Rmu_sc0002026.1_g000015

Villin-4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002026.1
OG0018355
Physical Location & Seq
Forward (+)
66950 .. 67441
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002026.1_g000015.1.cds

Sequence Viewer

Length: 492 bp
atggccaaatacaagctcccctggatcttcaaatggcattacgaagtcaaagaacatgtagtctcaagtcatttcctagtcaaattttgggataaattcaaaactgaaagaattatctcccaatttaatgaagaatttccagttattccatcacaacctactcagtcaagagctccagtcactccaatgccaccccaaacggcatctacttcccagtcacaacctaaatccctcaagtcaccttcttcttccaagtcaaaggggaaagcaaaatcagatacatcctccaagtcagaagaattgaaagagttagcaaaaaagctcttagcacaagcagccactctcagtaatgatgaaaatgaatctgatgaagaagaagaaatttcttctcgatcatcatcctcatctcgcagtcatcccgacactcccggtaagccagtcaaatgggctaatttccaagatagccaagacccatatgaagacttcgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0006810 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010053 GO:0010054 GO:0010639 GO:0015629 GO:0016043 GO:0016049 GO:0016482 GO:0021700 GO:0022411 GO:0022622 GO:0030029 GO:0030036 GO:0030042 GO:0030154 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032432 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0033043 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0043624 GO:0043933 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046907 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051014 GO:0051015 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051261 GO:0051493 GO:0051494 GO:0051592 GO:0051641 GO:0051649 GO:0051693 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0080147 GO:0090066 GO:0090558 GO:0090627 GO:0097305 GO:0097435 GO:0099402 GO:0099636 GO:0110053 GO:1901700 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04666 ko04810 ko05203 map04666 map04810 map05203
Pfam Domains
Protein Families
Gelsolin VHP

Protein Analysis

163

Amino Acids

18.51

Weight (kDa)

6.45

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 83, 95, 134, 381
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 3 cut(s) 31, 100, 304
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 3 cut(s) 16, 173, 322
AluI AGCT 3 cut(s) 16, 173, 322
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 32
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 4 cut(s) 83, 95, 134, 381
Asp700I GAANNNNTTC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 231
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 22, 429
BmrFI CCNGG 2 cut(s) 22, 429
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 159
BpuEI CTTGAG 2 cut(s) 49, 218
BpuMI CCSGG 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 140, 176, 214, 437
Bse8I GATNNNNATC 1 cut(s) 397
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 20
BseGI GGATG 3 cut(s) 281, 398, 415
BseJI GATNNNNATC 1 cut(s) 397
BseMII CTCAG 2 cut(s) 176, 358
BseNI ACTGG 4 cut(s) 140, 176, 214, 437
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 1 cut(s) 429
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 2 cut(s) 24, 392
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 175, 357
BspPI GGATC 1 cut(s) 32
BsrI ACTGG 4 cut(s) 140, 176, 214, 437
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 2 cut(s) 24, 392
Bst2UI CCWGG 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 162, 325, 344
BstF5I GGATG 3 cut(s) 281, 398, 415
BstKTI GATC 2 cut(s) 27, 395
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 24, 392
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 20, 427
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 444
BstYI RGATCY 1 cut(s) 24
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 281, 398, 415
CviAII CATG 1 cut(s) 56
CviJI RGCY 8 cut(s) 5, 16, 173, 322, 338, 436, 449, 465
CviKI_1 RGCY 8 cut(s) 5, 16, 173, 322, 338, 436, 449, 465
DdeI CTNAG 3 cut(s) 162, 325, 344
DpnI GATC 2 cut(s) 26, 394
DpnII GATC 2 cut(s) 24, 392
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 20
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 57, 475, 477
FatI CATG 1 cut(s) 55
FauNDI CATATG 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 3 cut(s) 268, 385, 402
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 429
Hin1II CATG 1 cut(s) 59
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 231
Hpy188I TCNGA 3 cut(s) 277, 295, 367
Hpy188III TCNNGA 3 cut(s) 168, 390, 419
HpyAV CCTTC 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 162, 325, 344
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 2 cut(s) 24, 392
LmnI GCTCC 2 cut(s) 21, 178
LpnPI CCDG 7 cut(s) 7, 34, 153, 189, 227, 442, 450
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 3 cut(s) 178, 216, 237
MalI GATC 2 cut(s) 26, 394
MboI GATC 2 cut(s) 24, 392
MflI RGATCY 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 83, 95, 111, 122, 134, 299, 381, 451
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 242, 295, 412
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 135
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 22, 429
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 475
NdeII GATC 2 cut(s) 24, 392
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 3 cut(s) 178, 216, 237
NspI RCATGY 1 cut(s) 59
PciI ACATGT 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 337
PscI ACATGT 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 24, 392
ScrFI CCNGG 2 cut(s) 22, 429
SduI GDGCHC 1 cut(s) 175
SetI ASST 6 cut(s) 18, 160, 175, 226, 244, 324
SfaNI GCATC 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 64, 233
SmoI CTYRAG 2 cut(s) 64, 233
Sse9I AATT 8 cut(s) 83, 95, 111, 122, 134, 299, 381, 451
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 20, 427
TaqI TCGA 2 cut(s) 391, 486
TasI AATT 8 cut(s) 83, 95, 111, 122, 134, 299, 381, 451
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 3 cut(s) 178, 216, 237
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 3 cut(s) 178, 216, 237
TspDTI ATGAA 5 cut(s) 144, 369, 375, 384, 492
XapI RAATTY 4 cut(s) 83, 95, 134, 381
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.