Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011651

Physical Location & Seq

Genomic Coordinates Forward (+)

53433584 .. 53438497

Gene Structure 4914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG360700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGTACAAGTCGCAGTTTATTGGAGGTCAGAAAGAGAAATTTGTGAGGTTAGATGATTTGGATTCTACAACGTCAATGAGTTCAGATACTGGTAAAGTGAAGAAATGTGGATTTAATATAGAGGGACTGGCTTTTACTGATCGTAGAAAAAGACAATCAAAGTCCGTTAATTTTGGATTTCCGAGGGGATCAGATGGACTAAAGACATTTGGTAGATCAATTAGAACCGGGGTCAGCCGTGCAGTGTTTCCAGAAGATCTTAAAGTTTCGGATAAAAGGATATATGATCCACAAGACAAGTCCCTCCTGTTGTGGAACAGGCTTTTTGTCATAGCATGTATCTTTGCTATATCCATTGATCCTCTGTTCTTTTATCTCCCGATATTCGATCAAGAGCAGGAATGCCTCTCTATCGATAGAAGAGTAGCAACAACATCTTTAACTATGCGATCTTTAATAGATGTTTTCTACCTTTTGCGCATGGCTTTACAGTTTCGTACAGCTTATATTGCACCATCATCTCGGGTGTTCGGAAGAGGTGAACTTGTGATAGATACTTCACAGATAGCACAGCGATATCTACACCGTTACTTCTTTGTTGATCTTGCTTCTGTGCTGCCCGTACCACAGATTGTGGTTTTTATATACTTGCATGGAAATGGTGCAGCAGTACTGTCTACGAAACAAGCATTGCTATATGTTGTCTGGGTTCAGTTACTGCCTAGATTTGCCCGCTTACTAGCTTTAAACTCAGACCTTAAGAAGAGTGCGGGTTCTTTCGCCGAAAGTGCTTGGGCTGGGGCTGCATACTATTTGCTTTGGTTTATGCTTGCTGCTCAAGTCACTGGGGCTGCCTGGTACTTATTAGCTGTAGAACGCTATGACACATGCTGGCGGGAAGCTTGTCATAAGAGTGGAAAATGTCGAGTAGAATTTTTGTACTGTGGCAGTGAGGGAATGAAGGGATACAATGAGTGGGGAAAAATCAAAGGGGATGTTCTAAAAAAGAGCTGCAGCGGTTCAGATGATGACCCCGACGGCTTTAACTTTGGAATCTTCAAAAACGCTACCTATCTTCAGTCTCTCACAATTCGTCTTGAGGAGATGAGGATTAAAAGGCGTGACTCTGAGCAGTGGATGCACCATCGCTGGCTTCCACAGGATCTTAGAGAAAGGGTTCGGCGCTACGATCAATATAAATGGTTGGAGACTCGAGGTGTAGATGAGGAGAGCATTGTCCAGACTCTCCCAAAAGATCTCAGGAGGGACATTAAACGGCATCTCTGCTTGAATTTGGTCAGAAGGGTGCTCGGAATTTGGGAGTTGAAACATGTTGAAAAGGACAACCAAAGCAGATTCAAATGGTTAGTTGACCGTGCTACTATAACTCTCAAAGATGTGGAGGTGTTCTACCCGAACAAGATTGCTGTGCTAGCTTTTCACACTAGCAATGATGATAGTGTATCTAACAGCACATTACGACGTACAACCTTAATGGAGGAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

502

Amino Acids

58.11

Weight (kDa)

9.34

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	105 - 335	4.2e-11	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15990 AT1G19780 AT1G19780
fragaria_vesca	FvH4_6g28560 FvH4_6g28560
malus_domestica	MD05G1041200.v1.1
prunus_persica	Prupe.3G099200_v2.0.a1
pyrus_communis	pycom05g03400
rosa_chinensis	RchiOBHm_Chr2g0132901
rosa_laevigata	RLG00000019289
rosa_multiflora	Rmu_sc0001314.1_g000002 Rmu_sc0016946.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111640
rosa_rugosa	Rorug02G0308100
rosa_samantha	Rh2AG360700 Rh2BG366600 Rh2CG343900 Rh2DG383600
rosa_wichuraiana	Rw2G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	677
AciI	CCGC	4 cut(s)	733, 770, 895, 1017
AclWI	GGATC	4 cut(s)	196, 281, 353, 1170
AcsI	RAATTY	4 cut(s)	38, 932, 1291, 1314
AcuI	CTGAAG	1 cut(s)	1061
AfaI	GTAC	7 cut(s)	5, 499, 624, 672, 860, 941, 1486
AflII	CTTAAG	1 cut(s)	758
AflIII	ACRYGT	1 cut(s)	1330
AgsI	TTSAA	5 cut(s)	1060, 1291, 1327, 1337, 1360
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	6 cut(s)	503, 743, 869, 902, 1011, 1436
AluI	AGCT	6 cut(s)	503, 743, 869, 902, 1011, 1436
Alw21I	GWGCWC	1 cut(s)	1311
Alw26I	GTCTC	2 cut(s)	1086, 1202
AlwI	GGATC	4 cut(s)	196, 281, 353, 1170
AlwNI	CAGNNNCTG	2 cut(s)	89, 718
Ama87I	CYCGRG	2 cut(s)	522, 1212
ApeKI	GCWGC	7 cut(s)	616, 665, 803, 833, 851, 1011, 1014
ApoI	RAATTY	4 cut(s)	38, 932, 1291, 1314
Asp700I	GAANNNNTTC	1 cut(s)	1176
AspLEI	GCGC	2 cut(s)	480, 1185
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	551
AsuNHI	GCTAGC	1 cut(s)	1432
AvaI	CYCGRG	2 cut(s)	522, 1212
Bbv12I	GWGCWC	1 cut(s)	1311
BbvI	GCAGC	7 cut(s)	603, 677, 790, 820, 838, 998, 1026
BccI	CCATC	3 cut(s)	188, 523, 1152
BceAI	ACGGC	3 cut(s)	222, 1054, 1292
BciT130I	CCWGG	1 cut(s)	856
BciVI	GTATCC	1 cut(s)	959
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	1086, 1202
BfaI	CTAG	4 cut(s)	723, 740, 1433, 1446
BfmI	CTRYAG	2 cut(s)	870, 1012
BfoI	RGCGCY	1 cut(s)	1186
BfrI	CTTAAG	1 cut(s)	758
BfuI	GTATCC	1 cut(s)	959
BglII	AGATCT	2 cut(s)	256, 1255
BisI	GCNGC	7 cut(s)	617, 666, 804, 834, 852, 1012, 1015
BlsI	GCNGC	7 cut(s)	618, 667, 805, 835, 853, 1013, 1016
BmcAI	AGTACT	1 cut(s)	672
Bme1390I	CCNGG	2 cut(s)	229, 856
BmeT110I	CYCGRG	2 cut(s)	522, 1212
BmrFI	CCNGG	2 cut(s)	229, 856
BmrI	ACTGGG	1 cut(s)	855
BmsI	GCATC	2 cut(s)	1128, 1288
BmtI	GCTAGC	1 cut(s)	1436
BmuI	ACTGGG	1 cut(s)	855
BpuEI	CTTGAG	2 cut(s)	822, 1118
BpuMI	CCSGG	1 cut(s)	229
Bsa29I	ATCGAT	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	182, 228
Bse1I	ACTGG	3 cut(s)	94, 132, 850
Bse3DI	GCAATG	2 cut(s)	689, 1456
BseBI	CCWGG	1 cut(s)	856
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	182, 228
BseGI	GGATG	2 cut(s)	1000, 1143
BseMI	GCAATG	2 cut(s)	689, 1456
BseMII	CTCAG	3 cut(s)	765, 1119, 1273
BseNI	ACTGG	3 cut(s)	94, 132, 850
BseRI	GAGGAG	2 cut(s)	1115, 1241
BseXI	GCAGC	7 cut(s)	603, 677, 790, 820, 838, 998, 1026
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	2 cut(s)	261, 684
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	1311
BsiHKCI	CYCGRG	2 cut(s)	522, 1212
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	3 cut(s)	138, 286, 1280
BsmAI	GTCTC	2 cut(s)	1086, 1202
BsmFI	GGGAC	3 cut(s)	138, 286, 1280
BsmI	GAATGC	1 cut(s)	407
BsoBI	CYCGRG	2 cut(s)	522, 1212
Bsp1286I	GDGCHC	1 cut(s)	1311
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	4 cut(s)	733, 770, 895, 1017
BspCNI	CTCAG	3 cut(s)	764, 1120, 1272
BspDI	ATCGAT	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	1016
BspOI	GCTAGC	1 cut(s)	1436
BspPI	GGATC	4 cut(s)	196, 281, 353, 1170
BspTI	CTTAAG	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	689, 1456
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	94, 132, 850
BssECI	CCNNGG	2 cut(s)	182, 228
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	5 cut(s)	492, 587, 675, 944, 1376
Bst6I	CTCTTC	3 cut(s)	415, 529, 758
BstAFI	CTTAAG	1 cut(s)	758
BstAPI	GCANNNNNTGC	1 cut(s)	1138
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	5 cut(s)	733, 831, 893, 1151, 1434
BstDEI	CTNAG	4 cut(s)	751, 1128, 1166, 1259
BstF5I	GGATG	2 cut(s)	1000, 1143
BstH2I	RGCGCY	1 cut(s)	1186
BstHHI	GCGC	2 cut(s)	480, 1185
BstMAI	GTCTC	2 cut(s)	1086, 1202
BstMWI	GCNNNNNNNGC	5 cut(s)	509, 788, 803, 1138, 1433
BstNI	CCWGG	1 cut(s)	856
BstNSI	RCATGY	3 cut(s)	339, 891, 1334
BstSCI	CCNGG	2 cut(s)	227, 854
BstSFI	CTRYAG	2 cut(s)	870, 1012
BstV1I	GCAGC	7 cut(s)	603, 677, 790, 820, 838, 998, 1026
BstX2I	RGATCY	3 cut(s)	256, 1162, 1255
BstYI	RGATCY	3 cut(s)	256, 1162, 1255
Bsu15I	ATCGAT	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	959
BsuTUI	ATCGAT	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	2 cut(s)	1000, 1143
BtsI	GCAGTG	3 cut(s)	249, 955, 1139
BtsIMutI	CAGTG	4 cut(s)	249, 843, 955, 1139
Cac8I	GCNNGC	5 cut(s)	733, 831, 893, 1151, 1434
CaiI	CAGNNNCTG	2 cut(s)	89, 718
CfoI	GCGC	2 cut(s)	480, 1185
ClaI	ATCGAT	1 cut(s)	414
Csp6I	GTAC	7 cut(s)	4, 498, 623, 671, 859, 940, 1485
CviAII	CATG	5 cut(s)	336, 481, 653, 888, 1331
CviQI	GTAC	7 cut(s)	4, 498, 623, 671, 859, 940, 1485
DdeI	CTNAG	4 cut(s)	751, 1128, 1166, 1259
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	3 cut(s)	415, 529, 758
EarI	CTCTTC	3 cut(s)	415, 529, 758
Eco32I	GATATC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	1061
Eco88I	CYCGRG	2 cut(s)	522, 1212
EcoRII	CCWGG	1 cut(s)	854
EcoRV	GATATC	1 cut(s)	578
FaeI	CATG	5 cut(s)	339, 484, 656, 891, 1334
FaqI	GGGAC	3 cut(s)	138, 286, 1280
FatI	CATG	5 cut(s)	335, 480, 652, 887, 1330
FauI	CCCGC	3 cut(s)	740, 763, 888
FblI	GTMKAC	1 cut(s)	677
Fnu4HI	GCNGC	7 cut(s)	617, 666, 804, 834, 852, 1012, 1015
FokI	GGATG	2 cut(s)	1007, 1150
Fsp4HI	GCNGC	7 cut(s)	617, 666, 804, 834, 852, 1012, 1015
FspBI	CTAG	4 cut(s)	723, 740, 1433, 1446
FspI	TGCGCA	1 cut(s)	479
GlaI	GCGC	2 cut(s)	479, 1184
GluI	GCNGC	7 cut(s)	617, 666, 804, 834, 852, 1012, 1015
GsaI	CCCAGC	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	1186
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	2 cut(s)	480, 1185
Hin1II	CATG	5 cut(s)	339, 484, 656, 891, 1334
Hin6I	GCGC	2 cut(s)	478, 1183
HinP1I	GCGC	2 cut(s)	478, 1183
HincII	GTYRAC	1 cut(s)	1372
HindII	GTYRAC	1 cut(s)	1372
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	6 cut(s)	62, 1053, 1124, 1210, 1243, 1356
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	542, 678, 1372
Hpy188III	TCNNGA	6 cut(s)	251, 379, 392, 1097, 1240, 1261
Hpy8I	GTNNAC	3 cut(s)	542, 678, 1372
Hpy99I	CGWCG	2 cut(s)	1040, 1485
HpyAV	CCTTC	2 cut(s)	955, 1296
HpyCH4III	ACNGT	5 cut(s)	492, 587, 675, 944, 1376
HpyCH4IV	ACGT	2 cut(s)	71, 1483
HpyCH4V	TGCA	7 cut(s)	242, 512, 652, 665, 806, 1014, 1141
HpyF10VI	GCNNNNNNNGC	5 cut(s)	509, 788, 803, 1138, 1433
HpyF3I	CTNAG	4 cut(s)	751, 1128, 1166, 1259
HpySE526I	ACGT	2 cut(s)	71, 1483
Hsp92II	CATG	5 cut(s)	339, 484, 656, 891, 1334
HspAI	GCGC	2 cut(s)	478, 1183
Lsp1109I	GCAGC	7 cut(s)	603, 677, 790, 820, 838, 998, 1026
LweI	GCATC	2 cut(s)	1128, 1288
MaeI	CTAG	4 cut(s)	723, 740, 1433, 1446
MaeII	ACGT	2 cut(s)	71, 1483
MaeIII	GTNAC	4 cut(s)	587, 714, 841, 1121
MboII	GAAGA	7 cut(s)	112, 266, 432, 546, 775, 1048, 1067
MflI	RGATCY	3 cut(s)	256, 1162, 1255
MhlI	GDGCHC	1 cut(s)	1311
MluCI	AATT	7 cut(s)	38, 169, 219, 932, 1089, 1291, 1314
MlyI	GAGTC	3 cut(s)	1118, 1204, 1237
MmeI	TCCRAC	1 cut(s)	1185
MroXI	GAANNNNTTC	1 cut(s)	1176
MslI	CAYNNNNRTG	2 cut(s)	657, 912
MspA1I	CMGCKG	1 cut(s)	1017
MspCI	CTTAAG	1 cut(s)	758
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	229, 856
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	856
MwoI	GCNNNNNNNGC	5 cut(s)	509, 788, 803, 1138, 1433
NciI	CCSGG	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	1432
NlaIII	CATG	5 cut(s)	339, 484, 656, 891, 1334
NmuCI	GTSAC	2 cut(s)	841, 1121
NsbI	TGCGCA	1 cut(s)	479
NspI	RCATGY	3 cut(s)	339, 891, 1334
PaeR7I	CTCGAG	1 cut(s)	1212
PciI	ACATGT	1 cut(s)	1330
PctI	GAATGC	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	3 cut(s)	62, 1053, 1356
PkrI	GCNGC	7 cut(s)	618, 667, 805, 835, 853, 1013, 1016
PleI	GAGTC	3 cut(s)	1118, 1204, 1237
PpsI	GAGTC	3 cut(s)	1118, 1204, 1237
PscI	ACATGT	1 cut(s)	1330
Psp6I	CCWGG	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	854
PspXI	VCTCGAGB	1 cut(s)	1212
PstI	CTGCAG	1 cut(s)	1016
PstNI	CAGNNNCTG	2 cut(s)	89, 718
PsuI	RGATCY	3 cut(s)	256, 1162, 1255
RsaI	GTAC	7 cut(s)	5, 499, 624, 672, 860, 941, 1486
RsaNI	GTAC	7 cut(s)	4, 498, 623, 671, 859, 940, 1485
RseI	CAYNNNNRTG	2 cut(s)	657, 912
SatI	GCNGC	7 cut(s)	617, 666, 804, 834, 852, 1012, 1015
ScaI	AGTACT	1 cut(s)	672
SchI	GAGTC	3 cut(s)	1118, 1204, 1237
ScrFI	CCNGG	2 cut(s)	229, 856
SduI	GDGCHC	1 cut(s)	1311
SfaNI	GCATC	2 cut(s)	1128, 1288
SfcI	CTRYAG	2 cut(s)	870, 1012
Sfr274I	CTCGAG	1 cut(s)	1212
SlaI	CTCGAG	1 cut(s)	1212
SmiMI	CAYNNNNRTG	2 cut(s)	657, 912
SmlI	CTYRAG	4 cut(s)	758, 837, 1097, 1212
SmoI	CTYRAG	4 cut(s)	758, 837, 1097, 1212
Sse9I	AATT	7 cut(s)	38, 169, 219, 932, 1089, 1291, 1314
SsiI	CCGC	4 cut(s)	733, 770, 895, 1017
SspMI	CTAG	4 cut(s)	723, 740, 1433, 1446
StyD4I	CCNGG	2 cut(s)	227, 854
TaaI	ACNGT	5 cut(s)	492, 587, 675, 944, 1376
TaiI	ACGT	2 cut(s)	74, 1486
TaqI	TCGA	4 cut(s)	387, 414, 925, 1213
TasI	AATT	7 cut(s)	38, 169, 219, 932, 1089, 1291, 1314
TatI	WGTACW	3 cut(s)	3, 670, 939
TfiI	GAWTC	3 cut(s)	62, 1053, 1356
TscAI	CASTG	4 cut(s)	249, 850, 955, 1139
TseFI	GTSAC	2 cut(s)	841, 1121
TseI	GCWGC	7 cut(s)	616, 665, 803, 833, 851, 1011, 1014
Tsp45I	GTSAC	2 cut(s)	841, 1121
TspDTI	ATGAA	1 cut(s)	974
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	4 cut(s)	249, 850, 955, 1139
Vha464I	CTTAAG	1 cut(s)	758
XapI	RAATTY	4 cut(s)	38, 932, 1291, 1314
XceI	RCATGY	3 cut(s)	339, 891, 1334
XhoI	CTCGAG	1 cut(s)	1212
XmiI	GTMKAC	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	4 cut(s)	723, 740, 1433, 1446
ZrmI	AGTACT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.