Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016946.1

Orthogroup ID

OG0011651

Physical Location & Seq

Genomic Coordinates Reverse (-)

19639 .. 20897

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016946.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgaacattgtacagacctatcttcagtctctcacaattcgtcttgaggagatgaggattaaaaggcgtgactctgagcagtggatgcaccatcgctggcttccacaggatcttagagaaagggttcggcgctacgatcaatataaatggttggagactcgaggtgtagatgaggagagcattgtccagactctcccaaaagatctcaggagggacattaaacggcatctctgcttgaatttggtcagaagggtgcctcttttcgccaatatggatgagcggttgcttgatgcgatctgtgagcgtctgaaaccaagtttatgcacagagagtacatttatagtccgggaaggggaccctgttgttgagatgttattcatcatacgtggtcgcctagaaagtgtaaccacagatggtggtaggagtggattttacaacagtggtttgctccaggaaggtgacttttgtggagaagagctcctaacatgggcactggacccgaaagcaggctctaacttaccatcatctactcgaacagtgaaggctttaactgaggttgaggcatttgctttggaagcagaggagttgaaatttgttgccagtcagtttaggcaccttcatagcagacaggttcagtacaccttccggttttactcacagcaatggaggacttgggcggcctgctttatccaagctgcttggcgccactacaggagaaaagtggcggcagaaaaacaaagagaggaggaatttggatacagtgatggagatgatgatggtggtggtggcggcggtgattttaaaagcggttctggtaaatatgcgcttggtgccgcagtctttgcatcccgctttgcagcaaatgctcttcgtggtcataggcttcgcagtgaaagcaccagggggctactgctgcagaagccctctgaacctgacttctcggcttatgatgataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0022414 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0046873 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

319

Amino Acids

36.91

Weight (kDa)

8.22

Isoelectric Point (pI)

64.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15990 AT1G19780 AT1G19780
fragaria_vesca	FvH4_6g28560 FvH4_6g28560
malus_domestica	MD05G1041200.v1.1
prunus_persica	Prupe.3G099200_v2.0.a1
pyrus_communis	pycom05g03400
rosa_chinensis	RchiOBHm_Chr2g0132901
rosa_laevigata	RLG00000019289
rosa_multiflora	Rmu_sc0001314.1_g000002 Rmu_sc0016946.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111640
rosa_rugosa	Rorug02G0308100
rosa_samantha	Rh2AG360700 Rh2BG366600 Rh2CG343900 Rh2DG383600
rosa_wichuraiana	Rw2G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	253, 612, 702, 830
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	8 cut(s)	280, 677, 725, 789, 792, 807, 834, 850
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	238, 590, 749
AcuI	CTGAAG	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	703
AfaI	GTAC	3 cut(s)	12, 334, 638
AfiI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
AgsI	TTSAA	2 cut(s)	238, 589
AjnI	CCWGG	2 cut(s)	450, 899
AluBI	AGCT	2 cut(s)	478, 695
AluI	AGCT	2 cut(s)	478, 695
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	33, 149
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	678
ApeKI	GCWGC	3 cut(s)	695, 857, 913
ApoI	RAATTY	3 cut(s)	238, 590, 749
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	3 cut(s)	132, 705, 826
AspS9I	GGNCC	2 cut(s)	355, 496
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	470, 806
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	355, 496
BaeGI	GKGCMC	1 cut(s)	493
BanI	GGYRCC	4 cut(s)	253, 612, 702, 830
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	682, 869, 900
BccI	CCATC	5 cut(s)	99, 407, 529, 758, 770
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	452, 901
BciVI	GTATCC	1 cut(s)	749
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	33, 149
BfaI	CTAG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	709, 914
BfoI	RGCGCY	2 cut(s)	133, 706
BfuI	GTATCC	1 cut(s)	749
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	7 cut(s)	678, 696, 726, 790, 834, 858, 914
BlsI	GCNGC	7 cut(s)	679, 697, 727, 791, 835, 859, 915
Bme1390I	CCNGG	3 cut(s)	347, 452, 901
Bme18I	GGWCC	2 cut(s)	355, 496
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	355, 496
BmiI	GGNNCC	7 cut(s)	255, 356, 357, 498, 614, 704, 832
BmrFI	CCNGG	3 cut(s)	347, 452, 901
BmsI	GCATC	4 cut(s)	75, 235, 280, 854
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	703
BsaJI	CCNNGG	1 cut(s)	900
BsaWI	WCCGGW	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 487, 506
Bse1I	ACTGG	2 cut(s)	498, 600
Bse3DI	GCAATG	1 cut(s)	668
BseBI	CCWGG	2 cut(s)	452, 901
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	3 cut(s)	90, 280, 845
BseLI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	3 cut(s)	66, 220, 543
BseNI	ACTGG	2 cut(s)	498, 600
BseRI	GAGGAG	4 cut(s)	62, 188, 596, 758
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	682, 869, 900
BshFI	GGCC	1 cut(s)	680
BshNI	GGYRCC	4 cut(s)	253, 612, 702, 830
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	346, 646
BslFI	GGGAC	2 cut(s)	227, 368
BslI	CCNNNNNNNGG	3 cut(s)	352, 487, 506
BsmAI	GTCTC	2 cut(s)	33, 149
BsmFI	GGGAC	2 cut(s)	227, 368
BsnI	GGCC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	480, 493
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	109, 136, 202, 294
BspACI	CCGC	8 cut(s)	280, 677, 725, 789, 792, 807, 834, 850
BspANI	GGCC	1 cut(s)	680
BspCNI	CTCAG	3 cut(s)	67, 219, 544
BspLI	GGNNCC	7 cut(s)	255, 356, 357, 498, 614, 704, 832
BspMAI	CTGCAG	1 cut(s)	918
BspPI	GGATC	1 cut(s)	117
BspQI	GCTCTTC	2 cut(s)	468, 873
BspT107I	GGYRCC	4 cut(s)	253, 612, 702, 830
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	668
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	498, 600
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	4 cut(s)	109, 136, 202, 294
BssNI	GRCGYC	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	452, 901
Bst4CI	ACNGT	3 cut(s)	440, 538, 761
Bst6I	CTCTTC	2 cut(s)	468, 873
BstACI	GRCGYC	1 cut(s)	703
BstAPI	GCANNNNNTGC	3 cut(s)	85, 842, 863
BstAUI	TGTACA	1 cut(s)	10
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	98, 508, 682
BstDEI	CTNAG	4 cut(s)	75, 113, 206, 552
BstF5I	GGATG	3 cut(s)	90, 280, 845
BstH2I	RGCGCY	2 cut(s)	133, 706
BstHHI	GCGC	3 cut(s)	132, 705, 826
BstKTI	GATC	4 cut(s)	112, 139, 205, 297
BstMAI	GTCTC	2 cut(s)	33, 149
BstMBI	GATC	4 cut(s)	109, 136, 202, 294
BstMWI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
BstNI	CCWGG	2 cut(s)	452, 901
BstSCI	CCNGG	3 cut(s)	345, 450, 899
BstSFI	CTRYAG	2 cut(s)	709, 914
BstSLI	GKGCMC	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	682, 869, 900
BstX2I	RGATCY	2 cut(s)	109, 202
BstYI	RGATCY	2 cut(s)	109, 202
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	680
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	90, 280, 845
BtsI	GCAGTG	2 cut(s)	86, 895
BtsIMutI	CAGTG	6 cut(s)	86, 445, 491, 543, 766, 895
Cac8I	GCNNGC	3 cut(s)	98, 508, 682
CfoI	GCGC	3 cut(s)	132, 705, 826
Cfr13I	GGNCC	2 cut(s)	355, 496
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	3 cut(s)	11, 333, 637
CviAII	CATG	1 cut(s)	486
CviQI	GTAC	3 cut(s)	11, 333, 637
DdeI	CTNAG	4 cut(s)	75, 113, 206, 552
DinI	GGCGCC	1 cut(s)	704
DpnI	GATC	4 cut(s)	111, 138, 204, 296
DpnII	GATC	4 cut(s)	109, 136, 202, 294
DraI	TTTAAA	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	468, 873
EarI	CTCTTC	2 cut(s)	468, 873
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	480
Eco47I	GGWCC	2 cut(s)	355, 496
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	2 cut(s)	450, 899
EcoT38I	GRGCYC	1 cut(s)	480
EgeI	GGCGCC	1 cut(s)	704
EheI	GGCGCC	1 cut(s)	704
FaeI	CATG	1 cut(s)	489
FaqI	GGGAC	2 cut(s)	227, 368
FatI	CATG	1 cut(s)	485
FauI	CCCGC	1 cut(s)	857
Fnu4HI	GCNGC	7 cut(s)	678, 696, 726, 790, 834, 858, 914
FokI	GGATG	3 cut(s)	97, 287, 832
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	7 cut(s)	678, 696, 726, 790, 834, 858, 914
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	3 cut(s)	131, 704, 825
GluI	GCNGC	7 cut(s)	678, 696, 726, 790, 834, 858, 914
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	2 cut(s)	133, 706
HaeIII	GGCC	1 cut(s)	680
HapII	CCGG	2 cut(s)	346, 646
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	3 cut(s)	132, 705, 826
Hin1I	GRCGYC	1 cut(s)	703
Hin1II	CATG	1 cut(s)	489
Hin6I	GCGC	3 cut(s)	130, 703, 824
HinP1I	GCGC	3 cut(s)	130, 703, 824
HinfI	GANTC	3 cut(s)	71, 157, 190
HpaII	CCGG	2 cut(s)	346, 646
HphI	GGTGA	2 cut(s)	470, 806
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	76, 248, 309, 928
Hpy188III	TCNNGA	3 cut(s)	44, 187, 208
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	6 cut(s)	243, 344, 449, 535, 626, 652
HpyCH4III	ACNGT	3 cut(s)	440, 538, 761
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	5 cut(s)	88, 324, 845, 857, 916
HpyF10VI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
HpyF3I	CTNAG	4 cut(s)	75, 113, 206, 552
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	703
Hsp92II	CATG	1 cut(s)	489
HspAI	GCGC	3 cut(s)	130, 703, 824
KasI	GGCGCC	1 cut(s)	702
KflI	GGGWCCC	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	109, 136, 202, 294
LguI	GCTCTTC	2 cut(s)	468, 873
LmnI	GCTCC	2 cut(s)	453, 483
Lsp1109I	GCAGC	3 cut(s)	682, 869, 900
LweI	GCATC	4 cut(s)	75, 235, 280, 854
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	3 cut(s)	68, 403, 458
MalI	GATC	4 cut(s)	111, 138, 204, 296
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	4 cut(s)	109, 136, 202, 294
MboII	GAAGA	3 cut(s)	14, 485, 860
MflI	RGATCY	2 cut(s)	109, 202
MhlI	GDGCHC	2 cut(s)	480, 493
MluCI	AATT	4 cut(s)	36, 238, 590, 749
Mly113I	GGCGCC	1 cut(s)	703
MlyI	GAGTC	3 cut(s)	65, 151, 184
MmeI	TCCRAC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	4 cut(s)	60, 219, 548, 801
MslI	CAYNNNNRTG	1 cut(s)	661
MspI	CCGG	2 cut(s)	346, 646
MspR9I	CCNGG	3 cut(s)	347, 452, 901
MvaI	CCWGG	2 cut(s)	452, 901
MwoI	GCNNNNNNNGC	8 cut(s)	85, 575, 830, 842, 863, 894, 913, 919
NarI	GGCGCC	1 cut(s)	703
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	4 cut(s)	109, 136, 202, 294
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	7 cut(s)	255, 356, 357, 498, 614, 704, 832
NmeAIII	GCCGAG	1 cut(s)	920
NmuCI	GTSAC	2 cut(s)	68, 458
PaeR7I	CTCGAG	1 cut(s)	159
PciSI	GCTCTTC	2 cut(s)	468, 873
PdmI	GAANNNNTTC	1 cut(s)	123
PfoI	TCCNGGA	2 cut(s)	345, 450
PkrI	GCNGC	7 cut(s)	679, 697, 727, 791, 835, 859, 915
PleI	GAGTC	3 cut(s)	65, 151, 184
PluTI	GGCGCC	1 cut(s)	706
PpsI	GAGTC	3 cut(s)	65, 151, 184
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	450, 899
PspGI	CCWGG	2 cut(s)	450, 899
PspN4I	GGNNCC	7 cut(s)	255, 356, 357, 498, 614, 704, 832
PspPI	GGNCC	2 cut(s)	355, 496
PspPPI	RGGWCCY	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	918
PsuI	RGATCY	2 cut(s)	109, 202
RsaI	GTAC	3 cut(s)	12, 334, 638
RsaNI	GTAC	3 cut(s)	11, 333, 637
RseI	CAYNNNNRTG	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	2 cut(s)	468, 873
SaqAI	TTAA	4 cut(s)	60, 219, 548, 801
SatI	GCNGC	7 cut(s)	678, 696, 726, 790, 834, 858, 914
Sau3AI	GATC	4 cut(s)	109, 136, 202, 294
Sau96I	GGNCC	2 cut(s)	355, 496
SchI	GAGTC	3 cut(s)	65, 151, 184
ScrFI	CCNGG	3 cut(s)	347, 452, 901
SduI	GDGCHC	2 cut(s)	480, 493
SfaNI	GCATC	4 cut(s)	75, 235, 280, 854
SfcI	CTRYAG	2 cut(s)	709, 914
SfoI	GGCGCC	1 cut(s)	704
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	355, 496
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	44, 159
SmoI	CTYRAG	2 cut(s)	44, 159
Sse9I	AATT	4 cut(s)	36, 238, 590, 749
SsiI	CCGC	8 cut(s)	280, 677, 725, 789, 792, 807, 834, 850
SspDI	GGCGCC	1 cut(s)	702
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	345, 450, 899
TaaI	ACNGT	3 cut(s)	440, 538, 761
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	2 cut(s)	160, 532
TasI	AATT	4 cut(s)	36, 238, 590, 749
TatI	WGTACW	3 cut(s)	10, 332, 636
TauI	GCSGC	4 cut(s)	680, 728, 792, 836
Tru1I	TTAA	4 cut(s)	60, 219, 548, 801
Tru9I	TTAA	4 cut(s)	60, 219, 548, 801
TscAI	CASTG	6 cut(s)	86, 445, 498, 543, 766, 895
TseFI	GTSAC	2 cut(s)	68, 458
TseI	GCWGC	3 cut(s)	695, 857, 913
Tsp45I	GTSAC	2 cut(s)	68, 458
TspDTI	ATGAA	3 cut(s)	17, 367, 608
TspRI	CASTG	6 cut(s)	86, 445, 498, 543, 766, 895
VpaK11BI	GGWCC	2 cut(s)	355, 496
XapI	RAATTY	3 cut(s)	238, 590, 749
XhoI	CTCGAG	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.