Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001484.1

Orthogroup ID

OG0011654

Physical Location & Seq

Genomic Coordinates Forward (+)

139824 .. 144906

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3660 bp

atggagagttatttgcaagagaactttggggaagtgaaggctaagggctcgtctgaagaaacgttgcagaaatggaggaagctctgtggagttgtcaagaacccgaaaagaaggtttcggttcactgctaatctttccaagcgtacagaggctgcggctatgcgccgtaccaatcaggagaaattgaggattgcagttttggtttctaaagctgcatttcaatttattcaaggtgtacagccaagtgactatgttctacctcaggaagttaaagcggcaggttttggtatctgtgctgatgaattgggatccattgtggaaggccatgatgtaaagaagctaaaatttcatggaggggtaactggcctttcagaaaagctctccacatctataaatgatgggcttaataccgaaactgatttgcacactcgaagacaagagatttatggcattaataagtttacagagagcgaacagcgtgggggggttcataatttcatgcttagtcaaaatttctggtgtggtgcaggtgtacagccaagtgactatgttctacctcaggaagttaaagcggcaggttttggtatctgtgctgatgaattgggatccattgtggaaggccatgatgtaaagaagctaaaatttcatggaggggtaactggcctttcagaaaagctctccacatctataaatgatgggctcaataccgaaactgatttgcacactcgaagacaagagatttatggcattaataagtttacagagagcgaacagcgtggtttctttgtatttgtttgggaagcccttcaggacatgactcttatgatcctaggagtgtgtgcttttgtgtcattgatcgttggactagcaatggaagggtggccagcaggagctcatgatgggcttggaattgttgcgagtattatgctggttgtgtttgtcacggcaacaagtgattatcggcaatcactacagttcagggacttggacaaggagaagaagaagattgctaataccgaaactgatttgcacacgcgaagacaagagatttatggcattaataagtttacagagagcgaacagcgtggtttctttgtatttgtttgggaagcccttcaggacatgactcttatgatcctaggagtgtgtgcttttgtgtcattgatcgttggactagcaatggaagggtggccagcaggagctcatgatgggcttggaattgttgcgagtattatgctggttgtgtttgtcacggcaacaagtgattatcggcaatcactacagttcagggacttggacaaggagaagaagaagattgctatgcaagtaacaagaaatggatataggcagaaaatgtctatttatgaattactacctggtgatattgtacacctttctattggagaccaagtacctgcagatggtctatttgtttctggtttttctgtcttaattgatgaatccagtttaactggtgagagtgagcctattatggtaactcttgaaaatccctttcttctttctggaactaaggttcaagatggatcatgcaagatgatggttaccacagtcgggatgagaactcaatggggaaaattgatggctacactaagtgaaggtggagatgatgaaaccccattgcaggtcaagttgaatggagtggcaaccattattggtaagataggacttttctttgctgttgtgacttttgctgttatggtgcaaggactgtttagtcgaaaactgcaagaagggacacactggagctggaatggagatgatgcaatgcaattgttagagttctttgctgttgcagttacgattgttgttgttgctgtccctgaggggctgccactggctgtgacattgagtcttgcatttgccatgaagaaaatgatgaatgataaggcgcttgttcgccatctggcagcttgcgaaactatgggatcagccacgaacatttgcagtgacaaaactgggacactgacaaccaacaaaatgactgttgtgaagtcatgcatttgcatgaatgtcaaagatgtgagcaacctcagtgattcttcaagcctgttctctgatcttccggaatctgtgaagaaggttttgctgcaatcaatatttaacaacactggtggagaagttgtggttagcaaaggtggtaagactgagatgttgggaacacctaccgacactgctttgttggcgtttggcttggcacttggtggagattttcaagcagaaagaaaagcttctaaacttgtgaaagttgagcctttcaactcaacgaagaaaagaatgggggtcgtcttggagcttcctgaaggaggaggtttcagagcacatactaaaggtgcttcagaaatcattttggccaactgtgacaaggtgatcaattcaaagggtgaaactgttcctcttgatgaagcatccattaagcatctccaagctactatcaatgattttgcttgtgaggctcttcgaactatctgccttggctatatggaattagaaaaaggattctctgctgaggatcccattccaacttctggatatacttgcataggaattgttggcattaaagatcctgttcgtcccggtgtcaaggagtctgttgcagtttgccgttcagctggtatcacagtaagaatggttacaggagacaatattaacactgcaaaggccatagcaagggaatgtgggattctcactgacgatggattagccattgaaggtccggagttcagggagaagaatcaagaagaattgctttcactgatacctaaaattcaggttatggcgcgatcatcgcctctagacaagcataccctggtaaagcacttgaggaccacatttgatgaagtcgttgctgtaactggtgatggaacaaatgatgccccagcacttcatgaggcagatattggactagccatgggcattgccggaactgaggtggctaaggagagtgctgatgttctaattctggatgataatttctccacaattgtgacagtggcaaaatggggacgttcggtttacatcaatatccaaaaatttgtgcagttccagctgactgttaatattgttgcattgattgttaacttctcctcggcctgtctgacagggagtgctcccctcactgctgttcagctattgtgggtgaacatgattatggacacactgggagcacttgcacttgcaactgagcctccaaataatgacttaatgaagcgtccgccggttggaaagaggcaaaatttcatcagtaatgtaatgtggaggaatattttagggcagtctttctatcaatttacagtgttatggcttcttcaggctaaaggagaatcaatatttcgtcttaatggaccagattctaacttggtcctgaacacactcattttcaatacattcgtcttctgtcaggtgtttaacgaaataagctcgcgtgaaatggaagaaatagatgttttcaagggcatattggataattacgttttcgttgcagtcctcagtgccacagttgtgttccaaatcattattatcgagtttctggggaagtttgctagcacagcacctctcacctttgttcaatggtttgttacagtattcattggctttttagggatgccaattgctgctggtttgaagaagattcctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0008150 GO:0008324 GO:0009555 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042175 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

1219

Amino Acids

133.17

Weight (kDa)

5.75

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	5 - 50	4.1e-21	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	216 - 284	7.4e-10	Cation transporter/ATPase, N-terminus
Cation_ATPase_N	PF00690	345 - 387	8.1e-06	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	440 - 536	5.4e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	717 - 865	9e-33	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	839 - 972	2.9e-11	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	1043 - 1216	4.4e-42	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22950 AT4G37640
fragaria_vesca	FvH4_1g17620
malus_domestica	MD02G1185000.v1.1 MD15G1296400.v1.1
prunus_persica	Prupe.6G221800_v2.0.a1 Prupe.6G221800_v2.0.a1
pyrus_communis	pycom02g14990 pycom15g25970
rosa_chinensis	RchiOBHm_Chr2g0107911
rosa_laevigata	RLG00000017627
rosa_multiflora	Rmu_sc0001484.1_g000032
rosa_roxburghii	Rroxscaffold_2G00135800
rosa_rugosa	Rorug02G0148700 Rorug02G0148800 Rorug02G0148800
rosa_samantha	Rh2BG210900 Rh2CG202700
rosa_wichuraiana	Rw2G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	518
AasI	GACNNNNNNGTC	1 cut(s)	1734
Acc36I	ACCTGC	5 cut(s)	269, 518, 566, 1423, 1633
AccB7I	CCANNNNNTGG	1 cut(s)	2546
AccII	CGCG	3 cut(s)	1036, 2800, 3442
AccIII	TCCGGA	2 cut(s)	2083, 2734
AciI	CCGC	4 cut(s)	155, 275, 572, 3233
AclI	AACGTT	1 cut(s)	62
AcoI	YGGCCR	3 cut(s)	881, 1190, 2370
AcsI	RAATTY	6 cut(s)	344, 511, 641, 2784, 3050, 3253
AcuI	CTGAAG	6 cut(s)	75, 791, 1100, 2340, 2340, 3311
AdeI	CACNNNGTG	2 cut(s)	1613, 2222
AfaI	GTAC	6 cut(s)	145, 169, 237, 534, 1389, 1413
AfiI	CCNNNNNNNGG	7 cut(s)	1421, 1572, 1642, 2324, 2546, 2688, 3239
AhdI	GACNNNNNGTC	1 cut(s)	1869
AjnI	CCWGG	2 cut(s)	1375, 2826
AleI	CACNNNNGTG	2 cut(s)	3002, 3518
AloI	GAACNNNNNNTCC	2 cut(s)	1518, 1550
Alw21I	GWGCWC	5 cut(s)	895, 1204, 2341, 3130, 3187
Alw26I	GTCTC	2 cut(s)	1398, 2652
AlwNI	CAGNNNCTG	1 cut(s)	152
Aor13HI	TCCGGA	2 cut(s)	2083, 2734
AoxI	GGCC	9 cut(s)	322, 364, 619, 661, 881, 1190, 2370, 2679, 3108
ApeKI	GCWGC	6 cut(s)	152, 212, 1849, 1928, 2107, 3632
ApoI	RAATTY	6 cut(s)	344, 511, 641, 2784, 3050, 3253
AseI	ATTAAT	3 cut(s)	453, 750, 1059
Asp700I	GAANNNNTTC	4 cut(s)	804, 1113, 2248, 2409
AspA2I	CCTAGG	2 cut(s)	829, 1138
AspLEI	GCGC	3 cut(s)	165, 1912, 2800
AspS9I	GGNCC	4 cut(s)	2732, 2844, 3362, 3379
AsuC2I	CCSGG	1 cut(s)	2595
AsuHPI	GGTGA	7 cut(s)	1391, 1487, 2398, 2414, 2888, 3169, 3568
AsuII	TTCGAA	1 cut(s)	2479
AsuNHI	GCTAGC	1 cut(s)	3560
AvaII	GGWCC	4 cut(s)	2732, 2844, 3362, 3379
AvrII	CCTAGG	2 cut(s)	829, 1138
AxyI	CCTNAGG	3 cut(s)	261, 558, 1842
BalI	TGGCCA	3 cut(s)	883, 1192, 2372
BamHI	GGATCC	3 cut(s)	308, 605, 2530
BanII	GRGCYC	4 cut(s)	50, 702, 895, 1204
BbsI	GAAGAC	4 cut(s)	439, 736, 1045, 3403
Bbv12I	GWGCWC	5 cut(s)	895, 1204, 2341, 3130, 3187
BbvCI	CCTCAGC	1 cut(s)	2526
BbvI	GCAGC	6 cut(s)	139, 199, 1836, 1940, 2094, 3619
BceAI	ACGGC	4 cut(s)	150, 960, 1269, 2607
BcgI	CGANNNNNNTGC	6 cut(s)	907, 941, 1216, 1250, 2469, 2503
BciT130I	CCWGG	2 cut(s)	1377, 2828
BclI	TGATCA	1 cut(s)	2388
BcnI	CCSGG	1 cut(s)	2595
BcoDI	GTCTC	2 cut(s)	1398, 2652
BfaI	CTAG	7 cut(s)	830, 866, 1139, 1175, 2813, 2924, 3561
BfmI	CTRYAG	3 cut(s)	971, 1280, 1416
BfoI	RGCGCY	1 cut(s)	1913
BfuAI	ACCTGC	5 cut(s)	269, 518, 566, 1423, 1633
BisI	GCNGC	9 cut(s)	153, 156, 213, 276, 573, 1850, 1929, 2108, 3633
BlnI	CCTAGG	2 cut(s)	829, 1138
BlsI	GCNGC	9 cut(s)	154, 157, 214, 277, 574, 1851, 1930, 2109, 3634
Bme1390I	CCNGG	3 cut(s)	1377, 2595, 2828
Bme18I	GGWCC	4 cut(s)	2732, 2844, 3362, 3379
BmeRI	GACNNNNNGTC	1 cut(s)	1869
BmgT120I	GGNCC	4 cut(s)	2732, 2844, 3362, 3379
BmiI	GGNNCC	3 cut(s)	310, 607, 2532
BmrFI	CCNGG	3 cut(s)	1377, 2595, 2828
BmrI	ACTGGG	2 cut(s)	1986, 3188
BmsI	GCATC	5 cut(s)	1771, 2435, 2446, 2881, 3612
BmtI	GCTAGC	1 cut(s)	3564
BmuI	ACTGGG	2 cut(s)	1986, 3188
BpiI	GAAGAC	4 cut(s)	439, 736, 1045, 3403
BpmI	CTGGAG	1 cut(s)	1783
Bpu10I	CCTNAGC	3 cut(s)	42, 2526, 2955
Bpu14I	TTCGAA	1 cut(s)	2479
BpuEI	CTTGAG	1 cut(s)	2860
BpuMI	CCSGG	1 cut(s)	2595
BsaI	GGTCTC	1 cut(s)	1398
BsaJI	CCNNGG	6 cut(s)	829, 1138, 2491, 2826, 2928, 3105
BsaWI	WCCGGW	2 cut(s)	2083, 2734
BsaXI	ACNNNNNCTCC	6 cut(s)	1395, 1425, 2127, 2157, 3190, 3220
Bsc4I	CCNNNNNNNGG	7 cut(s)	1421, 1572, 1642, 2324, 2546, 2688, 3239
Bse118I	RCCGGY	1 cut(s)	3235
Bse21I	CCTNAGG	3 cut(s)	261, 558, 1842
Bse3DI	GCAATG	5 cut(s)	876, 1185, 1637, 1791, 2934
BseAI	TCCGGA	2 cut(s)	2083, 2734
BseBI	CCWGG	2 cut(s)	1377, 2828
BseDI	CCNNGG	6 cut(s)	829, 1138, 2491, 2826, 2928, 3105
BseGI	GGATG	4 cut(s)	1581, 2426, 2989, 3627
BseLI	CCNNNNNNNGG	7 cut(s)	1421, 1572, 1642, 2324, 2546, 2688, 3239
BseMI	GCAATG	5 cut(s)	876, 1185, 1637, 1791, 2934
BseMII	CTCAG	9 cut(s)	275, 572, 1833, 2065, 2157, 2517, 2937, 3192, 3520
BseRI	GAGGAG	2 cut(s)	2340, 3094
BseXI	GCAGC	6 cut(s)	139, 199, 1836, 1940, 2094, 3619
BseYI	CCCAGC	1 cut(s)	2896
BsgI	GTGCAG	2 cut(s)	546, 3077
Bsh1236I	CGCG	3 cut(s)	1036, 2800, 3442
BshFI	GGCC	9 cut(s)	324, 366, 621, 663, 883, 1192, 2372, 2681, 3110
BsiHKAI	GWGCWC	5 cut(s)	895, 1204, 2341, 3130, 3187
BsiSI	CCGG	5 cut(s)	2084, 2595, 2735, 2940, 3236
BslFI	GGGAC	7 cut(s)	995, 1304, 1768, 1823, 1993, 2577, 3036
BslI	CCNNNNNNNGG	7 cut(s)	1421, 1572, 1642, 2324, 2546, 2688, 3239
BsmAI	GTCTC	2 cut(s)	1398, 2652
BsmFI	GGGAC	7 cut(s)	995, 1304, 1768, 1823, 1993, 2577, 3036
BsnI	GGCC	9 cut(s)	324, 366, 621, 663, 883, 1192, 2372, 2681, 3110
Bso31I	GGTCTC	1 cut(s)	1398
Bsp119I	TTCGAA	1 cut(s)	2479
Bsp1286I	GDGCHC	7 cut(s)	50, 702, 895, 1204, 2341, 3130, 3187
Bsp13I	TCCGGA	2 cut(s)	2083, 2734
Bsp1407I	TGTACA	3 cut(s)	235, 532, 1387
Bsp19I	CCATGG	1 cut(s)	2928
BspACI	CCGC	4 cut(s)	155, 275, 572, 3233
BspANI	GGCC	9 cut(s)	324, 366, 621, 663, 883, 1192, 2372, 2681, 3110
BspCNI	CTCAG	9 cut(s)	274, 571, 1834, 2064, 2158, 2518, 2938, 3193, 3519
BspEI	TCCGGA	2 cut(s)	2083, 2734
BspFNI	CGCG	3 cut(s)	1036, 2800, 3442
BspHI	TCATGA	3 cut(s)	895, 1204, 2905
BspLI	GGNNCC	3 cut(s)	310, 607, 2532
BspMAI	CTGCAG	1 cut(s)	1420
BspMI	ACCTGC	5 cut(s)	269, 518, 566, 1423, 1633
BspOI	GCTAGC	1 cut(s)	3564
BspQI	GCTCTTC	1 cut(s)	2481
BspT104I	TTCGAA	1 cut(s)	2479
BspTNI	GGTCTC	1 cut(s)	1398
BsrDI	GCAATG	5 cut(s)	876, 1185, 1637, 1791, 2934
BsrFI	RCCGGY	1 cut(s)	3235
BsrGI	TGTACA	3 cut(s)	235, 532, 1387
BssAI	RCCGGY	1 cut(s)	3235
BssECI	CCNNGG	6 cut(s)	829, 1138, 2491, 2826, 2928, 3105
BssT1I	CCWWGG	4 cut(s)	829, 1138, 2491, 2928
Bst2UI	CCWGG	2 cut(s)	1377, 2828
Bst6I	CTCTTC	1 cut(s)	2481
BstAUI	TGTACA	3 cut(s)	235, 532, 1387
BstBI	TTCGAA	1 cut(s)	2479
BstC8I	GCNNGC	5 cut(s)	885, 1194, 1933, 3440, 3562
BstDSI	CCRYGG	1 cut(s)	2928
BstEII	GGTNACC	1 cut(s)	1561
BstENI	CCTNNNNNAGG	1 cut(s)	2322
BstF5I	GGATG	4 cut(s)	1581, 2426, 2989, 3627
BstFNI	CGCG	3 cut(s)	1036, 2800, 3442
BstH2I	RGCGCY	1 cut(s)	1913
BstHHI	GCGC	3 cut(s)	165, 1912, 2800
BstMAI	GTCTC	2 cut(s)	1398, 2652
BstMWI	GCNNNNNNNGC	5 cut(s)	2201, 2471, 2806, 3064, 3566
BstNI	CCWGG	2 cut(s)	1377, 2828
BstPI	GGTNACC	1 cut(s)	1561
BstSCI	CCNGG	3 cut(s)	1375, 2593, 2826
BstSFI	CTRYAG	3 cut(s)	971, 1280, 1416
BstUI	CGCG	3 cut(s)	1036, 2800, 3442
BstV1I	GCAGC	6 cut(s)	139, 199, 1836, 1940, 2094, 3619
BstV2I	GAAGAC	4 cut(s)	439, 736, 1045, 3403
BstX2I	RGATCY	4 cut(s)	308, 605, 2530, 2581
BstYI	RGATCY	4 cut(s)	308, 605, 2530, 2581
Bsu36I	CCTNAGG	3 cut(s)	261, 558, 1842
BsuRI	GGCC	9 cut(s)	324, 366, 621, 663, 883, 1192, 2372, 2681, 3110
BtgI	CCRYGG	1 cut(s)	2928
BtgZI	GCGATG	1 cut(s)	2790
BtsCI	GGATG	4 cut(s)	1581, 2426, 2989, 3627
BtsI	GCAGTG	5 cut(s)	123, 1972, 2190, 2670, 3135
BveI	ACCTGC	5 cut(s)	269, 518, 566, 1423, 1633
Cac8I	GCNNGC	5 cut(s)	885, 1194, 1933, 3440, 3562
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	3 cut(s)	895, 1204, 2905
CfoI	GCGC	3 cut(s)	165, 1912, 2800
Cfr10I	RCCGGY	1 cut(s)	3235
Cfr13I	GGNCC	4 cut(s)	2732, 2844, 3362, 3379
CseI	GACGC	1 cut(s)	3218
CsiI	ACCWGGT	1 cut(s)	1375
Csp6I	GTAC	6 cut(s)	144, 168, 236, 533, 1388, 1412
CspCI	CAANNNNNGTGG	2 cut(s)	2113, 2148
CviQI	GTAC	6 cut(s)	144, 168, 236, 533, 1388, 1412
DraIII	CACNNNGTG	2 cut(s)	1613, 2222
DrdI	GACNNNNNNGTC	1 cut(s)	1734
DriI	GACNNNNNGTC	1 cut(s)	1869
DseDI	GACNNNNNNGTC	1 cut(s)	1734
EaeI	YGGCCR	3 cut(s)	881, 1190, 2370
Eam1104I	CTCTTC	1 cut(s)	2481
Eam1105I	GACNNNNNGTC	1 cut(s)	1869
EarI	CTCTTC	1 cut(s)	2481
EciI	GGCGGA	1 cut(s)	3222
Ecl136II	GAGCTC	2 cut(s)	893, 1202
Eco130I	CCWWGG	4 cut(s)	829, 1138, 2491, 2928
Eco24I	GRGCYC	4 cut(s)	50, 702, 895, 1204
Eco31I	GGTCTC	1 cut(s)	1398
Eco47I	GGWCC	4 cut(s)	2732, 2844, 3362, 3379
Eco53kI	GAGCTC	2 cut(s)	893, 1202
Eco57I	CTGAAG	6 cut(s)	75, 791, 1100, 2340, 2340, 3311
Eco81I	CCTNAGG	3 cut(s)	261, 558, 1842
Eco91I	GGTNACC	1 cut(s)	1561
EcoICRI	GAGCTC	2 cut(s)	893, 1202
EcoNI	CCTNNNNNAGG	1 cut(s)	2322
EcoO65I	GGTNACC	1 cut(s)	1561
EcoRII	CCWGG	2 cut(s)	1375, 2826
EcoT14I	CCWWGG	4 cut(s)	829, 1138, 2491, 2928
EcoT22I	ATGCAT	1 cut(s)	2021
EcoT38I	GRGCYC	4 cut(s)	50, 702, 895, 1204
ErhI	CCWWGG	4 cut(s)	829, 1138, 2491, 2928
FalI	AAGNNNNNCTT	4 cut(s)	2233, 2265, 2751, 2783
FaqI	GGGAC	7 cut(s)	995, 1304, 1768, 1823, 1993, 2577, 3036
FbaI	TGATCA	1 cut(s)	2388
Fnu4HI	GCNGC	9 cut(s)	153, 156, 213, 276, 573, 1850, 1929, 2108, 3633
FokI	GGATG	4 cut(s)	1588, 2413, 2996, 3634
FriOI	GRGCYC	4 cut(s)	50, 702, 895, 1204
Fsp4HI	GCNGC	9 cut(s)	153, 156, 213, 276, 573, 1850, 1929, 2108, 3633
FspBI	CTAG	7 cut(s)	830, 866, 1139, 1175, 2813, 2924, 3561
GlaI	GCGC	3 cut(s)	164, 1911, 2799
GluI	GCNGC	9 cut(s)	153, 156, 213, 276, 573, 1850, 1929, 2108, 3633
GsaI	CCCAGC	1 cut(s)	2900
GsuI	CTGGAG	1 cut(s)	1783
HaeII	RGCGCY	1 cut(s)	1913
HaeIII	GGCC	9 cut(s)	324, 366, 621, 663, 883, 1192, 2372, 2681, 3110
HapII	CCGG	5 cut(s)	2084, 2595, 2735, 2940, 3236
HgaI	GACGC	1 cut(s)	3218
HhaI	GCGC	3 cut(s)	165, 1912, 2800
Hin6I	GCGC	3 cut(s)	163, 1910, 2798
HinP1I	GCGC	3 cut(s)	163, 1910, 2798
HincII	GTYRAC	1 cut(s)	3097
HindII	GTYRAC	1 cut(s)	3097
HindIII	AAGCTT	1 cut(s)	2247
HpaI	GTTAAC	1 cut(s)	3097
HpaII	CCGG	5 cut(s)	2084, 2595, 2735, 2940, 3236
HphI	GGTGA	7 cut(s)	1391, 1487, 2398, 2414, 2888, 3169, 3568
Hpy188I	TCNGA	7 cut(s)	55, 373, 670, 2077, 2336, 2359, 3117
HpyCH4IV	ACGT	3 cut(s)	62, 3025, 3489
HpyF10VI	GCNNNNNNNGC	5 cut(s)	2201, 2471, 2806, 3064, 3566
HpySE526I	ACGT	3 cut(s)	62, 3025, 3489
HspAI	GCGC	3 cut(s)	163, 1910, 2798
Kpn2I	TCCGGA	2 cut(s)	2083, 2734
Ksp22I	TGATCA	1 cut(s)	2388
KspAI	GTTAAC	1 cut(s)	3097
LguI	GCTCTTC	1 cut(s)	2481
LmnI	GCTCC	6 cut(s)	890, 1199, 1764, 2311, 3133, 3182
Lsp1109I	GCAGC	6 cut(s)	139, 199, 1836, 1940, 2094, 3619
LweI	GCATC	5 cut(s)	1771, 2435, 2446, 2881, 3612
MabI	ACCWGGT	1 cut(s)	1375
MaeI	CTAG	7 cut(s)	830, 866, 1139, 1175, 2813, 2924, 3561
MaeII	ACGT	3 cut(s)	62, 3025, 3489
MfeI	CAATTG	3 cut(s)	1790, 3000, 3627
MflI	RGATCY	4 cut(s)	308, 605, 2530, 2581
MhlI	GDGCHC	7 cut(s)	50, 702, 895, 1204, 2341, 3130, 3187
MlsI	TGGCCA	3 cut(s)	883, 1192, 2372
MluNI	TGGCCA	3 cut(s)	883, 1192, 2372
MlyI	GAGTC	4 cut(s)	811, 1120, 1879, 2615
MmeI	TCCRAC	4 cut(s)	841, 1150, 2564, 3220
Mox20I	TGGCCA	3 cut(s)	883, 1192, 2372
Mph1103I	ATGCAT	1 cut(s)	2021
MroI	TCCGGA	2 cut(s)	2083, 2734
MroXI	GAANNNNTTC	4 cut(s)	804, 1113, 2248, 2409
MscI	TGGCCA	3 cut(s)	883, 1192, 2372
MslI	CAYNNNNRTG	4 cut(s)	2024, 3002, 3167, 3518
Msp20I	TGGCCA	3 cut(s)	883, 1192, 2372
MspA1I	CMGCKG	2 cut(s)	2630, 3067
MspI	CCGG	5 cut(s)	2084, 2595, 2735, 2940, 3236
MspR9I	CCNGG	3 cut(s)	1377, 2595, 2828
MunI	CAATTG	3 cut(s)	1790, 3000, 3627
MvaI	CCWGG	2 cut(s)	1377, 2828
MvnI	CGCG	3 cut(s)	1036, 2800, 3442
MwoI	GCNNNNNNNGC	5 cut(s)	2201, 2471, 2806, 3064, 3566
NciI	CCSGG	1 cut(s)	2595
NcoI	CCATGG	1 cut(s)	2928
NheI	GCTAGC	1 cut(s)	3560
NlaIV	GGNNCC	3 cut(s)	310, 607, 2532
NmeAIII	GCCGAG	1 cut(s)	3086
NmuCI	GTSAC	9 cut(s)	245, 542, 940, 1249, 1702, 1861, 1967, 2378, 3004
NsiI	ATGCAT	1 cut(s)	2021
NspV	TTCGAA	1 cut(s)	2479
OliI	CACNNNNGTG	2 cut(s)	3002, 3518
PagI	TCATGA	3 cut(s)	895, 1204, 2905
PaqCI	CACCTGC	1 cut(s)	518
PciSI	GCTCTTC	1 cut(s)	2481
PdmI	GAANNNNTTC	4 cut(s)	804, 1113, 2248, 2409
PfeI	GAWTC	9 cut(s)	1460, 2057, 2087, 2517, 2701, 2752, 3341, 3368, 3649
PflMI	CCANNNNNTGG	1 cut(s)	2546
PkrI	GCNGC	9 cut(s)	154, 157, 214, 277, 574, 1851, 1930, 2109, 3634
PleI	GAGTC	4 cut(s)	811, 1120, 1878, 2614
PpsI	GAGTC	4 cut(s)	811, 1120, 1878, 2614
PshBI	ATTAAT	3 cut(s)	453, 750, 1059
Psp124BI	GAGCTC	2 cut(s)	895, 1204
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	1375, 2826
PspEI	GGTNACC	1 cut(s)	1561
PspFI	CCCAGC	1 cut(s)	2896
PspGI	CCWGG	2 cut(s)	1375, 2826
PspN4I	GGNNCC	3 cut(s)	310, 607, 2532
PspPI	GGNCC	4 cut(s)	2732, 2844, 3362, 3379
PstI	CTGCAG	1 cut(s)	1420
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	4 cut(s)	308, 605, 2530, 2581
PvuII	CAGCTG	2 cut(s)	2630, 3067
RsaI	GTAC	6 cut(s)	145, 169, 237, 534, 1389, 1413
RsaNI	GTAC	6 cut(s)	144, 168, 236, 533, 1388, 1412
RseI	CAYNNNNRTG	4 cut(s)	2024, 3002, 3167, 3518
SacI	GAGCTC	2 cut(s)	895, 1204
SapI	GCTCTTC	1 cut(s)	2481
SatI	GCNGC	9 cut(s)	153, 156, 213, 276, 573, 1850, 1929, 2108, 3633
Sau96I	GGNCC	4 cut(s)	2732, 2844, 3362, 3379
SchI	GAGTC	4 cut(s)	811, 1120, 1879, 2615
ScrFI	CCNGG	3 cut(s)	1377, 2595, 2828
SduI	GDGCHC	7 cut(s)	50, 702, 895, 1204, 2341, 3130, 3187
SexAI	ACCWGGT	1 cut(s)	1375
SfaNI	GCATC	5 cut(s)	1771, 2435, 2446, 2881, 3612
SfcI	CTRYAG	3 cut(s)	971, 1280, 1416
SfuI	TTCGAA	1 cut(s)	2479
SinI	GGWCC	4 cut(s)	2732, 2844, 3362, 3379
SmiMI	CAYNNNNRTG	4 cut(s)	2024, 3002, 3167, 3518
SmlI	CTYRAG	1 cut(s)	2839
SmoI	CTYRAG	1 cut(s)	2839
SsiI	CCGC	4 cut(s)	155, 275, 572, 3233
SspI	AATATT	5 cut(s)	2118, 2665, 3079, 3283, 3348
SspMI	CTAG	7 cut(s)	830, 866, 1139, 1175, 2813, 2924, 3561
SstI	GAGCTC	2 cut(s)	895, 1204
StyD4I	CCNGG	3 cut(s)	1375, 2593, 2826
StyI	CCWWGG	4 cut(s)	829, 1138, 2491, 2928
TaiI	ACGT	3 cut(s)	65, 3028, 3492
TaqI	TCGA	5 cut(s)	430, 727, 1738, 2479, 3540
TatI	WGTACW	3 cut(s)	235, 532, 1387
TauI	GCSGC	3 cut(s)	158, 278, 575
TfiI	GAWTC	9 cut(s)	1460, 2057, 2087, 2517, 2701, 2752, 3341, 3368, 3649
TseFI	GTSAC	9 cut(s)	245, 542, 940, 1249, 1702, 1861, 1967, 2378, 3004
TseI	GCWGC	6 cut(s)	152, 212, 1849, 1928, 2107, 3632
Tsp45I	GTSAC	9 cut(s)	245, 542, 940, 1249, 1702, 1861, 1967, 2378, 3004
Van91I	CCANNNNNTGG	1 cut(s)	2546
VpaK11BI	GGWCC	4 cut(s)	2732, 2844, 3362, 3379
VspI	ATTAAT	3 cut(s)	453, 750, 1059
XagI	CCTNNNNNAGG	1 cut(s)	2322
XapI	RAATTY	6 cut(s)	344, 511, 641, 2784, 3050, 3253
XbaI	TCTAGA	1 cut(s)	2812
XmaJI	CCTAGG	2 cut(s)	829, 1138
XmnI	GAANNNNTTC	4 cut(s)	804, 1113, 2248, 2409
XspI	CTAG	7 cut(s)	830, 866, 1139, 1175, 2813, 2924, 3561
Zsp2I	ATGCAT	1 cut(s)	2021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.