Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011651

Physical Location & Seq

Genomic Coordinates Forward (+)

47412482 .. 47413740

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAACATTGTACAGACCTATCTTCAGTCTCTCACAATTCGTCTTGAGGAGATGAGGATTAAAAGGCGTGACTCTGAGCAGTGGATGCACCATCGCTGGCTTCCACAGGATCTTAGAGAAAGGGTTCGGCGCTATGATCAATATAAATGGTTGGAGACTCGAGGTGTAGATGAGGAGAGCATTGTCCAGACTCTCCCAAAAGATCTCAGGAGGGACATTAAACGGCATCTCTGCTTGAATTTGGTCAGAAGGGTGCCTCTTTTTGCCAATATGGATGAGCGGTTGCTTGATGCGATCTGTGAGCGTCTGAAACCAAGTTTATGCACAGAGAGTACATTTATAGTCCGGGAAGGGGACCCTGTTGTTGAGATGTTATTCATCATACGTGGTCGCCTAGAAAGTGTAACCACAGATGGTGGTAGGAGTGGATTTTACAACAGTGGTTTGCTCCAGGAAGGTGACTTTTGTGGAGAAGAGCTCCTAACATGGGCACTGGACCCGAAAGCAGGCTCTAACTTACCATCATCTACTCGAACAGTGAAGGCTTTAACTGAGGTTGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCACCTTCATAGCAGACAGGTTCAGTACACCTTCCGGTTTTACTCACAGCAATGGAGGACTTGGGCGGCCTGCTTTATCCAAGCTGCTTGGCGCCACTACAGGAGAAAAGTGGCGGCAGAAAAACAAAGAGAGGAGGAATTTGGATACAGTGATGGAGATGATGATGGTGGTGGTGGTGGCGGTGATTTTAAAAGCGGTTCTGGTAAATATGCGCTTGGTGCTGCAGTCTTTGCATCCCGCTTTGCAGCAAATGCTCTTCGTGGTCATAGGCTTCGCAGTGAAAGCACCAGGGGGCTACTGCTGCAGAAGCCCTCTGAACCTGACTTCTCGGCTTATGATGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

319

Amino Acids

36.91

Weight (kDa)

8.22

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	112 - 198	7.1e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15990 AT1G19780 AT1G19780
fragaria_vesca	FvH4_6g28560 FvH4_6g28560
malus_domestica	MD05G1041200.v1.1
prunus_persica	Prupe.3G099200_v2.0.a1
pyrus_communis	pycom05g03400
rosa_chinensis	RchiOBHm_Chr2g0132901
rosa_laevigata	RLG00000019289
rosa_multiflora	Rmu_sc0001314.1_g000002 Rmu_sc0016946.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111640
rosa_rugosa	Rorug02G0308100
rosa_samantha	Rh2AG360700 Rh2BG366600 Rh2CG343900 Rh2DG383600
rosa_wichuraiana	Rw2G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	253, 612, 702
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	6 cut(s)	280, 677, 725, 792, 807, 850
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	238, 590, 749
AcuI	CTGAAG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	703
AfaI	GTAC	3 cut(s)	12, 334, 638
AfiI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
AgsI	TTSAA	2 cut(s)	238, 589
AjnI	CCWGG	2 cut(s)	450, 899
AluBI	AGCT	2 cut(s)	478, 695
AluI	AGCT	2 cut(s)	478, 695
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	33, 149
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	4 cut(s)	695, 833, 857, 913
ApoI	RAATTY	3 cut(s)	238, 590, 749
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	3 cut(s)	132, 705, 826
AspS9I	GGNCC	2 cut(s)	355, 496
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	470, 806
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	355, 496
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	3 cut(s)	253, 612, 702
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	4 cut(s)	682, 820, 869, 900
BccI	CCATC	5 cut(s)	99, 407, 529, 758, 770
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	452, 901
BciVI	GTATCC	1 cut(s)	749
BclI	TGATCA	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	33, 149
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	3 cut(s)	709, 834, 914
BfoI	RGCGCY	2 cut(s)	133, 706
BfuI	GTATCC	1 cut(s)	749
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	6 cut(s)	678, 696, 726, 834, 858, 914
BlsI	GCNGC	6 cut(s)	679, 697, 727, 835, 859, 915
Bme1390I	CCNGG	3 cut(s)	347, 452, 901
Bme18I	GGWCC	2 cut(s)	355, 496
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	355, 496
BmiI	GGNNCC	6 cut(s)	255, 356, 357, 498, 614, 704
BmrFI	CCNGG	3 cut(s)	347, 452, 901
BmsI	GCATC	4 cut(s)	75, 235, 280, 854
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 487, 506
Bse1I	ACTGG	2 cut(s)	498, 600
Bse3DI	GCAATG	1 cut(s)	668
BseBI	CCWGG	2 cut(s)	452, 901
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	3 cut(s)	90, 280, 845
BseLI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	3 cut(s)	66, 220, 543
BseNI	ACTGG	2 cut(s)	498, 600
BseRI	GAGGAG	4 cut(s)	62, 188, 596, 758
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	4 cut(s)	682, 820, 869, 900
BshFI	GGCC	1 cut(s)	680
BshNI	GGYRCC	3 cut(s)	253, 612, 702
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	346, 646
BslFI	GGGAC	2 cut(s)	227, 368
BslI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
BsmAI	GTCTC	2 cut(s)	33, 149
BsmFI	GGGAC	2 cut(s)	227, 368
BsnI	GGCC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	480, 493
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	109, 136, 202, 294
BspACI	CCGC	6 cut(s)	280, 677, 725, 792, 807, 850
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	3 cut(s)	67, 219, 544
BspLI	GGNNCC	6 cut(s)	255, 356, 357, 498, 614, 704
BspMAI	CTGCAG	2 cut(s)	838, 918
BspPI	GGATC	1 cut(s)	117
BspQI	GCTCTTC	2 cut(s)	468, 873
BspT107I	GGYRCC	3 cut(s)	253, 612, 702
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	668
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	498, 600
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	4 cut(s)	109, 136, 202, 294
BssNI	GRCGYC	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	452, 901
Bst4CI	ACNGT	3 cut(s)	440, 538, 761
Bst6I	CTCTTC	2 cut(s)	468, 873
BstACI	GRCGYC	1 cut(s)	703
BstAPI	GCANNNNNTGC	3 cut(s)	85, 842, 863
BstAUI	TGTACA	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	98, 508, 682
BstDEI	CTNAG	4 cut(s)	75, 113, 206, 552
BstF5I	GGATG	3 cut(s)	90, 280, 845
BstH2I	RGCGCY	2 cut(s)	133, 706
BstHHI	GCGC	3 cut(s)	132, 705, 826
BstKTI	GATC	4 cut(s)	112, 139, 205, 297
BstMAI	GTCTC	2 cut(s)	33, 149
BstMBI	GATC	4 cut(s)	109, 136, 202, 294
BstMWI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
BstNI	CCWGG	2 cut(s)	452, 901
BstSCI	CCNGG	3 cut(s)	345, 450, 899
BstSFI	CTRYAG	3 cut(s)	709, 834, 914
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	4 cut(s)	682, 820, 869, 900
BstX2I	RGATCY	2 cut(s)	109, 202
BstYI	RGATCY	2 cut(s)	109, 202
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	90, 280, 845
BtsI	GCAGTG	2 cut(s)	86, 895
BtsIMutI	CAGTG	6 cut(s)	86, 445, 491, 543, 766, 895
Cac8I	GCNNGC	3 cut(s)	98, 508, 682
CfoI	GCGC	3 cut(s)	132, 705, 826
Cfr13I	GGNCC	2 cut(s)	355, 496
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	11, 333, 637
CviAII	CATG	1 cut(s)	486
CviQI	GTAC	3 cut(s)	11, 333, 637
DdeI	CTNAG	4 cut(s)	75, 113, 206, 552
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	4 cut(s)	111, 138, 204, 296
DpnII	GATC	4 cut(s)	109, 136, 202, 294
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	468, 873
EarI	CTCTTC	2 cut(s)	468, 873
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	355, 496
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	450, 899
EcoT38I	GRGCYC	1 cut(s)	480
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
FaeI	CATG	1 cut(s)	489
FaqI	GGGAC	2 cut(s)	227, 368
FatI	CATG	1 cut(s)	485
FauI	CCCGC	1 cut(s)	857
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	6 cut(s)	678, 696, 726, 834, 858, 914
FokI	GGATG	3 cut(s)	97, 287, 832
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	6 cut(s)	678, 696, 726, 834, 858, 914
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	3 cut(s)	131, 704, 825
GluI	GCNGC	6 cut(s)	678, 696, 726, 834, 858, 914
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	2 cut(s)	133, 706
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	2 cut(s)	346, 646
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	3 cut(s)	132, 705, 826
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	1 cut(s)	489
Hin6I	GCGC	3 cut(s)	130, 703, 824
HinP1I	GCGC	3 cut(s)	130, 703, 824
HinfI	GANTC	3 cut(s)	71, 157, 190
HpaII	CCGG	2 cut(s)	346, 646
HphI	GGTGA	2 cut(s)	470, 806
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	76, 248, 309, 928
Hpy188III	TCNNGA	3 cut(s)	44, 187, 208
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	6 cut(s)	243, 344, 449, 535, 626, 652
HpyCH4III	ACNGT	3 cut(s)	440, 538, 761
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	88, 324, 836, 845, 857, 916
HpyF10VI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
HpyF3I	CTNAG	4 cut(s)	75, 113, 206, 552
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	1 cut(s)	489
HspAI	GCGC	3 cut(s)	130, 703, 824
KasI	GGCGCC	1 cut(s)	702
KflI	GGGWCCC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	109, 136, 202, 294
LguI	GCTCTTC	2 cut(s)	468, 873
LmnI	GCTCC	2 cut(s)	453, 483
Lsp1109I	GCAGC	4 cut(s)	682, 820, 869, 900
LweI	GCATC	4 cut(s)	75, 235, 280, 854
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	68, 403, 458
MalI	GATC	4 cut(s)	111, 138, 204, 296
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	4 cut(s)	109, 136, 202, 294
MboII	GAAGA	3 cut(s)	14, 485, 860
MflI	RGATCY	2 cut(s)	109, 202
MhlI	GDGCHC	2 cut(s)	480, 493
MluCI	AATT	4 cut(s)	36, 238, 590, 749
Mly113I	GGCGCC	1 cut(s)	703
MlyI	GAGTC	3 cut(s)	65, 151, 184
MmeI	TCCRAC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	4 cut(s)	60, 219, 548, 801
MslI	CAYNNNNRTG	1 cut(s)	661
MspI	CCGG	2 cut(s)	346, 646
MspR9I	CCNGG	3 cut(s)	347, 452, 901
MvaI	CCWGG	2 cut(s)	452, 901
MwoI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
NarI	GGCGCC	1 cut(s)	703
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	4 cut(s)	109, 136, 202, 294
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	6 cut(s)	255, 356, 357, 498, 614, 704
NmeAIII	GCCGAG	1 cut(s)	920
NmuCI	GTSAC	2 cut(s)	68, 458
PaeR7I	CTCGAG	1 cut(s)	159
PciSI	GCTCTTC	2 cut(s)	468, 873
PdmI	GAANNNNTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	345, 450
PkrI	GCNGC	6 cut(s)	679, 697, 727, 835, 859, 915
PleI	GAGTC	3 cut(s)	65, 151, 184
PluTI	GGCGCC	1 cut(s)	706
PpsI	GAGTC	3 cut(s)	65, 151, 184
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	450, 899
PspGI	CCWGG	2 cut(s)	450, 899
PspN4I	GGNNCC	6 cut(s)	255, 356, 357, 498, 614, 704
PspPI	GGNCC	2 cut(s)	355, 496
PspPPI	RGGWCCY	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	159
PstI	CTGCAG	2 cut(s)	838, 918
PsuI	RGATCY	2 cut(s)	109, 202
RsaI	GTAC	3 cut(s)	12, 334, 638
RsaNI	GTAC	3 cut(s)	11, 333, 637
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	2 cut(s)	468, 873
SaqAI	TTAA	4 cut(s)	60, 219, 548, 801
SatI	GCNGC	6 cut(s)	678, 696, 726, 834, 858, 914
Sau3AI	GATC	4 cut(s)	109, 136, 202, 294
Sau96I	GGNCC	2 cut(s)	355, 496
SchI	GAGTC	3 cut(s)	65, 151, 184
ScrFI	CCNGG	3 cut(s)	347, 452, 901
SduI	GDGCHC	2 cut(s)	480, 493
SfaNI	GCATC	4 cut(s)	75, 235, 280, 854
SfcI	CTRYAG	3 cut(s)	709, 834, 914
SfoI	GGCGCC	1 cut(s)	704
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	355, 496
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	44, 159
SmoI	CTYRAG	2 cut(s)	44, 159
Sse9I	AATT	4 cut(s)	36, 238, 590, 749
SsiI	CCGC	6 cut(s)	280, 677, 725, 792, 807, 850
SspDI	GGCGCC	1 cut(s)	702
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	345, 450, 899
TaaI	ACNGT	3 cut(s)	440, 538, 761
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	160, 532
TasI	AATT	4 cut(s)	36, 238, 590, 749
TatI	WGTACW	3 cut(s)	10, 332, 636
TauI	GCSGC	2 cut(s)	680, 728
Tru1I	TTAA	4 cut(s)	60, 219, 548, 801
Tru9I	TTAA	4 cut(s)	60, 219, 548, 801
TscAI	CASTG	6 cut(s)	86, 445, 498, 543, 766, 895
TseFI	GTSAC	2 cut(s)	68, 458
TseI	GCWGC	4 cut(s)	695, 833, 857, 913
Tsp45I	GTSAC	2 cut(s)	68, 458
TspDTI	ATGAA	3 cut(s)	17, 367, 608
TspRI	CASTG	6 cut(s)	86, 445, 498, 543, 766, 895
VpaK11BI	GGWCC	2 cut(s)	355, 496
XapI	RAATTY	3 cut(s)	238, 590, 749
XhoI	CTCGAG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.