Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001501.1

Orthogroup ID

OG0008267

Physical Location & Seq

Genomic Coordinates Forward (+)

28842 .. 41583

Gene Structure 12742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

atggacttcgacgagtacgattacctggagaagaccgtgcaggagaacgacgaccgtgactcgaagaagaaggcgaagaaggaagccaccgagaagagctacaggaagagagaggtagacgacgacgtttcggccgacgaggataggaagagcagcaagaggtccagaggcggcgagcacgagaatggccgcgataaggaaaaggatagggatcggcaccaccggagcagcggcggtgggagagacagggacagagacggcgagagggaccgcgatcgtgatcgcggcggcgagcgagagagggagaggagcagtagggagaaggagaaggagagagagaggagggatagggataaggagaaggagaaggagagagagaaagagaaggagaaggaaagagagaggagggagaggagagagagggatgatagagagagaaaagagaaggatgagaaggagaggtctcggaggagtgtgagtcggtcggatcgggaagagaaggagaggtcccggaggagtgtgagccggtccgatagggaagagaaggagaggtctcggaggagtaggagccacactgatcgtgatagggagagggaagttagggaaaaggaacgagacttcgagatgaatgagagcaggaggtttaaagacaaaaaagaaatggtggagcctgaagctgatccagaaagagatcagagaactgtttttgcttaccagatgccactgaaggcgaccgagcgagatgtttatgaattcttctcaaaggcgggcaaggtgagggatgtacggctgatcatggacaggaattctagacgatcgaaaggtgttgggtatattgaattttatgatgcaatgcatgtgccgatggctatagctctctctggtcagctacttcttggacaacctgtaatggtgaaaccttcagaggcagaaaagaatcttgttcaatctactgctactggtggtaccacaggcgtagtaggaccatatggtgcagttgacaggaaactttatgtagggaacttgcattttaacatgactgagactcatcttagagagatttttgaaccatttggtccagtggagcttgtgcaacttccccttgatattgagacatcacagtgcaagggctttggctttgttcaatttgctcatctggaacatgcaaaggcagctcaaagtttgaatgggaagttggacattgctggtcgaactatcaaggtttcatccgttacagatcatgttggctcacaagagactggtgcaaaatcagcagattttgatgatgatgatgggggtggtttgtctttaaatgctcaatctagagcactgctaatgcaaaagctggaccgcacaggaactgccacaagtattgcaggttctctcggagtacctgggctaaatgggtcagcacctaatcaacgagctgttaatttgccgatgaatggtcaagccaccctttctgcaccatttcttccagcaaaagtgcctgcagtagcagaacctattggaaaccccagtgaatgtctattattgaaggatatgtttgatccagccacggagacggagccagattttgatgtagacataaaagacgacgtcgaagatgaatgttcaaaatatggtcgcgtgaagcacatttatgtggagaaaaacagtgctggatttgtgtatttgcggtttgaaactgtggaagcagcagctgcagctcaacgtgcaatgcatctgagatgcaacaggcttttgaagaaaaagaagaagaagaccaccgagagagccataaccacatatagtcagtcaggccacactttcagactctctctctctctctctctctcccaactcaacgagatggataggtaccagagggtggagaagcccaaggcagaggccacgcctataaacgagaatgagattcgcatcaccgctcaaggtagaatgaggaactatattacttacgccaccactctccttcaggacaaagggtctagtgaaattgtcctcaaggcaatgggcagagctattaataaaactgtgatgattgctgaactgatcaagagaaggattgttggcctccatcagaatacttctattggatcaactgatataactgacgtgtgggagcccctggaagaaggcctgcttcctctagagactactcggcatgtttcaatgatcacgattactttgtcaaagacagagctgaagacaacctctacaggctatcaaccccctattccggctgatcaagtgaaaccattgaatgattttgaggatgatggagagggttcacctagattccgaggcaggggacgtggtggccgaggaagaagcaggggtagagggagctacaatggagttgttgattataatggagatggttgggatggtgggcgtggctatggtggcagaggtaggggccgtgcgagaggtggttcttttaggggtcgaggacgaggttatggtcagcaaggtggatactatgattatgctgaaggtgcacctatccaaggtcgcgggctcacagggcgcggccgaggaaggggaaggggccgtgggcgtggtcgtagtactcgactggatggccaagcaccagctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005815 GO:0005856 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010556 GO:0010557 GO:0010604 GO:0015630 GO:0016070 GO:0016604 GO:0016607 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

867

Amino Acids

98.19

Weight (kDa)

9.35

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	240 - 302	2.7e-10	RNA recognition motif
RRM_1	PF00076	337 - 407	8.4e-19	RNA recognition motif
RBM39linker	PF15519	427 - 526	3e-21	linker between RRM2 and RRM3 domains in RBM39 protein
Rpp20	PF12328	576 - 728	1.9e-06	Rpp20 subunit of nuclear RNase MRP and P
Alba	PF01918	637 - 701	9.5e-18	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09880
fragaria_vesca	FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920 FvH4_1g23920
malus_domestica	MD01G1009900.v1.1 MD15G1339600.v1.1
prunus_persica	Prupe.6G161000_v2.0.a1
pyrus_communis	pycom01g03620 pycom15g29960
rosa_chinensis	RchiOBHm_Chr2g0119921
rosa_laevigata	RLG00000018502
rosa_multiflora	Rmu_sc0001501.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123990
rosa_rugosa	Rorug02G0225300 Rorug02G0225400
rosa_samantha	Rh2AG282500 Rh2BG293900 Rh2DG307700
rosa_wichuraiana	Rw2G022550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2370
AatII	GACGTC	1 cut(s)	1602
Acc36I	ACCTGC	1 cut(s)	1367
Acc65I	GGTACC	2 cut(s)	965, 1860
AccB1I	GGYRCC	3 cut(s)	216, 965, 1860
AccB7I	CCANNNNNTGG	1 cut(s)	1870
AccBSI	CCGCTC	1 cut(s)	1928
AccI	GTMKAC	2 cut(s)	117, 1584
AccII	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
AclWI	GGATC	5 cut(s)	219, 495, 674, 1544, 2104
AcoI	YGGCCR	5 cut(s)	132, 187, 2320, 2533, 2584
AcsI	RAATTY	3 cut(s)	752, 805, 839
AcuI	CTGAAG	6 cut(s)	693, 746, 906, 1958, 2225, 2514
AcyI	GRCGYC	1 cut(s)	1599
AfaI	GTAC	6 cut(s)	17, 786, 967, 1392, 1862, 2572
AfiI	CCNNNNNNNGG	7 cut(s)	196, 1445, 1870, 2239, 2308, 2510, 2542
AflIII	ACRYGT	1 cut(s)	2115
AhdI	GACNNNNNGTC	1 cut(s)	1984
AjiI	CACGTC	2 cut(s)	2116, 2315
AjnI	CCWGG	3 cut(s)	24, 1393, 2127
AjuI	GAANNNNNNNTTGG	2 cut(s)	1178, 1210
Alw21I	GWGCWC	3 cut(s)	180, 1330, 2503
Alw44I	GTGCAC	1 cut(s)	2499
AlwI	GGATC	5 cut(s)	219, 495, 674, 1544, 2104
AlwNI	CAGNNNCTG	2 cut(s)	1361, 1703
ApaLI	GTGCAC	1 cut(s)	2499
ApeKI	GCWGC	8 cut(s)	153, 228, 1172, 1697, 1700, 1703, 1706, 2597
ApoI	RAATTY	3 cut(s)	752, 805, 839
AseI	ATTAAT	1 cut(s)	2025
Asp718I	GGTACC	2 cut(s)	965, 1860
AspLEI	GCGC	1 cut(s)	2532
AspS9I	GGNCC	9 cut(s)	162, 268, 507, 528, 983, 1076, 1348, 2419, 2551
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	4 cut(s)	787, 925, 1915, 2283
AvaII	GGWCC	7 cut(s)	162, 268, 507, 528, 983, 1076, 1348
BaeGI	GKGCMC	1 cut(s)	2503
BalI	TGGCCA	1 cut(s)	2586
BanI	GGYRCC	3 cut(s)	216, 965, 1860
BanII	GRGCYC	2 cut(s)	2127, 2523
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	3 cut(s)	38, 1769, 2213
Bbv12I	GWGCWC	3 cut(s)	180, 1330, 2503
BbvI	GCAGC	8 cut(s)	165, 240, 1184, 1690, 1709, 1712, 1718, 2584
BccI	CCATC	8 cut(s)	859, 1286, 1846, 2085, 2273, 2372, 2381, 2576
BceAI	ACGGC	4 cut(s)	274, 803, 2406, 2538
BciT130I	CCWGG	3 cut(s)	26, 1395, 2129
BciVI	GTATCC	1 cut(s)	2471
BclI	TGATCA	4 cut(s)	792, 2052, 2175, 2245
BcnI	CCSGG	1 cut(s)	511
BfaI	CTAG	5 cut(s)	810, 1323, 1989, 2150, 2295
BfmI	CTRYAG	5 cut(s)	100, 870, 1491, 1704, 2217
BfuAI	ACCTGC	1 cut(s)	1367
BfuI	GTATCC	1 cut(s)	2471
BmcAI	AGTACT	1 cut(s)	2572
Bme1390I	CCNGG	4 cut(s)	26, 511, 1395, 2129
Bme18I	GGWCC	7 cut(s)	162, 268, 507, 528, 983, 1076, 1348
BmeRI	GACNNNNNGTC	1 cut(s)	1984
BmgBI	CACGTC	2 cut(s)	2116, 2315
BmgT120I	GGNCC	9 cut(s)	162, 268, 507, 528, 983, 1076, 1348, 2419, 2551
BmrFI	CCNGG	4 cut(s)	26, 511, 1395, 2129
BmrI	ACTGGG	1 cut(s)	1512
BmsI	GCATC	5 cut(s)	708, 838, 1721, 1732, 1929
BmuI	ACTGGG	1 cut(s)	1512
BpiI	GAAGAC	3 cut(s)	38, 1769, 2213
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	1914, 1988
BpuMI	CCSGG	1 cut(s)	511
BsaBI	GATNNNNATC	3 cut(s)	210, 279, 1919
BsaHI	GRCGYC	1 cut(s)	1599
BsaI	GGTCTC	2 cut(s)	468, 558
BsaJI	CCNNGG	9 cut(s)	1394, 1557, 1881, 2127, 2302, 2323, 2509, 2536, 2554
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	7 cut(s)	196, 1445, 1870, 2239, 2308, 2510, 2542
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	5 cut(s)	964, 1079, 1264, 1518, 2583
Bse3DI	GCAATG	4 cut(s)	858, 1200, 1725, 2016
Bse8I	GATNNNNATC	3 cut(s)	210, 279, 1919
BseBI	CCWGG	3 cut(s)	26, 1395, 2129
BseDI	CCNNGG	9 cut(s)	1394, 1557, 1881, 2127, 2302, 2323, 2509, 2536, 2554
BseGI	GGATG	7 cut(s)	430, 454, 787, 1226, 2281, 2392, 2587
BseJI	GATNNNNATC	3 cut(s)	210, 279, 1919
BseLI	CCNNNNNNNGG	7 cut(s)	196, 1445, 1870, 2239, 2308, 2510, 2542
BseMI	GCAATG	4 cut(s)	858, 1200, 1725, 2016
BseMII	CTCAG	2 cut(s)	1032, 1718
BseNI	ACTGG	5 cut(s)	964, 1079, 1264, 1518, 2583
BseRI	GAGGAG	7 cut(s)	322, 355, 418, 427, 484, 529, 574
BseSI	GKGCMC	1 cut(s)	2503
BseX3I	CGGCCG	2 cut(s)	132, 2533
BseXI	GCAGC	8 cut(s)	165, 240, 1184, 1690, 1709, 1712, 1718, 2584
BsgI	GTGCAG	3 cut(s)	59, 1014, 1449
Bsh1236I	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
Bsh1285I	CGRYCG	7 cut(s)	55, 135, 277, 485, 735, 818, 2536
BshNI	GGYRCC	3 cut(s)	216, 965, 1860
BsiEI	CGRYCG	7 cut(s)	55, 135, 277, 485, 735, 818, 2536
BsiHKAI	GWGCWC	3 cut(s)	180, 1330, 2503
BsiSI	CCGG	4 cut(s)	223, 511, 526, 2240
BslFI	GGGAC	4 cut(s)	263, 281, 493, 2325
BslI	CCNNNNNNNGG	7 cut(s)	196, 1445, 1870, 2239, 2308, 2510, 2542
BsmBI	CGTCTC	2 cut(s)	249, 1556
BsmFI	GGGAC	4 cut(s)	263, 281, 493, 2325
Bso31I	GGTCTC	2 cut(s)	468, 558
Bsp1286I	GDGCHC	5 cut(s)	180, 1330, 2127, 2503, 2523
BspCNI	CTCAG	2 cut(s)	1033, 1719
BspFNI	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
BspMAI	CTGCAG	2 cut(s)	1495, 1708
BspMI	ACCTGC	1 cut(s)	1367
BspPI	GGATC	5 cut(s)	219, 495, 674, 1544, 2104
BspQI	GCTCTTC	2 cut(s)	89, 143
BspT107I	GGYRCC	3 cut(s)	216, 965, 1860
BspTNI	GGTCTC	2 cut(s)	468, 558
BsrBI	CCGCTC	1 cut(s)	1928
BsrDI	GCAATG	4 cut(s)	858, 1200, 1725, 2016
BsrFI	RCCGGY	1 cut(s)	525
BsrI	ACTGG	5 cut(s)	964, 1079, 1264, 1518, 2583
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	9 cut(s)	1394, 1557, 1881, 2127, 2302, 2323, 2509, 2536, 2554
BssNI	GRCGYC	1 cut(s)	1599
BssSI	CACGAG	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	1881, 2509
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	3 cut(s)	26, 1395, 2129
Bst4CI	ACNGT	7 cut(s)	37, 56, 703, 1122, 1658, 1690, 2035
Bst6I	CTCTTC	5 cut(s)	89, 101, 143, 489, 534
BstACI	GRCGYC	1 cut(s)	1599
BstAPI	GCANNNNNTGC	2 cut(s)	1703, 2597
BstC8I	GCNNGC	6 cut(s)	176, 293, 769, 1491, 2141, 2519
BstDEI	CTNAG	3 cut(s)	1041, 1052, 1727
BstDSI	CCRYGG	2 cut(s)	1557, 2554
BstENI	CCTNNNNNAGG	1 cut(s)	2508
BstF5I	GGATG	7 cut(s)	430, 454, 787, 1226, 2281, 2392, 2587
BstFNI	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
BstHHI	GCGC	1 cut(s)	2532
BstMCI	CGRYCG	7 cut(s)	55, 135, 277, 485, 735, 818, 2536
BstMWI	GCNNNNNNNGC	9 cut(s)	1172, 1271, 1703, 1706, 1715, 2406, 2498, 2527, 2597
BstNI	CCWGG	3 cut(s)	26, 1395, 2129
BstNSI	RCATGY	3 cut(s)	860, 1166, 2168
BstSCI	CCNGG	4 cut(s)	24, 509, 1393, 2127
BstSFI	CTRYAG	5 cut(s)	100, 870, 1491, 1704, 2217
BstSLI	GKGCMC	1 cut(s)	2503
BstUI	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
BstV1I	GCAGC	8 cut(s)	165, 240, 1184, 1690, 1709, 1712, 1718, 2584
BstV2I	GAAGAC	3 cut(s)	38, 1769, 2213
BstZI	CGGCCG	2 cut(s)	132, 2533
BsuI	GTATCC	1 cut(s)	2471
BtgI	CCRYGG	2 cut(s)	1557, 2554
BtrI	CACGTC	2 cut(s)	2116, 2315
BtsCI	GGATG	7 cut(s)	430, 454, 787, 1226, 2281, 2392, 2587
BtsI	GCAGTG	1 cut(s)	1328
BtsIMutI	CAGTG	7 cut(s)	573, 722, 1086, 1127, 1328, 1525, 1663
BveI	ACCTGC	1 cut(s)	1367
Cac8I	GCNNGC	6 cut(s)	176, 293, 769, 1491, 2141, 2519
CaiI	CAGNNNCTG	2 cut(s)	1361, 1703
CfoI	GCGC	1 cut(s)	2532
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	9 cut(s)	162, 268, 507, 528, 983, 1076, 1348, 2419, 2551
CpoI	CGGWCCG	1 cut(s)	528
Csp6I	GTAC	6 cut(s)	16, 785, 966, 1391, 1861, 2571
CspCI	CAANNNNNGTGG	2 cut(s)	1354, 1389
CspI	CGGWCCG	1 cut(s)	528
CviAII	CATG	6 cut(s)	796, 857, 1036, 1163, 1241, 2165
CviQI	GTAC	6 cut(s)	16, 785, 966, 1391, 1861, 2571
DdeI	CTNAG	3 cut(s)	1041, 1052, 1727
DraI	TTTAAA	2 cut(s)	646, 1311
DriI	GACNNNNNGTC	1 cut(s)	1984
EaeI	YGGCCR	5 cut(s)	132, 187, 2320, 2533, 2584
EagI	CGGCCG	2 cut(s)	132, 2533
Eam1104I	CTCTTC	5 cut(s)	89, 101, 143, 489, 534
Eam1105I	GACNNNNNGTC	1 cut(s)	1984
EarI	CTCTTC	5 cut(s)	89, 101, 143, 489, 534
EclXI	CGGCCG	2 cut(s)	132, 2533
Eco130I	CCWWGG	2 cut(s)	1881, 2509
Eco147I	AGGCCT	1 cut(s)	2139
Eco24I	GRGCYC	2 cut(s)	2127, 2523
Eco31I	GGTCTC	2 cut(s)	468, 558
Eco47I	GGWCC	7 cut(s)	162, 268, 507, 528, 983, 1076, 1348
Eco52I	CGGCCG	2 cut(s)	132, 2533
Eco57I	CTGAAG	6 cut(s)	693, 746, 906, 1958, 2225, 2514
EcoNI	CCTNNNNNAGG	1 cut(s)	2508
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRI	GAATTC	2 cut(s)	752, 805
EcoRII	CCWGG	3 cut(s)	24, 1393, 2127
EcoT14I	CCWWGG	2 cut(s)	1881, 2509
EcoT22I	ATGCAT	2 cut(s)	858, 1725
EcoT38I	GRGCYC	2 cut(s)	2127, 2523
ErhI	CCWWGG	2 cut(s)	1881, 2509
Esp3I	CGTCTC	2 cut(s)	249, 1556
FaeI	CATG	6 cut(s)	799, 860, 1039, 1166, 1244, 2168
FalI	AAGNNNNNCTT	4 cut(s)	1443, 1475, 2127, 2159
FaqI	GGGAC	4 cut(s)	263, 281, 493, 2325
FatI	CATG	6 cut(s)	795, 856, 1035, 1162, 1240, 2164
FauI	CCCGC	2 cut(s)	760, 2510
FauNDI	CATATG	1 cut(s)	988
FbaI	TGATCA	4 cut(s)	792, 2052, 2175, 2245
FblI	GTMKAC	2 cut(s)	117, 1584
FokI	GGATG	7 cut(s)	437, 461, 794, 1213, 2288, 2399, 2594
FriOI	GRGCYC	2 cut(s)	2127, 2523
FspBI	CTAG	5 cut(s)	810, 1323, 1989, 2150, 2295
GlaI	GCGC	1 cut(s)	2531
GsuI	CTGGAG	1 cut(s)	47
HapII	CCGG	4 cut(s)	223, 511, 526, 2240
HhaI	GCGC	1 cut(s)	2532
Hin1I	GRCGYC	1 cut(s)	1599
Hin1II	CATG	6 cut(s)	799, 860, 1039, 1166, 1244, 2168
Hin6I	GCGC	1 cut(s)	2530
HinP1I	GCGC	1 cut(s)	2530
HincII	GTYRAC	1 cut(s)	1000
HindII	GTYRAC	1 cut(s)	1000
HinfI	GANTC	7 cut(s)	59, 478, 937, 1045, 1815, 1915, 2298
HpaII	CCGG	4 cut(s)	223, 511, 526, 2240
HphI	GGTGA	4 cut(s)	787, 925, 1915, 2283
Hpy166II	GTNNAC	5 cut(s)	118, 1000, 1585, 2291, 2501
Hpy8I	GTNNAC	5 cut(s)	118, 1000, 1585, 2291, 2501
Hpy99I	CGWCG	7 cut(s)	14, 53, 125, 128, 140, 1601, 1604
HpyCH4III	ACNGT	7 cut(s)	37, 56, 703, 1122, 1658, 1690, 2035
HpyCH4IV	ACGT	5 cut(s)	126, 1599, 1714, 2115, 2314
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1172, 1271, 1703, 1706, 1715, 2406, 2498, 2527, 2597
HpyF3I	CTNAG	3 cut(s)	1041, 1052, 1727
HpySE526I	ACGT	5 cut(s)	126, 1599, 1714, 2115, 2314
Hsp92I	GRCGYC	1 cut(s)	1599
Hsp92II	CATG	6 cut(s)	799, 860, 1039, 1166, 1244, 2168
HspAI	GCGC	1 cut(s)	2530
KpnI	GGTACC	2 cut(s)	969, 1864
Ksp22I	TGATCA	4 cut(s)	792, 2052, 2175, 2245
LguI	GCTCTTC	2 cut(s)	89, 143
LmnI	GCTCC	8 cut(s)	225, 309, 567, 667, 1084, 1567, 2122, 2346
Lsp1109I	GCAGC	8 cut(s)	165, 240, 1184, 1690, 1709, 1712, 1718, 2584
LweI	GCATC	5 cut(s)	708, 838, 1721, 1732, 1929
MaeI	CTAG	5 cut(s)	810, 1323, 1989, 2150, 2295
MaeII	ACGT	5 cut(s)	126, 1599, 1714, 2115, 2314
MaeIII	GTNAC	2 cut(s)	56, 1231
MbiI	CCGCTC	1 cut(s)	1928
MhlI	GDGCHC	5 cut(s)	180, 1330, 2127, 2503, 2523
MlsI	TGGCCA	1 cut(s)	2586
MluCI	AATT	6 cut(s)	752, 805, 839, 1145, 1432, 1995
MluNI	TGGCCA	1 cut(s)	2586
MlyI	GAGTC	4 cut(s)	53, 487, 1039, 1809
MmeI	TCCRAC	2 cut(s)	465, 1176
Mox20I	TGGCCA	1 cut(s)	2586
Mph1103I	ATGCAT	2 cut(s)	858, 1725
MscI	TGGCCA	1 cut(s)	2586
MseI	TTAA	5 cut(s)	645, 1032, 1310, 1431, 2025
MslI	CAYNNNNRTG	4 cut(s)	183, 1120, 1641, 1643
Msp20I	TGGCCA	1 cut(s)	2586
MspA1I	CMGCKG	3 cut(s)	231, 1703, 2597
MspI	CCGG	4 cut(s)	223, 511, 526, 2240
MspR9I	CCNGG	4 cut(s)	26, 511, 1395, 2129
MvaI	CCWGG	3 cut(s)	26, 1395, 2129
MvnI	CGCG	6 cut(s)	192, 273, 285, 1629, 2517, 2532
MwoI	GCNNNNNNNGC	9 cut(s)	1172, 1271, 1703, 1706, 1715, 2406, 2498, 2527, 2597
NciI	CCSGG	1 cut(s)	511
NdeI	CATATG	1 cut(s)	988
NlaIII	CATG	6 cut(s)	799, 860, 1039, 1166, 1244, 2168
NmeAIII	GCCGAG	3 cut(s)	2140, 2348, 2561
NmuCI	GTSAC	1 cut(s)	56
NsiI	ATGCAT	2 cut(s)	858, 1725
NspI	RCATGY	3 cut(s)	860, 1166, 2168
PceI	AGGCCT	1 cut(s)	2139
PciSI	GCTCTTC	2 cut(s)	89, 143
PcsI	WCGNNNNNNNCGW	4 cut(s)	15, 132, 2320, 2572
PfeI	GAWTC	3 cut(s)	937, 1915, 2298
PflFI	GACNNNGTC	1 cut(s)	1598
PflMI	CCANNNNNTGG	1 cut(s)	1870
PfoI	TCCNGGA	1 cut(s)	509
Ple19I	CGATCG	2 cut(s)	277, 818
PleI	GAGTC	4 cut(s)	53, 486, 1039, 1809
PpsI	GAGTC	4 cut(s)	53, 486, 1039, 1809
PpuMI	RGGWCCY	1 cut(s)	507
PshBI	ATTAAT	1 cut(s)	2025
PsiI	TTATAA	1 cut(s)	2370
Psp5II	RGGWCCY	1 cut(s)	507
Psp6I	CCWGG	3 cut(s)	24, 1393, 2127
PspGI	CCWGG	3 cut(s)	24, 1393, 2127
PspPI	GGNCC	9 cut(s)	162, 268, 507, 528, 983, 1076, 1348, 2419, 2551
PspPPI	RGGWCCY	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	1363, 1395
PstI	CTGCAG	2 cut(s)	1495, 1708
PstNI	CAGNNNCTG	2 cut(s)	1361, 1703
PsyI	GACNNNGTC	1 cut(s)	1598
PvuI	CGATCG	2 cut(s)	277, 818
PvuII	CAGCTG	2 cut(s)	1703, 2597
RsaI	GTAC	6 cut(s)	17, 786, 967, 1392, 1862, 2572
RsaNI	GTAC	6 cut(s)	16, 785, 966, 1391, 1861, 2571
RseI	CAYNNNNRTG	4 cut(s)	183, 1120, 1641, 1643
Rsr2I	CGGWCCG	1 cut(s)	528
RsrII	CGGWCCG	1 cut(s)	528
SapI	GCTCTTC	2 cut(s)	89, 143
SaqAI	TTAA	5 cut(s)	645, 1032, 1310, 1431, 2025
Sau96I	GGNCC	9 cut(s)	162, 268, 507, 528, 983, 1076, 1348, 2419, 2551
ScaI	AGTACT	1 cut(s)	2572
SchI	GAGTC	4 cut(s)	53, 487, 1039, 1809
ScrFI	CCNGG	4 cut(s)	26, 511, 1395, 2129
SduI	GDGCHC	5 cut(s)	180, 1330, 2127, 2503, 2523
SfaNI	GCATC	5 cut(s)	708, 838, 1721, 1732, 1929
SfcI	CTRYAG	5 cut(s)	100, 870, 1491, 1704, 2217
SinI	GGWCC	7 cut(s)	162, 268, 507, 528, 983, 1076, 1348
SmiMI	CAYNNNNRTG	4 cut(s)	183, 1120, 1641, 1643
SmlI	CTYRAG	2 cut(s)	1929, 2003
SmoI	CTYRAG	2 cut(s)	1929, 2003
Sse9I	AATT	6 cut(s)	752, 805, 839, 1145, 1432, 1995
SseBI	AGGCCT	1 cut(s)	2139
SspMI	CTAG	5 cut(s)	810, 1323, 1989, 2150, 2295
StuI	AGGCCT	1 cut(s)	2139
StyD4I	CCNGG	4 cut(s)	24, 509, 1393, 2127
StyI	CCWWGG	2 cut(s)	1881, 2509
TaaI	ACNGT	7 cut(s)	37, 56, 703, 1122, 1658, 1690, 2035
TaiI	ACGT	5 cut(s)	129, 1602, 1717, 2118, 2317
TaqI	TCGA	8 cut(s)	9, 62, 621, 818, 1210, 1602, 2449, 2575
TaqII	GACCGA	2 cut(s)	471, 749
TasI	AATT	6 cut(s)	752, 805, 839, 1145, 1432, 1995
TatI	WGTACW	1 cut(s)	2570
TauI	GCSGC	6 cut(s)	174, 192, 234, 288, 291, 2535
TfiI	GAWTC	3 cut(s)	937, 1915, 2298
Tru1I	TTAA	5 cut(s)	645, 1032, 1310, 1431, 2025
Tru9I	TTAA	5 cut(s)	645, 1032, 1310, 1431, 2025
TscAI	CASTG	7 cut(s)	580, 729, 1086, 1127, 1335, 1525, 1663
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	8 cut(s)	153, 228, 1172, 1697, 1700, 1703, 1706, 2597
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	5 cut(s)	641, 765, 1215, 1457, 1623
TspGWI	ACGGA	3 cut(s)	1219, 1574, 1580
TspRI	CASTG	7 cut(s)	580, 729, 1086, 1127, 1335, 1525, 1663
Tth111I	GACNNNGTC	1 cut(s)	1598
Van91I	CCANNNNNTGG	1 cut(s)	1870
VneI	GTGCAC	1 cut(s)	2499
VpaK11BI	GGWCC	7 cut(s)	162, 268, 507, 528, 983, 1076, 1348
VspI	ATTAAT	1 cut(s)	2025
XagI	CCTNNNNNAGG	1 cut(s)	2508
XapI	RAATTY	3 cut(s)	752, 805, 839
XbaI	TCTAGA	3 cut(s)	809, 1322, 2149
XceI	RCATGY	3 cut(s)	860, 1166, 2168
XmiI	GTMKAC	2 cut(s)	117, 1584
XspI	CTAG	5 cut(s)	810, 1323, 1989, 2150, 2295
ZraI	GACGTC	1 cut(s)	1600
ZrmI	AGTACT	1 cut(s)	2572
Zsp2I	ATGCAT	2 cut(s)	858, 1725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.