Rmu_sc0002563.1_g000050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002563.1
OG0018355
Physical Location & Seq
Reverse (-)
163551 .. 164009
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002563.1_g000050.1.cds

Sequence Viewer

Length: 459 bp
atgaagtcaaagaacatattctccagacacttcctggtcaaatggtgggataaattcaaaactgaaagaattatctcccaatttaatgaagaatttccagtcactccatcacaacctactcagttaagagctccagtcactccaatgccaccccaaacggcatccacttcccagtcacaccctaaatccctcaagtcgcattccttttccaagtccaaggggaaagcaaagtcaacaaaatcagatacatcctccaagttagaagaattgaaagagttagcaaaaaagttcttagcacaagccgctaacctcagtaatgatgaagatgaatctaatgaagaagaagaaatttcttcccgttcctcatcctcatctcgcaatcatccaggcactctaggtaaaccagtcaaatgggctgattttcaagacagtcaagatccatatgaagattttgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.25

Weight (kDa)

7.92

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 3 cut(s) 53, 92, 348
AgsI TTSAA 3 cut(s) 58, 271, 425
AjnI CCWGG 2 cut(s) 33, 385
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 1 cut(s) 431
ApoI RAATTY 3 cut(s) 53, 92, 348
Asp700I GAANNNNTTC 2 cut(s) 17, 93
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 35, 387
BfaI CTAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 35, 387
BmrFI CCNGG 2 cut(s) 35, 387
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 166
BpmI CTGGAG 2 cut(s) 7, 117
BpuEI CTTGAG 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bse1I ACTGG 4 cut(s) 98, 134, 172, 404
BseBI CCWGG 2 cut(s) 35, 387
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 4 cut(s) 161, 248, 365, 382
BseMII CTCAG 2 cut(s) 134, 325
BseNI ACTGG 4 cut(s) 98, 134, 172, 404
BsiHKAI GWGCWC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 1 cut(s) 303
BspCNI CTCAG 2 cut(s) 133, 324
BspPI GGATC 1 cut(s) 431
BsrI ACTGG 4 cut(s) 98, 134, 172, 404
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 35, 387
Bst4CI ACNGT 1 cut(s) 431
BstDEI CTNAG 3 cut(s) 120, 292, 311
BstF5I GGATG 4 cut(s) 161, 248, 365, 382
BstKTI GATC 1 cut(s) 439
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 2 cut(s) 35, 387
BstSCI CCNGG 2 cut(s) 33, 385
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 1 cut(s) 436
BtsCI GGATG 4 cut(s) 161, 248, 365, 382
CviJI RGCY 3 cut(s) 131, 302, 416
CviKI_1 RGCY 3 cut(s) 131, 302, 416
DdeI CTNAG 3 cut(s) 120, 292, 311
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 33, 385
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 216
FaiI YATR 3 cut(s) 17, 442, 444
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 4 cut(s) 148, 235, 352, 369
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 395
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 7, 117
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 234, 401
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 3 cut(s) 24, 425, 434
Hpy8I GTNNAC 2 cut(s) 234, 401
HpyCH4III ACNGT 1 cut(s) 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 3 cut(s) 120, 292, 311
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 20, 37, 47, 111, 147, 185, 372, 399, 417
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 3 cut(s) 100, 136, 174
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 8 cut(s) 101, 275, 335, 345, 350, 353, 356, 458
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 6 cut(s) 53, 69, 80, 92, 266, 348
MnlI CCTC 5 cut(s) 200, 262, 320, 373, 379
MroXI GAANNNNTTC 2 cut(s) 17, 93
MseI TTAA 2 cut(s) 84, 125
MslI CAYNNNNRTG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 35, 387
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 35, 387
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeI CATATG 1 cut(s) 442
NdeII GATC 1 cut(s) 436
NmuCI GTSAC 3 cut(s) 100, 136, 174
PctI GAATGC 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 17, 93
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 33, 385
PspGI CCWGG 2 cut(s) 33, 385
PsuI RGATCY 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 84, 125
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 35, 387
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 118, 133, 312, 400
SfaNI GCATC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 6 cut(s) 53, 69, 80, 92, 266, 348
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 33, 385
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 431
TasI AATT 6 cut(s) 53, 69, 80, 92, 266, 348
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 84, 125
Tru9I TTAA 2 cut(s) 84, 125
TseFI GTSAC 3 cut(s) 100, 136, 174
Tsp45I GTSAC 3 cut(s) 100, 136, 174
TspDTI ATGAA 6 cut(s) 17, 102, 336, 342, 351, 459
XapI RAATTY 3 cut(s) 53, 92, 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 17, 93
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.