Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011651

Physical Location & Seq

Genomic Coordinates Reverse (-)

36274203 .. 36279468

Gene Structure 5266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGGATTAAAAGGCGTGACTCTGAGCAGTGGATGCACCATCGCTGGCTTCCACAGGATCTTAGAGAAAGGGTTCGGCGCTACGATCAATATAAATGGTTGGAGACTCGAGGTGTAGATGAGGAGAGCATTGTCCAGACTCTCCCAAAAGATCTCAGGAGGGACATTAAACGGCATCTCTGCTTGAATTTGGTCAGAAGGGTCCCTCTTTTCGCCAATATGGATGAGCGGTTGCTTGATGCGATCTGTGAGCGTCTGAAACCAAGTTTATGCACAGAGAGTACTTTTATAGTCCGGGAAGGGGACCCTGTTGTTGAGATGTTATTCATCATACGTGGTCGCCTAGAAAGTGTGACCACAGATGGTGGTAGGAGTGGATTTTACAACAGTGGTTTGCTCCAGGAAGGTGACTTTTGTGGAGAAGAGCTCCTAACATGGGCACTGGACCCGAAAGCAGGCTCTAACTTACCATCATCTACTCGAACAGTGAAGGCTTTAACTGAGGTTGAGGCATTTGCTTTGGAAGCAGAGGAGTTGAAATTTGTTGCCAGTCAGTTTAGGCACCTTCATAGCAGACAGGTTCAGTACACCTTCCGGTTCTACTCACAGCAATGGAGGACTTGGGCAGCCTGCTTTATCCAAGCTGCTTGGCGCCACTACAGGAGAAAAGTGGCGGCAGAAAAACAAAGAGAGGAGGAATTTGGATACAGTGATGGAGATGATGGTGGTGGTGGTGGTGGTGGCGGTGATTTTAAAAGCGGTTCTGGTAGATATGCGCTTGGTGCCGCAGTCTTTGCATCTCGCTTTGCAGCAAATGCTCTTCGTGGTCATAGGCTTCGCAGTGCAAGCACCAGGGAGCTACTGCTGCAGAAGCCCCTGAACCTGACTTCTCGGCTTATGATGATAAATAATCCAAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

307

Amino Acids

35.36

Weight (kDa)

9.33

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	95 - 181	6.6e-07	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15990 AT1G19780 AT1G19780
fragaria_vesca	FvH4_6g28560 FvH4_6g28560
malus_domestica	MD05G1041200.v1.1
prunus_persica	Prupe.3G099200_v2.0.a1
pyrus_communis	pycom05g03400
rosa_chinensis	RchiOBHm_Chr2g0132901
rosa_laevigata	RLG00000019289
rosa_multiflora	Rmu_sc0001314.1_g000002 Rmu_sc0016946.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111640
rosa_rugosa	Rorug02G0308100
rosa_samantha	Rh2AG360700 Rh2BG366600 Rh2CG343900 Rh2DG383600
rosa_wichuraiana	Rw2G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	561, 651, 782
AccBSI	CCGCTC	1 cut(s)	229
AciI	CCGC	5 cut(s)	229, 674, 744, 759, 786
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	187, 539, 698
AcyI	GRCGYC	1 cut(s)	652
AfaI	GTAC	2 cut(s)	283, 587
AfiI	CCNNNNNNNGG	3 cut(s)	301, 436, 455
AgsI	TTSAA	2 cut(s)	187, 538
AjnI	CCWGG	2 cut(s)	399, 851
AluBI	AGCT	3 cut(s)	427, 644, 859
AluI	AGCT	3 cut(s)	427, 644, 859
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	4 cut(s)	626, 644, 809, 865
ApoI	RAATTY	3 cut(s)	187, 539, 698
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	3 cut(s)	81, 654, 778
AspS9I	GGNCC	3 cut(s)	202, 304, 445
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	419, 758
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	202, 304, 445
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	3 cut(s)	561, 651, 782
BanII	GRGCYC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	631, 638, 821, 852
BccI	CCATC	5 cut(s)	48, 356, 478, 707, 716
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	401, 853
BciVI	GTATCC	1 cut(s)	698
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	2 cut(s)	658, 866
BfoI	RGCGCY	2 cut(s)	82, 655
BfuI	GTATCC	1 cut(s)	698
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	6 cut(s)	627, 645, 675, 786, 810, 866
BlsI	GCNGC	6 cut(s)	628, 646, 676, 787, 811, 867
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	3 cut(s)	296, 401, 853
Bme18I	GGWCC	3 cut(s)	202, 304, 445
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	3 cut(s)	202, 304, 445
BmiI	GGNNCC	8 cut(s)	203, 204, 305, 306, 447, 563, 653, 784
BmrFI	CCNGG	3 cut(s)	296, 401, 853
BmsI	GCATC	4 cut(s)	24, 184, 229, 806
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpmI	CTGGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	852
BsaWI	WCCGGW	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 436, 455
Bse1I	ACTGG	2 cut(s)	447, 549
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	2 cut(s)	401, 853
BseDI	CCNNGG	1 cut(s)	852
BseGI	GGATG	2 cut(s)	39, 229
BseLI	CCNNNNNNNGG	3 cut(s)	301, 436, 455
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	3 cut(s)	15, 169, 492
BseNI	ACTGG	2 cut(s)	447, 549
BseRI	GAGGAG	3 cut(s)	137, 545, 707
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	4 cut(s)	631, 638, 821, 852
BshNI	GGYRCC	3 cut(s)	561, 651, 782
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	295, 595
BslFI	GGGAC	3 cut(s)	176, 188, 317
BslI	CCNNNNNNNGG	3 cut(s)	301, 436, 455
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	3 cut(s)	176, 188, 317
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	429, 442
Bsp143I	GATC	4 cut(s)	58, 85, 151, 243
BspACI	CCGC	5 cut(s)	229, 674, 744, 759, 786
BspCNI	CTCAG	3 cut(s)	16, 168, 493
BspLI	GGNNCC	8 cut(s)	203, 204, 305, 306, 447, 563, 653, 784
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	1 cut(s)	66
BspQI	GCTCTTC	2 cut(s)	417, 825
BspT107I	GGYRCC	3 cut(s)	561, 651, 782
BsrBI	CCGCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	447, 549
BssECI	CCNNGG	1 cut(s)	852
BssMI	GATC	4 cut(s)	58, 85, 151, 243
BssNI	GRCGYC	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	401, 853
Bst4CI	ACNGT	3 cut(s)	389, 487, 710
Bst6I	CTCTTC	2 cut(s)	417, 825
BstACI	GRCGYC	1 cut(s)	652
BstAPI	GCANNNNNTGC	3 cut(s)	34, 794, 815
BstBAI	YACGTR	1 cut(s)	335
BstC8I	GCNNGC	4 cut(s)	47, 457, 631, 847
BstDEI	CTNAG	4 cut(s)	24, 62, 155, 501
BstF5I	GGATG	2 cut(s)	39, 229
BstH2I	RGCGCY	2 cut(s)	82, 655
BstHHI	GCGC	3 cut(s)	81, 654, 778
BstKTI	GATC	4 cut(s)	61, 88, 154, 246
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	4 cut(s)	58, 85, 151, 243
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 524, 782, 794, 815, 846, 865, 871
BstNI	CCWGG	2 cut(s)	401, 853
BstSCI	CCNGG	3 cut(s)	294, 399, 851
BstSFI	CTRYAG	2 cut(s)	658, 866
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	631, 638, 821, 852
BstX2I	RGATCY	2 cut(s)	58, 151
BstYI	RGATCY	2 cut(s)	58, 151
BsuI	GTATCC	1 cut(s)	698
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	39, 229
BtsI	GCAGTG	2 cut(s)	35, 847
BtsIMutI	CAGTG	6 cut(s)	35, 394, 440, 492, 715, 847
Cac8I	GCNNGC	4 cut(s)	47, 457, 631, 847
CfoI	GCGC	3 cut(s)	81, 654, 778
Cfr13I	GGNCC	3 cut(s)	202, 304, 445
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	282, 586
CviAII	CATG	1 cut(s)	435
CviQI	GTAC	2 cut(s)	282, 586
DdeI	CTNAG	4 cut(s)	24, 62, 155, 501
DinI	GGCGCC	1 cut(s)	653
DpnI	GATC	4 cut(s)	60, 87, 153, 245
DpnII	GATC	4 cut(s)	58, 85, 151, 243
DraI	TTTAAA	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	417, 825
EarI	CTCTTC	2 cut(s)	417, 825
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	3 cut(s)	202, 304, 445
Eco53kI	GAGCTC	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	202, 304
EcoRII	CCWGG	2 cut(s)	399, 851
EcoT38I	GRGCYC	1 cut(s)	429
EgeI	GGCGCC	1 cut(s)	653
EheI	GGCGCC	1 cut(s)	653
FaeI	CATG	1 cut(s)	438
FaqI	GGGAC	3 cut(s)	176, 188, 317
FatI	CATG	1 cut(s)	434
Fnu4HI	GCNGC	6 cut(s)	627, 645, 675, 786, 810, 866
FokI	GGATG	2 cut(s)	46, 236
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	6 cut(s)	627, 645, 675, 786, 810, 866
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	3 cut(s)	80, 653, 777
GluI	GCNGC	6 cut(s)	627, 645, 675, 786, 810, 866
GsuI	CTGGAG	1 cut(s)	383
HaeII	RGCGCY	2 cut(s)	82, 655
HapII	CCGG	2 cut(s)	295, 595
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	81, 654, 778
Hin1I	GRCGYC	1 cut(s)	652
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	3 cut(s)	79, 652, 776
HinP1I	GCGC	3 cut(s)	79, 652, 776
HinfI	GANTC	3 cut(s)	20, 106, 139
HpaII	CCGG	2 cut(s)	295, 595
HphI	GGTGA	2 cut(s)	419, 758
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	3 cut(s)	25, 197, 258
Hpy188III	TCNNGA	2 cut(s)	136, 157
Hpy8I	GTNNAC	1 cut(s)	588
HpyAV	CCTTC	6 cut(s)	192, 293, 398, 484, 575, 601
HpyCH4III	ACNGT	3 cut(s)	389, 487, 710
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	37, 273, 797, 809, 845, 868
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 524, 782, 794, 815, 846, 865, 871
HpyF3I	CTNAG	4 cut(s)	24, 62, 155, 501
HpySE526I	ACGT	1 cut(s)	334
Hsp92I	GRCGYC	1 cut(s)	652
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	3 cut(s)	79, 652, 776
KasI	GGCGCC	1 cut(s)	651
KflI	GGGWCCC	2 cut(s)	202, 304
Kzo9I	GATC	4 cut(s)	58, 85, 151, 243
LguI	GCTCTTC	2 cut(s)	417, 825
LmnI	GCTCC	3 cut(s)	402, 432, 856
Lsp1109I	GCAGC	4 cut(s)	631, 638, 821, 852
LweI	GCATC	4 cut(s)	24, 184, 229, 806
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	3 cut(s)	17, 352, 407
MalI	GATC	4 cut(s)	60, 87, 153, 245
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	4 cut(s)	58, 85, 151, 243
MboII	GAAGA	2 cut(s)	434, 812
MflI	RGATCY	2 cut(s)	58, 151
MhlI	GDGCHC	2 cut(s)	429, 442
MluCI	AATT	3 cut(s)	187, 539, 698
Mly113I	GGCGCC	1 cut(s)	652
MlyI	GAGTC	3 cut(s)	14, 100, 133
MmeI	TCCRAC	1 cut(s)	81
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	5 cut(s)	9, 168, 497, 753, 922
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	2 cut(s)	295, 595
MspR9I	CCNGG	3 cut(s)	296, 401, 853
MvaI	CCWGG	2 cut(s)	401, 853
MwoI	GCNNNNNNNGC	8 cut(s)	34, 524, 782, 794, 815, 846, 865, 871
NarI	GGCGCC	1 cut(s)	652
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	58, 85, 151, 243
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	8 cut(s)	203, 204, 305, 306, 447, 563, 653, 784
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	3 cut(s)	17, 352, 407
PaeR7I	CTCGAG	1 cut(s)	108
PciSI	GCTCTTC	2 cut(s)	417, 825
PdmI	GAANNNNTTC	1 cut(s)	72
PfoI	TCCNGGA	2 cut(s)	294, 399
PkrI	GCNGC	6 cut(s)	628, 646, 676, 787, 811, 867
PleI	GAGTC	3 cut(s)	14, 100, 133
PluTI	GGCGCC	1 cut(s)	655
PpsI	GAGTC	3 cut(s)	14, 100, 133
Ppu21I	YACGTR	1 cut(s)	335
PpuMI	RGGWCCY	2 cut(s)	202, 304
Psp124BI	GAGCTC	1 cut(s)	429
Psp5II	RGGWCCY	2 cut(s)	202, 304
Psp6I	CCWGG	2 cut(s)	399, 851
PspGI	CCWGG	2 cut(s)	399, 851
PspN4I	GGNNCC	8 cut(s)	203, 204, 305, 306, 447, 563, 653, 784
PspPI	GGNCC	3 cut(s)	202, 304, 445
PspPPI	RGGWCCY	2 cut(s)	202, 304
PspXI	VCTCGAGB	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	2 cut(s)	58, 151
RsaI	GTAC	2 cut(s)	283, 587
RsaNI	GTAC	2 cut(s)	282, 586
RseI	CAYNNNNRTG	1 cut(s)	610
SacI	GAGCTC	1 cut(s)	429
SapI	GCTCTTC	2 cut(s)	417, 825
SaqAI	TTAA	5 cut(s)	9, 168, 497, 753, 922
SatI	GCNGC	6 cut(s)	627, 645, 675, 786, 810, 866
Sau3AI	GATC	4 cut(s)	58, 85, 151, 243
Sau96I	GGNCC	3 cut(s)	202, 304, 445
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	3 cut(s)	14, 100, 133
ScrFI	CCNGG	3 cut(s)	296, 401, 853
SduI	GDGCHC	2 cut(s)	429, 442
SfaNI	GCATC	4 cut(s)	24, 184, 229, 806
SfcI	CTRYAG	2 cut(s)	658, 866
SfoI	GGCGCC	1 cut(s)	653
Sfr274I	CTCGAG	1 cut(s)	108
SinI	GGWCC	3 cut(s)	202, 304, 445
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	187, 539, 698
SsiI	CCGC	5 cut(s)	229, 674, 744, 759, 786
SspDI	GGCGCC	1 cut(s)	651
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	3 cut(s)	294, 399, 851
TaaI	ACNGT	3 cut(s)	389, 487, 710
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	109, 481
TasI	AATT	3 cut(s)	187, 539, 698
TatI	WGTACW	2 cut(s)	281, 585
TauI	GCSGC	2 cut(s)	677, 788
Tru1I	TTAA	5 cut(s)	9, 168, 497, 753, 922
Tru9I	TTAA	5 cut(s)	9, 168, 497, 753, 922
TscAI	CASTG	6 cut(s)	35, 394, 447, 492, 715, 847
TseFI	GTSAC	3 cut(s)	17, 352, 407
TseI	GCWGC	4 cut(s)	626, 644, 809, 865
Tsp45I	GTSAC	3 cut(s)	17, 352, 407
TspDTI	ATGAA	2 cut(s)	316, 557
TspRI	CASTG	6 cut(s)	35, 394, 447, 492, 715, 847
VpaK11BI	GGWCC	3 cut(s)	202, 304, 445
XapI	RAATTY	3 cut(s)	187, 539, 698
XhoI	CTCGAG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	1 cut(s)	344
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.