Rmu_sc0001385.1_g000014

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001385.1
OG0012547
Physical Location & Seq
Reverse (-)
75160 .. 78135
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1125 bp
atgcttcagaaaaaagaagcagcagcgatgaaggggatggtgccatctcagccctccatgaaatacccagatgaagatgatgaacatgaagtgaaagaaggaaatgcggggttgccagtagaaggtggttttgcaattgaggacatttctgaaaagtttcagtctcagtgcatcagcctttacaagcgagacctctcaaaacgaggtgaagagctcacttttgagaagaatggtgggtggaggcaagagcagaagggcagaactgcaaggctggagaaacagctcaggttgaggtgggatcttgaggagataattgaagaacaagtgaacaggttccatgcacactacaacttggatatggtcccaacccgcctcaaagacatttcccaactcctcatgcccaattggactccgcctgatgagcttgcctccataggttggtttggtgattggcggccctctgccattctggaacttgtgcgttgcttgtctgcttcctgctttccaatctctgctagcacagaccacctcttactgcagctcattcatgagattcggatcgaagaggcaatacttgatgaggagatggctgagattcagtctacatgtatcctctaccttccgtttgctccaatcaacattcaatcaggtggatctgccttggcttgtgttcactctgagttcaagaagattgaaagggttatcacaaaagctcagcaactcaggttcaaggcactggaattggttttgaagaagatattgaatgaaattgatgcagcagagttcttagtggcatttgagggaatacaagatgctattcaccagtttgcagcaaaccagaggttccagaagggtccagttgctatgcctgtcaaggctttgggatcgttctatccctctcgaatcaggggtgacggaggcagtggtgcagcgatgtgctggttctttcgagcggtgggatctggcgcttccgacttgacgatctgtgctgtggaggtggagatcagaactcggcgggggagattccttttaggatttgtttcgttcttgggtttggatctggttgaggcttttaacagggtgacgggtctgtctgcaatttggcgaggtagagtggcggcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

374

Amino Acids

42.03

Weight (kDa)

5.79

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 98 - 161 4.1e-11 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1090
AccB1I GGYRCC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 953
AccI GTMKAC 1 cut(s) 602
AciI CCGC 7 cut(s) 107, 370, 413, 454, 953, 1015, 1118
AclWI GGATC 6 cut(s) 306, 566, 661, 892, 967, 1065
AfiI CCNNNNNNNGG 2 cut(s) 122, 438
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 7 cut(s) 317, 644, 685, 695, 730, 751, 763
AluBI AGCT 5 cut(s) 214, 283, 424, 541, 713
AluI AGCT 5 cut(s) 214, 283, 424, 541, 713
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 168, 183
AlwI GGATC 6 cut(s) 306, 566, 661, 892, 967, 1065
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 6 cut(s) 20, 23, 538, 776, 830, 929
Asp700I GAANNNNTTC 2 cut(s) 156, 332
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 3 cut(s) 361, 456, 854
AsuHPI GGTGA 5 cut(s) 218, 458, 812, 923, 1093
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 2 cut(s) 361, 854
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 555, 587
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 6 cut(s) 32, 35, 550, 788, 842, 941
BccI CCATC 3 cut(s) 31, 52, 580
BciVI GTATCC 1 cut(s) 620
BcoDI GTCTC 2 cut(s) 168, 183
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 536
BfoI RGCGCY 1 cut(s) 969
BfuI GTATCC 1 cut(s) 620
BisI GCNGC 8 cut(s) 21, 24, 455, 539, 777, 831, 930, 1119
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 8 cut(s) 22, 25, 456, 540, 778, 832, 931, 1120
Bme18I GGWCC 2 cut(s) 361, 854
BmgT120I GGNCC 3 cut(s) 361, 456, 854
BmiI GGNNCC 5 cut(s) 42, 335, 363, 845, 855
BmsI GCATC 3 cut(s) 180, 763, 802
BmtI GCTAGC 1 cut(s) 519
BplI GAGNNNNNCTC 2 cut(s) 413, 445
BpmI CTGGAG 1 cut(s) 293
Bpu10I CCTNAGC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 660
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 438
Bse1I ACTGG 4 cut(s) 116, 741, 823, 857
Bse8I GATNNNNATC 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 1 cut(s) 42
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 2 cut(s) 122, 438
BseMII CTCAG 7 cut(s) 62, 179, 298, 582, 669, 728, 736
BseNI ACTGG 4 cut(s) 116, 741, 823, 857
BseRI GAGGAG 3 cut(s) 320, 383, 596
BseXI GCAGC 6 cut(s) 32, 35, 550, 788, 842, 941
BsgI GTGCAG 1 cut(s) 948
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 122, 438
BsmAI GTCTC 2 cut(s) 168, 183
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 457
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 7 cut(s) 107, 370, 413, 454, 953, 1015, 1118
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 7 cut(s) 61, 178, 297, 583, 670, 727, 735
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 42, 335, 363, 845, 855
BspMAI CTGCAG 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 6 cut(s) 306, 566, 661, 892, 967, 1065
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 953
BsrI ACTGG 4 cut(s) 116, 741, 823, 857
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
BssT1I CCWWGG 1 cut(s) 660
Bst6I CTCTTC 2 cut(s) 204, 558
BstC8I GCNNGC 2 cut(s) 426, 517
BstDEI CTNAG 8 cut(s) 48, 165, 284, 591, 678, 714, 722, 787
BstF5I GGATG 1 cut(s) 42
BstH2I RGCGCY 1 cut(s) 969
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 8 cut(s) 301, 561, 656, 887, 962, 984, 1005, 1060
BstMAI GTCTC 2 cut(s) 168, 183
BstMBI GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 49, 421
BstNSI RCATGY 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 536
BstV1I GCAGC 6 cut(s) 32, 35, 550, 788, 842, 941
BstX2I RGATCY 4 cut(s) 298, 653, 959, 1057
BstYI RGATCY 4 cut(s) 298, 653, 959, 1057
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 1 cut(s) 457
BtgZI GCGATG 2 cut(s) 41, 947
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 928
BtsIMutI CAGTG 3 cut(s) 173, 734, 928
Cac8I GCNNGC 2 cut(s) 426, 517
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 968
Cfr13I GGNCC 3 cut(s) 361, 456, 854
CviAII CATG 6 cut(s) 58, 86, 338, 397, 548, 606
DdeI CTNAG 8 cut(s) 48, 165, 284, 591, 678, 714, 722, 787
DpnI GATC 8 cut(s) 300, 560, 655, 886, 961, 983, 1004, 1059
DpnII GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
DrdI GACNNNNNNGTC 1 cut(s) 1090
DseDI GACNNNNNNGTC 1 cut(s) 1090
Eam1104I CTCTTC 2 cut(s) 204, 558
EarI CTCTTC 2 cut(s) 204, 558
EciI GGCGGA 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 361, 854
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 6 cut(s) 61, 89, 341, 400, 551, 609
FaiI YATR 9 cut(s) 59, 87, 339, 359, 398, 434, 549, 607, 866
FaqI GGGAC 1 cut(s) 347
FatI CATG 6 cut(s) 57, 85, 337, 396, 547, 605
FauI CCCGC 3 cut(s) 100, 377, 1008
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 8 cut(s) 21, 24, 455, 539, 777, 831, 930, 1119
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 8 cut(s) 21, 24, 455, 539, 777, 831, 930, 1119
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 967
GluI GCNGC 8 cut(s) 21, 24, 455, 539, 777, 831, 930, 1119
GsuI CTGGAG 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 969
HaeIII GGCC 1 cut(s) 457
HhaI GCGC 1 cut(s) 968
Hin1II CATG 6 cut(s) 61, 89, 341, 400, 551, 609
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HinfI GANTC 5 cut(s) 409, 553, 595, 903, 1023
HphI GGTGA 5 cut(s) 218, 458, 812, 923, 1093
Hpy166II GTNNAC 3 cut(s) 328, 603, 673
Hpy188I TCNGA 6 cut(s) 9, 151, 558, 679, 973, 1007
Hpy188III TCNNGA 6 cut(s) 302, 470, 548, 685, 847, 900
Hpy8I GTNNAC 3 cut(s) 328, 603, 673
HpyAV CCTTC 6 cut(s) 25, 92, 116, 247, 629, 844
HpyCH4V TGCA 9 cut(s) 134, 171, 266, 341, 538, 776, 830, 929, 1097
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 421
HpyF3I CTNAG 8 cut(s) 48, 165, 284, 591, 678, 714, 722, 787
Hsp92II CATG 6 cut(s) 61, 89, 341, 400, 551, 609
HspAI GCGC 1 cut(s) 966
Kzo9I GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 6 cut(s) 32, 35, 550, 788, 842, 941
LweI GCATC 3 cut(s) 180, 763, 802
MaeI CTAG 1 cut(s) 516
MaeIII GTNAC 2 cut(s) 911, 1081
MalI GATC 8 cut(s) 300, 560, 655, 886, 961, 983, 1004, 1059
MbiI CCGCTC 1 cut(s) 953
MboI GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
MboII GAAGA 8 cut(s) 86, 221, 238, 329, 575, 700, 763, 766
MfeI CAATTG 2 cut(s) 135, 403
MflI RGATCY 4 cut(s) 298, 653, 959, 1057
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 135, 312, 403, 740, 768, 1098
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 996
MroXI GAANNNNTTC 2 cut(s) 156, 332
MseI TTAA 1 cut(s) 1074
MunI CAATTG 2 cut(s) 135, 403
MwoI GCNNNNNNNGC 2 cut(s) 49, 421
NdeII GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 6 cut(s) 61, 89, 341, 400, 551, 609
NlaIV GGNNCC 5 cut(s) 42, 335, 363, 845, 855
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 2 cut(s) 911, 1081
NspI RCATGY 1 cut(s) 609
PagI TCATGA 1 cut(s) 547
PciI ACATGT 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 156, 332
PfeI GAWTC 4 cut(s) 553, 595, 903, 1023
PflMI CCANNNNNTGG 1 cut(s) 438
PkrI GCNGC 8 cut(s) 22, 25, 456, 540, 778, 832, 931, 1120
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 605
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 42, 335, 363, 845, 855
PspPI GGNCC 3 cut(s) 361, 456, 854
PstI CTGCAG 1 cut(s) 540
PsuI RGATCY 4 cut(s) 298, 653, 959, 1057
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 1074
SatI GCNGC 8 cut(s) 21, 24, 455, 539, 777, 831, 930, 1119
Sau3AI GATC 8 cut(s) 298, 558, 653, 884, 959, 981, 1002, 1057
Sau96I GGNCC 3 cut(s) 361, 456, 854
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 180, 763, 802
SfcI CTRYAG 1 cut(s) 536
SinI GGWCC 2 cut(s) 361, 854
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 6 cut(s) 135, 312, 403, 740, 768, 1098
SsiI CCGC 7 cut(s) 107, 370, 413, 454, 953, 1015, 1118
SspMI CTAG 1 cut(s) 516
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 1 cut(s) 660
TaqI TCGA 3 cut(s) 561, 901, 949
TasI AATT 6 cut(s) 135, 312, 403, 740, 768, 1098
TauI GCSGC 2 cut(s) 457, 1121
TfiI GAWTC 4 cut(s) 553, 595, 903, 1023
Tru1I TTAA 1 cut(s) 1074
Tru9I TTAA 1 cut(s) 1074
TscAI CASTG 3 cut(s) 173, 741, 928
TseFI GTSAC 2 cut(s) 911, 1081
TseI GCWGC 6 cut(s) 20, 23, 538, 776, 830, 929
Tsp45I GTSAC 2 cut(s) 911, 1081
TspDTI ATGAA 7 cut(s) 44, 74, 87, 96, 102, 536, 780
TspGWI ACGGA 2 cut(s) 612, 930
TspRI CASTG 3 cut(s) 173, 741, 928
Van91I CCANNNNNTGG 1 cut(s) 438
VpaK11BI GGWCC 2 cut(s) 361, 854
XceI RCATGY 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 602
XmnI GAANNNNTTC 2 cut(s) 156, 332
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.