Rmu_sc0001460.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001460.1
OG0018355
Physical Location & Seq
Forward (+)
76721 .. 77038
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001460.1_g000015.1.cds

Sequence Viewer

Length: 318 bp
atgccacctcaactggcatccacttctcagtcacaaccgcagtccctcaagttaacatcctctttcaagttcaaggggaaagcaaaatcatcaaaatcagatacatcctctaagtcagaagaattaaaagagttagccaaaaaactcttagaacaagtagctaatctcagtaatgatgaagatgaatctgaagaagaagaagaagaaatctcttcccgatcctcatcctcatctcgcagtcatccagacagtcccggtaaaccagtcaaatgggctaattatcaagacagtcaggacccatatgcagacttcgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

4.85

Isoelectric Point (pI)

91.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 67, 73
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 295
BcnI CCSGG 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 297
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 18, 263
Bse8I GATNNNNATC 1 cut(s) 223
BseGI GGATG 5 cut(s) 17, 56, 104, 224, 241
BseJI GATNNNNATC 1 cut(s) 223
BseMII CTCAG 2 cut(s) 41, 181
BseNI ACTGG 2 cut(s) 18, 263
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 2 cut(s) 28, 237
BsmFI GGGAC 2 cut(s) 28, 237
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 40, 180
BspLI GGNNCC 1 cut(s) 297
BspPI GGATC 1 cut(s) 213
BsrI ACTGG 2 cut(s) 18, 263
BssMI GATC 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 251, 290
Bst6I CTCTTC 1 cut(s) 217
BstDEI CTNAG 4 cut(s) 27, 111, 148, 167
BstF5I GGATG 5 cut(s) 17, 56, 104, 224, 241
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 17, 56, 104, 224, 241
Cfr13I GGNCC 1 cut(s) 295
CviJI RGCY 3 cut(s) 137, 161, 275
CviKI_1 RGCY 3 cut(s) 137, 161, 275
DdeI CTNAG 4 cut(s) 27, 111, 148, 167
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 295
FaiI YATR 2 cut(s) 301, 303
FaqI GGGAC 2 cut(s) 28, 237
FauNDI CATATG 1 cut(s) 301
FokI GGATG 5 cut(s) 4, 43, 91, 211, 228
HapII CCGG 1 cut(s) 255
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 1 cut(s) 185
HpaI GTTAAC 1 cut(s) 54
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 2 cut(s) 54, 260
Hpy188I TCNGA 3 cut(s) 100, 118, 190
Hpy188III TCNNGA 4 cut(s) 216, 245, 284, 293
Hpy8I GTNNAC 2 cut(s) 54, 260
HpyCH4III ACNGT 2 cut(s) 251, 290
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 4 cut(s) 27, 111, 148, 167
KspAI GTTAAC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 258, 268, 276, 278
LweI GCATC 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 8 cut(s) 131, 191, 203, 204, 206, 209, 212, 215
MluCI AATT 2 cut(s) 122, 277
MnlI CCTC 6 cut(s) 18, 56, 70, 118, 232, 238
MseI TTAA 2 cut(s) 53, 125
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 255
NdeI CATATG 1 cut(s) 301
NdeII GATC 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
SaqAI TTAA 2 cut(s) 53, 125
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 1 cut(s) 295
ScrFI CCNGG 1 cut(s) 255
SetI ASST 2 cut(s) 10, 163
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 122, 277
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 251, 290
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 122, 277
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 53, 125
Tru9I TTAA 2 cut(s) 53, 125
TseFI GTSAC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 192, 198
VpaK11BI GGWCC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.