Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005115.1

Orthogroup ID

OG0017246

Physical Location & Seq

Genomic Coordinates Forward (+)

6453 .. 8658

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005115.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgacacaaccaccagattcaacagaagcagcagaggaagaaaggcagcaagtagaagaagtagaagaggcagaagaatcaaaacatggcaaagggacatggaagcacgcagcgtttcatgtggccacaacgattgccacacctgctgcctatgctcctctgccttttgctctcgcttctcttggttggcctctcggggtaagcagcttggtaggtgcaacactggccacatggtattctagtctgcttatcgcttctctgtggaagtggaatgggaagaaacatgttacctatcgccaccttgcccaaagcattttcgcttcaataggcaataacattgccattcaaattgcagctgggagtagccttaaggctgtttacaagtattatcacaaggatggtgacttaactctgcaacattttgttattttctttggggtctttgagctctttctctctcagctccctgatatacactccttaagatgggtaaatgccttgtgcactttcagcacaattggctttgctgctacaaccattggtgtcacaatttataatgggaaaaagattgacagaaaatcaatcagttacggtttagatggaagctcatcatccaaagtctttagagccttcaatgctctcggagcaattgccttttcctttggagatgcaatgcttccagagatacagaacactgtgagagaacctgcaaagaaaaatgtgtacaaaggtgtatcagcagcttatggtatcatagtgttgagttactggcaattggccttcactgggccaacatatgcctacttcgaggagagactgttgtctaatgaaactgccacaagtcgttcctcactaagaaacaagctagttcgtcttgtttgtacctccatgtatatgctacttattacactagttgcagcagccatgccattctttggggattttgtggcaatatgcggagcaattgggttcacaccactggactttgtgttccctgctatggcatatctaaaagctagaagaagacggcaccaaaacaccaaaatgtatctgtctttgctacttcttaactttgctatagtggtttggttctcggctgttgcagtgttcggttgcattggggcagtcaagtttattgtggaagatgtcaagacttataagttctttcatgatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

392

Amino Acids

43.4

Weight (kDa)

9.14

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22320
malus_domestica	MD10G1191600.v1.1
prunus_persica	Prupe.8G230900_v2.0.a1
pyrus_communis	pycom10g16520
rosa_chinensis	RchiOBHm_Chr6g0289321
rosa_laevigata	RLG00000012313
rosa_multiflora	Rmu_sc0001527.1_g000025 Rmu_sc0005115.1_g000002
rosa_roxburghii	Rroxscaffold_7G00179340
rosa_rugosa	Rorug06G0202800 Rorug06G0203000
rosa_samantha	Rh6AG313600
rosa_wichuraiana	Rw6G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	555, 1158
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	2 cut(s)	151, 715
AccB1I	GGYRCC	1 cut(s)	1029
AccB7I	CCANNNNNTGG	1 cut(s)	935
AciI	CCGC	1 cut(s)	957
AcoI	YGGCCR	2 cut(s)	123, 225
AfaI	GTAC	2 cut(s)	725, 883
AfiI	CCNNNNNNNGG	4 cut(s)	486, 786, 935, 1000
AflII	CTTAAG	2 cut(s)	368, 481
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	21, 324, 347, 634
AhlI	ACTAGT	1 cut(s)	910
AloI	GAACNNNNNNTCC	2 cut(s)	974, 1006
AluBI	AGCT	8 cut(s)	207, 356, 448, 463, 606, 743, 865, 1016
AluI	AGCT	8 cut(s)	207, 356, 448, 463, 606, 743, 865, 1016
Alw21I	GWGCWC	2 cut(s)	450, 506
Alw26I	GTCTC	1 cut(s)	808
Alw44I	GTGCAC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	5 cut(s)	123, 188, 225, 777, 788
ApaLI	GTGCAC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	506
BalI	TGGCCA	2 cut(s)	125, 227
BanI	GGYRCC	1 cut(s)	1029
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	1030
Bbv12I	GWGCWC	2 cut(s)	450, 506
BccI	CCATC	3 cut(s)	392, 480, 593
BceAI	ACGGC	1 cut(s)	1043
BcoDI	GTCTC	1 cut(s)	808
BcuI	ACTAGT	1 cut(s)	910
BfaI	CTAG	4 cut(s)	240, 866, 911, 1017
BfmI	CTRYAG	1 cut(s)	1077
BfrI	CTTAAG	2 cut(s)	368, 481
BfuAI	ACCTGC	2 cut(s)	151, 715
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	1031
BmrI	ACTGGG	1 cut(s)	795
BmsI	GCATC	1 cut(s)	658
BmuI	ACTGGG	1 cut(s)	795
BoxI	GACNNNNGTC	1 cut(s)	820
BpiI	GAAGAC	1 cut(s)	1030
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	4 cut(s)	486, 786, 935, 1000
Bse1I	ACTGG	4 cut(s)	228, 773, 790, 984
Bse3DI	GCAATG	2 cut(s)	336, 678
BseGI	GGATG	2 cut(s)	403, 611
BseLI	CCNNNNNNNGG	4 cut(s)	486, 786, 935, 1000
BseMI	GCAATG	2 cut(s)	336, 678
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	4 cut(s)	228, 773, 790, 984
BseRI	GAGGAG	2 cut(s)	147, 824
BseSI	GKGCMC	1 cut(s)	506
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	5 cut(s)	125, 190, 227, 779, 790
BshNI	GGYRCC	1 cut(s)	1029
BsiHKAI	GWGCWC	2 cut(s)	450, 506
BsiHKCI	CYCGRG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	4 cut(s)	486, 786, 935, 1000
BsmAI	GTCTC	1 cut(s)	808
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	5 cut(s)	125, 190, 227, 779, 790
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	450, 506
Bsp1407I	TGTACA	1 cut(s)	723
BspACI	CCGC	1 cut(s)	957
BspANI	GGCC	5 cut(s)	125, 190, 227, 779, 790
BspCNI	CTCAG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	1 cut(s)	1031
BspMI	ACCTGC	2 cut(s)	151, 715
BspT107I	GGYRCC	1 cut(s)	1029
BspTI	CTTAAG	2 cut(s)	368, 481
BsrDI	GCAATG	2 cut(s)	336, 678
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	4 cut(s)	228, 773, 790, 984
Bst4CI	ACNGT	3 cut(s)	593, 697, 819
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	2 cut(s)	368, 481
BstAUI	TGTACA	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	459, 854
BstF5I	GGATG	2 cut(s)	403, 611
BstMAI	GTCTC	1 cut(s)	808
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 510, 519, 635, 644
BstNSI	RCATGY	1 cut(s)	287
BstPAI	GACNNNNGTC	1 cut(s)	820
BstSFI	CTRYAG	1 cut(s)	1077
BstSLI	GKGCMC	1 cut(s)	506
BstV2I	GAAGAC	1 cut(s)	1030
BsuRI	GGCC	5 cut(s)	125, 190, 227, 779, 790
BtsCI	GGATG	2 cut(s)	403, 611
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	5 cut(s)	221, 693, 783, 977, 1110
BveI	ACCTGC	2 cut(s)	151, 715
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	1168
Cfr13I	GGNCC	1 cut(s)	788
Csp6I	GTAC	2 cut(s)	724, 882
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	8 cut(s)	86, 99, 119, 231, 284, 889, 925, 1169
CviQI	GTAC	2 cut(s)	724, 882
DdeI	CTNAG	2 cut(s)	459, 854
EaeI	YGGCCR	2 cut(s)	123, 225
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	8 cut(s)	89, 102, 122, 234, 287, 892, 928, 1172
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	8 cut(s)	85, 98, 118, 230, 283, 888, 924, 1168
FauNDI	CATATG	1 cut(s)	796
FokI	GGATG	2 cut(s)	410, 598
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	4 cut(s)	240, 866, 911, 1017
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	5 cut(s)	125, 190, 227, 779, 790
Hin1II	CATG	8 cut(s)	89, 102, 122, 234, 287, 892, 928, 1172
HinfI	GANTC	2 cut(s)	17, 77
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	379, 504, 724, 972
Hpy188I	TCNGA	1 cut(s)	644
Hpy188III	TCNNGA	3 cut(s)	680, 1150, 1169
Hpy8I	GTNNAC	4 cut(s)	379, 504, 724, 972
HpyAV	CCTTC	2 cut(s)	640, 790
HpyCH4III	ACNGT	3 cut(s)	593, 697, 819
HpyCH4V	TGCA	9 cut(s)	218, 353, 415, 504, 671, 710, 917, 1103, 1116
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 510, 519, 635, 644
HpyF3I	CTNAG	2 cut(s)	459, 854
Hsp92II	CATG	8 cut(s)	89, 102, 122, 234, 287, 892, 928, 1172
LmnI	GCTCC	4 cut(s)	160, 468, 644, 959
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	4 cut(s)	240, 866, 911, 1017
MaeIII	GTNAC	5 cut(s)	286, 401, 544, 587, 764
MboII	GAAGA	8 cut(s)	50, 68, 77, 86, 289, 1032, 1035, 1154
MfeI	CAATTG	4 cut(s)	516, 648, 773, 963
MhlI	GDGCHC	2 cut(s)	450, 506
MlsI	TGGCCA	2 cut(s)	125, 227
MluCI	AATT	6 cut(s)	348, 516, 549, 648, 773, 963
MluNI	TGGCCA	2 cut(s)	125, 227
MnlI	CCTC	7 cut(s)	28, 61, 168, 201, 802, 859, 895
Mox20I	TGGCCA	2 cut(s)	125, 227
MscI	TGGCCA	2 cut(s)	125, 227
MseI	TTAA	4 cut(s)	369, 407, 482, 1068
MslI	CAYNNNNRTG	3 cut(s)	396, 893, 1043
Msp20I	TGGCCA	2 cut(s)	125, 227
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	2 cut(s)	368, 481
MunI	CAATTG	4 cut(s)	516, 648, 773, 963
MwoI	GCNNNNNNNGC	7 cut(s)	143, 152, 224, 510, 519, 635, 644
NdeI	CATATG	1 cut(s)	796
NlaIII	CATG	8 cut(s)	89, 102, 122, 234, 287, 892, 928, 1172
NlaIV	GGNNCC	1 cut(s)	1031
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	2 cut(s)	401, 544
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	1168
PaqCI	CACCTGC	1 cut(s)	151
PciI	ACATGT	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	17, 77
PflMI	CCANNNNNTGG	1 cut(s)	935
PscI	ACATGT	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	820
PsiI	TTATAA	2 cut(s)	555, 1158
Psp124BI	GAGCTC	1 cut(s)	450
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	1031
PspPI	GGNCC	1 cut(s)	788
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	2 cut(s)	725, 883
RsaNI	GTAC	2 cut(s)	724, 882
RseI	CAYNNNNRTG	3 cut(s)	396, 893, 1043
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	369, 407, 482, 1068
Sau96I	GGNCC	1 cut(s)	788
SduI	GDGCHC	2 cut(s)	450, 506
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	3 cut(s)	396, 893, 1043
SmlI	CTYRAG	2 cut(s)	368, 481
SmoI	CTYRAG	2 cut(s)	368, 481
SpeI	ACTAGT	1 cut(s)	910
Sse9I	AATT	6 cut(s)	348, 516, 549, 648, 773, 963
SsiI	CCGC	1 cut(s)	957
SspMI	CTAG	4 cut(s)	240, 866, 911, 1017
SstI	GAGCTC	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	593, 697, 819
TaqI	TCGA	1 cut(s)	807
TasI	AATT	6 cut(s)	348, 516, 549, 648, 773, 963
TatI	WGTACW	1 cut(s)	723
TfiI	GAWTC	2 cut(s)	17, 77
Tru1I	TTAA	4 cut(s)	369, 407, 482, 1068
Tru9I	TTAA	4 cut(s)	369, 407, 482, 1068
TscAI	CASTG	5 cut(s)	228, 700, 790, 984, 1110
TseFI	GTSAC	2 cut(s)	401, 544
Tsp45I	GTSAC	2 cut(s)	401, 544
TspDTI	ATGAA	3 cut(s)	107, 843, 1157
TspRI	CASTG	5 cut(s)	228, 700, 790, 984, 1110
Van91I	CCANNNNNTGG	1 cut(s)	935
Vha464I	CTTAAG	2 cut(s)	368, 481
VneI	GTGCAC	1 cut(s)	502
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	4 cut(s)	240, 866, 911, 1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.