYC 1 cut(s) 1470
Eco32I GATATC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 1345, 1486
Eco53kI GAGCTC 1 cut(s) 1468
Eco57I CTGAAG 2 cut(s) 984, 998
Eco88I CYCGRG 2 cut(s) 447, 1149
EcoICRI GAGCTC 1 cut(s) 1468
EcoO109I RGGNCCY 1 cut(s) 1345
EcoRII CCWGG 3 cut(s) 779, 1440, 1889
EcoRV GATATC 1 cut(s) 503
EcoT38I GRGCYC 1 cut(s) 1470
EgeI GGCGCC 1 cut(s) 1694
EheI GGCGCC 1 cut(s) 1694
FaeI CATG 5 cut(s) 264, 409, 581, 816, 1479
FaqI GGGAC 4 cut(s) 63, 211, 1217, 1358
FatI CATG 5 cut(s) 260, 405, 577, 812, 1475
FauI CCCGC 4 cut(s) 665, 688, 813, 1847
FblI GTMKAC 1 cut(s) 602
FokI GGATG 4 cut(s) 932, 1087, 1277, 1822
FriOI GRGCYC 1 cut(s) 1470
FspBI CTAG 3 cut(s) 648, 665, 1385
GlaI GCGC 3 cut(s) 1121, 1694, 1815
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 1424
HaeII RGCGCY 2 cut(s) 1123, 1696
HaeIII GGCC 1 cut(s) 1670
HapII CCGG 2 cut(s) 1336, 1636
HgaI GACGC 1 cut(s) 1283
HhaI GCGC 3 cut(s) 1122, 1695, 1816
Hin1I GRCGYC 1 cut(s) 1693
Hin1II CATG 5 cut(s) 264, 409, 581, 816, 1479
Hin6I GCGC 3 cut(s) 1120, 1693, 1814
HinP1I GCGC 3 cut(s) 1120, 1693, 1814
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 4 cut(s) 978, 1061, 1147, 1180
HpaII CCGG 2 cut(s) 1336, 1636
HphI GGTGA 3 cut(s) 476, 1460, 1796
Hpy166II GTNNAC 3 cut(s) 467, 603, 1629
Hpy188III TCNNGA 7 cut(s) 176, 304, 317, 1002, 1034, 1177, 1198
Hpy8I GTNNAC 3 cut(s) 467, 603, 1629
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 7 cut(s) 880, 1233, 1334, 1439, 1525, 1616, 1642
HpyCH4III ACNGT 7 cut(s) 417, 512, 600, 869, 1430, 1528, 1751
HpyCH4IV ACGT 1 cut(s) 1375
HpyF3I CTNAG 5 cut(s) 676, 1065, 1103, 1196, 1542
HpySE526I ACGT 1 cut(s) 1375
Hsp92I GRCGYC 1 cut(s) 1693
Hsp92II CATG 5 cut(s) 264, 409, 581, 816, 1479
HspAI GCGC 3 cut(s) 1120, 1693, 1814
KasI GGCGCC 1 cut(s) 1692
KflI GGGWCCC 1 cut(s) 1345
LguI GCTCTTC 2 cut(s) 1458, 1863
LmnI GCTCC 2 cut(s) 1443, 1473
LweI GCATC 4 cut(s) 1065, 1225, 1270, 1844
MaeI CTAG 3 cut(s) 648, 665, 1385
MaeII ACGT 1 cut(s) 1375
MaeIII GTNAC 6 cut(s) 512, 639, 766, 1058, 1393, 1448
MbiI CCGCTC 1 cut(s) 1270
MflI RGATCY 4 cut(s) 181, 374, 1099, 1192
MhlI GDGCHC 2 cut(s) 1470, 1483
MluCI AATT 6 cut(s) 94, 857, 1026, 1228, 1580, 1739
Mly113I GGCGCC 1 cut(s) 1693
MlyI GAGTC 3 cut(s) 1055, 1141, 1174
MmeI TCCRAC 1 cut(s) 1122
MroXI GAANNNNTTC 1 cut(s) 1113
MslI CAYNNNNRTG 3 cut(s) 582, 837, 1651
MspA1I CMGCKG 1 cut(s) 942
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 2 cut(s) 1336, 1636
MspR9I CCNGG 4 cut(s) 781, 1337, 1442, 1891
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 3 cut(s) 781, 1442, 1891
NarI GGCGCC 1 cut(s) 1693
NciI CCSGG 1 cut(s) 1337
NlaIII CATG 5 cut(s) 264, 409, 581, 816, 1479
NlaIV GGNNCC 8 cut(s) 1006, 1245, 1346, 1347, 1488, 1604, 1694, 1822
NmeAIII GCCGAG 1 cut(s) 1910
NmuCI GTSAC 3 cut(s) 766, 1058, 1448
NspI RCATGY 2 cut(s) 264, 816
PaeR7I CTCGAG 1 cut(s) 1149
PciSI GCTCTTC 2 cut(s) 1458, 1863
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 1 cut(s) 1113
PfeI GAWTC 1 cut(s) 978
PfoI TCCNGGA 2 cut(s) 1335, 1440
PleI GAGTC 3 cut(s) 1055, 1141, 1174
PluTI GGCGCC 1 cut(s) 1696
PpsI GAGTC 3 cut(s) 1055, 1141, 1174
Ppu21I YACGTR 1 cut(s) 1376
PpuMI RGGWCCY 1 cut(s) 1345
Psp124BI GAGCTC 1 cut(s) 1470
Psp5II RGGWCCY 1 cut(s) 1345
Psp6I CCWGG 3 cut(s) 779, 1440, 1889
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 3 cut(s) 779, 1440, 1889
PspN4I GGNNCC 8 cut(s) 1006, 1245, 1346, 1347, 1488, 1604, 1694, 1822
PspPI GGNCC 2 cut(s) 1345, 1486
PspPPI RGGWCCY 1 cut(s) 1345
PspXI VCTCGAGB 1 cut(s) 1149
PstI CTGCAG 2 cut(s) 941, 1908
PstNI CAGNNNCTG 2 cut(s) 14, 643
PsuI RGATCY 4 cut(s) 181, 374, 1099, 1192
RsaI GTAC 7 cut(s) 424, 549, 597, 785, 866, 1324, 1628
RsaNI GTAC 7 cut(s) 423, 548, 596, 784, 865, 1323, 1627
RseI CAYNNNNRTG 3 cut(s) 582, 837, 1651
SacI GAGCTC 1 cut(s) 1470
SapI GCTCTTC 2 cut(s) 1458, 1863
Sau96I GGNCC 2 cut(s) 1345, 1486
ScaI AGTACT 1 cut(s) 597
SchI GAGTC 3 cut(s) 1055, 1141, 1174
ScrFI CCNGG 4 cut(s) 781, 1337, 1442, 1891
SduI GDGCHC 2 cut(s) 1470, 1483
SfaNI GCATC 4 cut(s) 1065, 1225, 1270, 1844
SfcI CTRYAG 4 cut(s) 795, 937, 1699, 1904
SfoI GGCGCC 1 cut(s) 1694
Sfr274I CTCGAG 1 cut(s) 1149
SinI GGWCC 2 cut(s) 1345, 1486
SlaI CTCGAG 1 cut(s) 1149
SmiMI CAYNNNNRTG 3 cut(s) 582, 837, 1651
SmlI CTYRAG 4 cut(s) 683, 762, 1034, 1149
SmoI CTYRAG 4 cut(s) 683, 762, 1034, 1149
Sse9I AATT 6 cut(s) 94, 857, 1026, 1228, 1580, 1739
SspDI GGCGCC 1 cut(s) 1692
SspMI CTAG 3 cut(s) 648, 665, 1385
SstI GAGCTC 1 cut(s) 1470
StyD4I CCNGG 4 cut(s) 779, 1335, 1440, 1889
TaaI ACNGT 7 cut(s) 417, 512, 600, 869, 1430, 1528, 1751
TaiI ACGT 1 cut(s) 1378
TaqI TCGA 5 cut(s) 312, 339, 850, 1150, 1522
TasI AATT 6 cut(s) 94, 857, 1026, 1228, 1580, 1739
TatI WGTACW 4 cut(s) 595, 864, 1322, 1626
TauI GCSGC 4 cut(s) 1670, 1718, 1782, 1826
TfiI GAWTC 1 cut(s) 978
TscAI CASTG 9 cut(s) 174, 775, 880, 1076, 1435, 1488, 1533, 1756, 1885
TseFI GTSAC 3 cut(s) 766, 1058, 1448
Tsp45I GTSAC 3 cut(s) 766, 1058, 1448
TspDTI ATGAA 3 cut(s) 899, 1357, 1598
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 9 cut(s) 174, 775, 880, 1076, 1435, 1488, 1533, 1756, 1885
Vha464I CTTAAG 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 1345, 1486
XapI RAATTY 4 cut(s) 857, 1228, 1580, 1739
XceI RCATGY 2 cut(s) 264, 816
XhoI CTCGAG 1 cut(s) 1149
XmiI GTMKAC 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 1113
XspI CTAG 3 cut(s) 648, 665, 1385
ZrmI AGTACT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.