Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0017246

Physical Location & Seq

Genomic Coordinates Forward (+)

117191 .. 119396

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atgacacaaccaccagattcaacagaagcagcagaggaagaaaggcagcaagtagaagaagtagaagaggcagaagaatcaaaacatggcaaagggacatggaagcacgcagcgtttcatgtggccacaacgattgccacacctgctgcctatgctcctctgccttttgctctcgcttctcttggttggcctctcggggtaagcagcttggtaggtgcaacactggccacatggtattctagtctgcttatcgcttctctgtggaagtggaatgggaagaaacatgttacctatcgccaccttgcccaaagcattttcgctgggagtagccttaaggctgtttacaagtattatcacaaggatggtgacttaactctgcaacattttgttattttctttggggtctttgagctctttctctctcagctccctgatatacactccttaagatgggtaaatgccttgtgcactttcagcacaattggctttgctgctacaaccattggtgtcacaatttataatgggaaaaagattgacagaaaatcaatcagttacggtttagatggaagctcatcatccaaagtctttagagccttcaatgctctcggagcaattgccttttcctttggagatgcaatgcttccagagatacagaacactgtgagagaacctgcaaagaaaaatgtgtacaaaggtgtatcagcagcttatggtatcatagtgttgagttactggcaattggccttcactgggccaacatatgcctacttcgaggagagactgttgtctaatgaaactgccacaagtcgttcctcactaagaaacaagctagttcgtcttgtttgtacctccatgtatatgctacttattacactagttgcagcagccatgccattctttggggattttgtggcaatatgcggagcaattgggttcacaccactggactttgtgttccctgctatggcatatctaaaagctagaagaagacggcaccaaaacaccaaaatgtatctgtctttgctacttcttaactttgctatagtggtttggttctcggctgttgcagtgttcggttgcattggggcagtcaagtttattgtggaagatgtcaagacttataagttctttcatgatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

380

Amino Acids

42.24

Weight (kDa)

9.14

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22320
malus_domestica	MD10G1191600.v1.1
prunus_persica	Prupe.8G230900_v2.0.a1
pyrus_communis	pycom10g16520
rosa_chinensis	RchiOBHm_Chr6g0289321
rosa_laevigata	RLG00000012313
rosa_multiflora	Rmu_sc0001527.1_g000025 Rmu_sc0005115.1_g000002
rosa_roxburghii	Rroxscaffold_7G00179340
rosa_rugosa	Rorug06G0202800 Rorug06G0203000
rosa_samantha	Rh6AG313600
rosa_wichuraiana	Rw6G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	519, 1122
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	2 cut(s)	151, 679
AccB1I	GGYRCC	1 cut(s)	993
AccB7I	CCANNNNNTGG	1 cut(s)	899
AciI	CCGC	1 cut(s)	921
AcoI	YGGCCR	2 cut(s)	123, 225
AfaI	GTAC	2 cut(s)	689, 847
AfiI	CCNNNNNNNGG	4 cut(s)	450, 750, 899, 964
AflII	CTTAAG	2 cut(s)	332, 445
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	21, 598
AhlI	ACTAGT	1 cut(s)	874
AloI	GAACNNNNNNTCC	2 cut(s)	938, 970
AluBI	AGCT	7 cut(s)	207, 412, 427, 570, 707, 829, 980
AluI	AGCT	7 cut(s)	207, 412, 427, 570, 707, 829, 980
Alw21I	GWGCWC	2 cut(s)	414, 470
Alw26I	GTCTC	1 cut(s)	772
Alw44I	GTGCAC	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	123, 188, 225, 741, 752
ApaLI	GTGCAC	1 cut(s)	466
ApeKI	GCWGC	9 cut(s)	29, 46, 110, 146, 204, 491, 704, 881, 884
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	470
BalI	TGGCCA	2 cut(s)	125, 227
BanI	GGYRCC	1 cut(s)	993
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	994
Bbv12I	GWGCWC	2 cut(s)	414, 470
BbvI	GCAGC	9 cut(s)	41, 58, 122, 133, 216, 478, 716, 893, 896
BccI	CCATC	3 cut(s)	356, 444, 557
BceAI	ACGGC	1 cut(s)	1007
BcoDI	GTCTC	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	4 cut(s)	240, 830, 875, 981
BfmI	CTRYAG	1 cut(s)	1041
BfrI	CTTAAG	2 cut(s)	332, 445
BfuAI	ACCTGC	2 cut(s)	151, 679
BisI	GCNGC	9 cut(s)	30, 47, 111, 147, 205, 492, 705, 882, 885
BlsI	GCNGC	9 cut(s)	31, 48, 112, 148, 206, 493, 706, 883, 886
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	995
BmrI	ACTGGG	1 cut(s)	759
BmsI	GCATC	1 cut(s)	622
BmuI	ACTGGG	1 cut(s)	759
BoxI	GACNNNNGTC	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	994
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	450, 750, 899, 964
Bse1I	ACTGG	4 cut(s)	228, 737, 754, 948
Bse3DI	GCAATG	1 cut(s)	642
BseGI	GGATG	2 cut(s)	367, 575
BseLI	CCNNNNNNNGG	4 cut(s)	450, 750, 899, 964
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	4 cut(s)	228, 737, 754, 948
BseRI	GAGGAG	2 cut(s)	147, 788
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	9 cut(s)	41, 58, 122, 133, 216, 478, 716, 893, 896
BseYI	CCCAGC	1 cut(s)	320
BshFI	GGCC	5 cut(s)	125, 190, 227, 743, 754
BshNI	GGYRCC	1 cut(s)	993
BsiHKAI	GWGCWC	2 cut(s)	414, 470
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	4 cut(s)	450, 750, 899, 964
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	5 cut(s)	125, 190, 227, 743, 754
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	414, 470
Bsp1407I	TGTACA	1 cut(s)	687
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	5 cut(s)	125, 190, 227, 743, 754
BspCNI	CTCAG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	1132
BspLI	GGNNCC	1 cut(s)	995
BspMI	ACCTGC	2 cut(s)	151, 679
BspT107I	GGYRCC	1 cut(s)	993
BspTI	CTTAAG	2 cut(s)	332, 445
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	4 cut(s)	228, 737, 754, 948
Bst4CI	ACNGT	3 cut(s)	557, 661, 783
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	332, 445
BstAUI	TGTACA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	423, 818
BstF5I	GGATG	2 cut(s)	367, 575
BstMAI	GTCTC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 474, 483, 599, 608
BstNSI	RCATGY	1 cut(s)	287
BstPAI	GACNNNNGTC	1 cut(s)	784
BstSFI	CTRYAG	1 cut(s)	1041
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	9 cut(s)	41, 58, 122, 133, 216, 478, 716, 893, 896
BstV2I	GAAGAC	1 cut(s)	994
BsuRI	GGCC	5 cut(s)	125, 190, 227, 743, 754
BtsCI	GGATG	2 cut(s)	367, 575
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	5 cut(s)	221, 657, 747, 941, 1074
BveI	ACCTGC	2 cut(s)	151, 679
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	1132
Cfr13I	GGNCC	1 cut(s)	752
Csp6I	GTAC	2 cut(s)	688, 846
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	8 cut(s)	86, 99, 119, 231, 284, 853, 889, 1133
CviQI	GTAC	2 cut(s)	688, 846
DdeI	CTNAG	2 cut(s)	423, 818
EaeI	YGGCCR	2 cut(s)	123, 225
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	8 cut(s)	89, 102, 122, 234, 287, 856, 892, 1136
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	8 cut(s)	85, 98, 118, 230, 283, 852, 888, 1132
FauNDI	CATATG	1 cut(s)	760
Fnu4HI	GCNGC	9 cut(s)	30, 47, 111, 147, 205, 492, 705, 882, 885
FokI	GGATG	2 cut(s)	374, 562
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	9 cut(s)	30, 47, 111, 147, 205, 492, 705, 882, 885
FspBI	CTAG	4 cut(s)	240, 830, 875, 981
GluI	GCNGC	9 cut(s)	30, 47, 111, 147, 205, 492, 705, 882, 885
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	125, 190, 227, 743, 754
Hin1II	CATG	8 cut(s)	89, 102, 122, 234, 287, 856, 892, 1136
HinfI	GANTC	2 cut(s)	17, 77
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	4 cut(s)	343, 468, 688, 936
Hpy188I	TCNGA	1 cut(s)	608
Hpy188III	TCNNGA	3 cut(s)	644, 1114, 1133
Hpy8I	GTNNAC	4 cut(s)	343, 468, 688, 936
HpyAV	CCTTC	2 cut(s)	604, 754
HpyCH4III	ACNGT	3 cut(s)	557, 661, 783
HpyCH4V	TGCA	8 cut(s)	218, 379, 468, 635, 674, 881, 1067, 1080
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 474, 483, 599, 608
HpyF3I	CTNAG	2 cut(s)	423, 818
Hsp92II	CATG	8 cut(s)	89, 102, 122, 234, 287, 856, 892, 1136
LmnI	GCTCC	4 cut(s)	160, 432, 608, 923
Lsp1109I	GCAGC	9 cut(s)	41, 58, 122, 133, 216, 478, 716, 893, 896
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	4 cut(s)	240, 830, 875, 981
MaeIII	GTNAC	5 cut(s)	286, 365, 508, 551, 728
MboII	GAAGA	8 cut(s)	50, 68, 77, 86, 289, 996, 999, 1118
MfeI	CAATTG	4 cut(s)	480, 612, 737, 927
MhlI	GDGCHC	2 cut(s)	414, 470
MlsI	TGGCCA	2 cut(s)	125, 227
MluCI	AATT	5 cut(s)	480, 513, 612, 737, 927
MluNI	TGGCCA	2 cut(s)	125, 227
MnlI	CCTC	7 cut(s)	28, 61, 168, 201, 766, 823, 859
Mox20I	TGGCCA	2 cut(s)	125, 227
MscI	TGGCCA	2 cut(s)	125, 227
MseI	TTAA	4 cut(s)	333, 371, 446, 1032
MslI	CAYNNNNRTG	3 cut(s)	360, 857, 1007
Msp20I	TGGCCA	2 cut(s)	125, 227
MspCI	CTTAAG	2 cut(s)	332, 445
MunI	CAATTG	4 cut(s)	480, 612, 737, 927
MwoI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 474, 483, 599, 608
NdeI	CATATG	1 cut(s)	760
NlaIII	CATG	8 cut(s)	89, 102, 122, 234, 287, 856, 892, 1136
NlaIV	GGNNCC	1 cut(s)	995
NmeAIII	GCCGAG	1 cut(s)	1037
NmuCI	GTSAC	2 cut(s)	365, 508
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	1132
PaqCI	CACCTGC	1 cut(s)	151
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	17, 77
PflMI	CCANNNNNTGG	1 cut(s)	899
PkrI	GCNGC	9 cut(s)	31, 48, 112, 148, 206, 493, 706, 883, 886
PscI	ACATGT	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	784
PsiI	TTATAA	2 cut(s)	519, 1122
Psp124BI	GAGCTC	1 cut(s)	414
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	995
PspPI	GGNCC	1 cut(s)	752
RsaI	GTAC	2 cut(s)	689, 847
RsaNI	GTAC	2 cut(s)	688, 846
RseI	CAYNNNNRTG	3 cut(s)	360, 857, 1007
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	4 cut(s)	333, 371, 446, 1032
SatI	GCNGC	9 cut(s)	30, 47, 111, 147, 205, 492, 705, 882, 885
Sau96I	GGNCC	1 cut(s)	752
SduI	GDGCHC	2 cut(s)	414, 470
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	3 cut(s)	360, 857, 1007
SmlI	CTYRAG	2 cut(s)	332, 445
SmoI	CTYRAG	2 cut(s)	332, 445
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	5 cut(s)	480, 513, 612, 737, 927
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	4 cut(s)	240, 830, 875, 981
SstI	GAGCTC	1 cut(s)	414
TaaI	ACNGT	3 cut(s)	557, 661, 783
TaqI	TCGA	1 cut(s)	771
TasI	AATT	5 cut(s)	480, 513, 612, 737, 927
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	17, 77
Tru1I	TTAA	4 cut(s)	333, 371, 446, 1032
Tru9I	TTAA	4 cut(s)	333, 371, 446, 1032
TscAI	CASTG	5 cut(s)	228, 664, 754, 948, 1074
TseFI	GTSAC	2 cut(s)	365, 508
TseI	GCWGC	9 cut(s)	29, 46, 110, 146, 204, 491, 704, 881, 884
Tsp45I	GTSAC	2 cut(s)	365, 508
TspDTI	ATGAA	3 cut(s)	107, 807, 1121
TspRI	CASTG	5 cut(s)	228, 664, 754, 948, 1074
Van91I	CCANNNNNTGG	1 cut(s)	899
Vha464I	CTTAAG	2 cut(s)	332, 445
VneI	GTGCAC	1 cut(s)	466
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	4 cut(s)	240, 830, 875, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.