Rmu_sc0001557.1_g000019

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001557.1
OG0016034
Physical Location & Seq
Forward (+)
74655 .. 76122
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgttacaaatcccaaaattcttgcagtcctccactcaatgccttcatcttctgacgccgcaaccgccactacccattctacaagtcccaggtgtacctacttcttcatcttttccttccatcaaacaatgctgtaagctatcacgtagagaacttgcaattcgaagcaattctctgttacttctcctcctgggctcgcagagcattgaggcttttctaccgtctaaagcagaggccgaggaggatgtggttgatgccggtagcaatgcacaagaacaaagttcaaacgctactcctacttgcggtgataagagcccaacaaagcgtgcatttcttgatatatcaattgacggagcgcctgttggccgcatggcttttctaccgtctaaagcagaggccgaggaggatgtggttgatgccggtagcaatgcacaagaacaaagttcaaactctactcctacttgcggtgataagagcccaacaaagcgtgcatttcttgatatatcaattgacggagcgcctgttggccgcattgtcatcgggatacaggaagatgatgctcctgttggggctgctcgatttcgtaatcttgtcagtggagctgctggggtgagctacagaaggaaagagtttgttaaaattacgccaaattatgtgcaacatggtggtgtgagatcttatggtgtagatgctgagctcgcaaagagcacaggaagcagtttggaagttgataagctcactgaagagtgggagagtttgtatgaaaagtgtccaggcatcaagaacaaggctggcactgtggggattattgtgagagacccttcaaaaccaccgccgaaaatcaagctggttgcgcggaaagggaagctggagattgatcaagaggaggttggtacggccccgaacggaacagagtttgtgatttctaccaaagattcacctgagctcgatgcttcgactttggtggttggaagagttttggaaggtatggaggtcgtggagaggcttggccaggtgaaaaccgtgcaagagaacactagttcgccttattttagggtggccaagctgataggagataagagagctgtcgtcgcagaaagaggattcaaccgcccttacgccaaggtagttgtcacaaactgtggcctgatacagtaa

Protein Analysis

385

Amino Acids

41.25

Weight (kDa)

6.28

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 166 - 346 1.3e-16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74070 AT1G74070
fragaria_vesca FvH4_5g12840
malus_domestica MD14G1220500.v1.1
prunus_persica Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184401
rosa_laevigata RLG00000004979
rosa_multiflora Rmu_sc0001557.1_g000019
rosa_roxburghii Rroxscaffold_3G00269660
rosa_samantha Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana Rw7G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 856
AciI CCGC 9 cut(s) 59, 65, 303, 367, 465, 529, 833, 856, 1111
AcoI YGGCCR 4 cut(s) 364, 526, 1009, 1059
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 96, 895
AfiI CCNNNNNNNGG 2 cut(s) 302, 464
AgsI TTSAA 4 cut(s) 285, 447, 825, 1108
AhlI ACTAGT 1 cut(s) 1037
AjnI CCWGG 4 cut(s) 88, 189, 772, 1011
Alw21I GWGCWC 3 cut(s) 699, 710, 948
Alw26I GTCTC 1 cut(s) 810
AoxI GGCC 8 cut(s) 234, 364, 396, 526, 897, 1009, 1059, 1144
ApeKI GCWGC 2 cut(s) 572, 602
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 3 cut(s) 358, 520, 856
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 5 cut(s) 317, 479, 622, 930, 1027
AsuII TTCGAA 1 cut(s) 163
BalI TGGCCA 2 cut(s) 1011, 1061
BanII GRGCYC 5 cut(s) 197, 317, 479, 699, 948
Bbv12I GWGCWC 3 cut(s) 699, 710, 948
BbvI GCAGC 2 cut(s) 559, 589
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 912
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 4 cut(s) 90, 191, 774, 1013
BciVI GTATCC 1 cut(s) 537
BclI TGATCA 1 cut(s) 877
BcoDI GTCTC 1 cut(s) 810
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 1 cut(s) 1038
BfmI CTRYAG 1 cut(s) 616
BfoI RGCGCY 2 cut(s) 359, 521
BfuI GTATCC 1 cut(s) 537
BglII AGATCT 1 cut(s) 674
BisI GCNGC 5 cut(s) 59, 367, 529, 573, 603
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 5 cut(s) 60, 368, 530, 574, 604
Bme1390I CCNGG 4 cut(s) 90, 191, 774, 1013
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 1 cut(s) 900
BmrFI CCNGG 4 cut(s) 90, 191, 774, 1013
BmsI GCATC 6 cut(s) 244, 406, 547, 679, 786, 940
BpmI CTGGAG 1 cut(s) 890
Bpu10I CCTNAGC 1 cut(s) 942
Bpu1102I GCTNAGC 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 810
BsaJI CCNNGG 5 cut(s) 88, 190, 237, 399, 1122
BsaXI ACNNNNNCTCC 8 cut(s) 171, 201, 345, 375, 507, 537, 743, 773
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 464
Bse118I RCCGGY 2 cut(s) 257, 419
Bse3DI GCAATG 2 cut(s) 271, 433
BseBI CCWGG 4 cut(s) 90, 191, 774, 1013
BseDI CCNNGG 5 cut(s) 88, 190, 237, 399, 1122
BseGI GGATG 2 cut(s) 250, 412
BseLI CCNNNNNNNGG 2 cut(s) 302, 464
BseMI GCAATG 2 cut(s) 271, 433
BseMII CTCAG 2 cut(s) 684, 933
BseRI GAGGAG 4 cut(s) 176, 254, 416, 899
BseXI GCAGC 2 cut(s) 559, 589
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 8 cut(s) 236, 366, 398, 528, 899, 1011, 1061, 1146
BsiHKAI GWGCWC 3 cut(s) 699, 710, 948
BsiSI CCGG 2 cut(s) 258, 420
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 302, 464
BsmAI GTCTC 1 cut(s) 810
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 8 cut(s) 236, 366, 398, 528, 899, 1011, 1061, 1146
Bso31I GGTCTC 1 cut(s) 810
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 6 cut(s) 197, 317, 479, 699, 710, 948
Bsp143I GATC 2 cut(s) 674, 877
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 9 cut(s) 59, 65, 303, 367, 465, 529, 833, 856, 1111
BspANI GGCC 8 cut(s) 236, 366, 398, 528, 899, 1011, 1061, 1146
BspCNI CTCAG 2 cut(s) 685, 934
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 900
BspT104I TTCGAA 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 271, 433
BsrFI RCCGGY 2 cut(s) 257, 419
BssAI RCCGGY 2 cut(s) 257, 419
BssECI CCNNGG 5 cut(s) 88, 190, 237, 399, 1122
BssMI GATC 2 cut(s) 674, 877
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 1122
Bst2UI CCWGG 4 cut(s) 90, 191, 774, 1013
Bst4CI ACNGT 6 cut(s) 222, 384, 799, 1024, 1142, 1155
Bst6I CTCTTC 2 cut(s) 738, 967
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 5 cut(s) 197, 327, 489, 699, 793
BstDEI CTNAG 2 cut(s) 693, 942
BstF5I GGATG 2 cut(s) 250, 412
BstFNI CGCG 1 cut(s) 856
BstH2I RGCGCY 2 cut(s) 359, 521
BstHHI GCGC 3 cut(s) 358, 520, 856
BstKTI GATC 2 cut(s) 677, 880
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 2 cut(s) 674, 877
BstMWI GCNNNNNNNGC 6 cut(s) 64, 201, 698, 714, 853, 1091
BstNI CCWGG 4 cut(s) 90, 191, 774, 1013
BstSCI CCNGG 4 cut(s) 88, 189, 772, 1011
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 2 cut(s) 559, 589
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 8 cut(s) 236, 366, 398, 528, 899, 1011, 1061, 1146
BtsCI GGATG 2 cut(s) 250, 412
BtsIMutI CAGTG 3 cut(s) 601, 738, 795
Cac8I GCNNGC 5 cut(s) 197, 327, 489, 699, 793
CfoI GCGC 3 cut(s) 358, 520, 856
Cfr10I RCCGGY 2 cut(s) 257, 419
Cfr13I GGNCC 1 cut(s) 898
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 95, 894
CviAII CATG 2 cut(s) 370, 662
CviQI GTAC 2 cut(s) 95, 894
DdeI CTNAG 2 cut(s) 693, 942
DpnI GATC 2 cut(s) 676, 879
DpnII GATC 2 cut(s) 674, 877
EaeI YGGCCR 4 cut(s) 364, 526, 1009, 1059
Eam1104I CTCTTC 2 cut(s) 738, 967
EarI CTCTTC 2 cut(s) 738, 967
Ecl136II GAGCTC 2 cut(s) 697, 946
Eco130I CCWWGG 1 cut(s) 1122
Eco24I GRGCYC 5 cut(s) 197, 317, 479, 699, 948
Eco31I GGTCTC 1 cut(s) 810
Eco53kI GAGCTC 2 cut(s) 697, 946
Eco57I CTGAAG 1 cut(s) 762
EcoICRI GAGCTC 2 cut(s) 697, 946
EcoRII CCWGG 4 cut(s) 88, 189, 772, 1011
EcoT14I CCWWGG 1 cut(s) 1122
EcoT38I GRGCYC 5 cut(s) 197, 317, 479, 699, 948
ErhI CCWWGG 1 cut(s) 1122
FaeI CATG 2 cut(s) 373, 665
FaiI YATR 8 cut(s) 341, 371, 503, 654, 663, 681, 762, 989
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 369, 661
FbaI TGATCA 1 cut(s) 877
Fnu4HI GCNGC 5 cut(s) 59, 367, 529, 573, 603
FokI GGATG 2 cut(s) 257, 419
FriOI GRGCYC 5 cut(s) 197, 317, 479, 699, 948
Fsp4HI GCNGC 5 cut(s) 59, 367, 529, 573, 603
FspBI CTAG 1 cut(s) 1038
GlaI GCGC 3 cut(s) 357, 519, 855
GluI GCNGC 5 cut(s) 59, 367, 529, 573, 603
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 890
HaeII RGCGCY 2 cut(s) 359, 521
HaeIII GGCC 8 cut(s) 236, 366, 398, 528, 899, 1011, 1061, 1146
HapII CCGG 2 cut(s) 258, 420
HgaI GACGC 1 cut(s) 64
HhaI GCGC 3 cut(s) 358, 520, 856
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 2 cut(s) 373, 665
Hin6I GCGC 3 cut(s) 356, 518, 854
HinP1I GCGC 3 cut(s) 356, 518, 854
HinfI GANTC 2 cut(s) 935, 1104
HpaII CCGG 2 cut(s) 258, 420
HphI GGTGA 5 cut(s) 317, 479, 622, 930, 1027
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 5 cut(s) 335, 497, 541, 781, 881
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 1094
HpyAV CCTTC 5 cut(s) 53, 126, 615, 831, 977
HpyCH4III ACNGT 6 cut(s) 222, 384, 799, 1024, 1142, 1155
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 8 cut(s) 25, 158, 269, 329, 431, 491, 658, 1027
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 201, 698, 714, 853, 1091
HpyF3I CTNAG 2 cut(s) 693, 942
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 373, 665
HspAI GCGC 3 cut(s) 356, 518, 854
Ksp22I TGATCA 1 cut(s) 877
Kzo9I GATC 2 cut(s) 674, 877
LmnI GCTCC 4 cut(s) 353, 515, 565, 599
Lsp1109I GCAGC 2 cut(s) 559, 589
LweI GCATC 6 cut(s) 244, 406, 547, 679, 786, 940
MaeI CTAG 1 cut(s) 1038
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 3, 177, 1132
MalI GATC 2 cut(s) 676, 879
MboI GATC 2 cut(s) 674, 877
MboII GAAGA 5 cut(s) 41, 96, 563, 755, 984
MfeI CAATTG 2 cut(s) 345, 507
MflI RGATCY 1 cut(s) 674
MhlI GDGCHC 6 cut(s) 197, 317, 479, 699, 710, 948
MlsI TGGCCA 2 cut(s) 1011, 1061
MluCI AATT 7 cut(s) 17, 159, 169, 345, 507, 639, 649
MluNI TGGCCA 2 cut(s) 1011, 1061
MmeI TCCRAC 1 cut(s) 949
Mox20I TGGCCA 2 cut(s) 1011, 1061
MroXI GAANNNNTTC 1 cut(s) 169
MscI TGGCCA 2 cut(s) 1011, 1061
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 666
Msp20I TGGCCA 2 cut(s) 1011, 1061
MspI CCGG 2 cut(s) 258, 420
MspR9I CCNGG 4 cut(s) 90, 191, 774, 1013
MunI CAATTG 2 cut(s) 345, 507
MvaI CCWGG 4 cut(s) 90, 191, 774, 1013
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 6 cut(s) 64, 201, 698, 714, 853, 1091
NdeII GATC 2 cut(s) 674, 877
NlaIII CATG 2 cut(s) 373, 665
NlaIV GGNNCC 1 cut(s) 900
NmeAIII GCCGAG 2 cut(s) 262, 424
NmuCI GTSAC 1 cut(s) 1132
NspV TTCGAA 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 935, 1104
PkrI GCNGC 5 cut(s) 60, 368, 530, 574, 604
Ppu21I YACGTR 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 699, 948
Psp6I CCWGG 4 cut(s) 88, 189, 772, 1011
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 4 cut(s) 88, 189, 772, 1011
PspN4I GGNNCC 1 cut(s) 900
PspPI GGNCC 1 cut(s) 898
PsuI RGATCY 1 cut(s) 674
RsaI GTAC 2 cut(s) 96, 895
RsaNI GTAC 2 cut(s) 95, 894
RseI CAYNNNNRTG 1 cut(s) 666
SacI GAGCTC 2 cut(s) 699, 948
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 5 cut(s) 59, 367, 529, 573, 603
Sau3AI GATC 2 cut(s) 674, 877
Sau96I GGNCC 1 cut(s) 898
ScrFI CCNGG 4 cut(s) 90, 191, 774, 1013
SduI GDGCHC 6 cut(s) 197, 317, 479, 699, 710, 948
SfaNI GCATC 6 cut(s) 244, 406, 547, 679, 786, 940
SfcI CTRYAG 1 cut(s) 616
SfuI TTCGAA 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 1037
Sse9I AATT 7 cut(s) 17, 159, 169, 345, 507, 639, 649
SsiI CCGC 9 cut(s) 59, 65, 303, 367, 465, 529, 833, 856, 1111
SspMI CTAG 1 cut(s) 1038
SstI GAGCTC 2 cut(s) 699, 948
StyD4I CCNGG 4 cut(s) 88, 189, 772, 1011
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 6 cut(s) 222, 384, 799, 1024, 1142, 1155
TaiI ACGT 1 cut(s) 148
TaqI TCGA 4 cut(s) 163, 577, 948, 956
TasI AATT 7 cut(s) 17, 159, 169, 345, 507, 639, 649
TauI GCSGC 3 cut(s) 61, 369, 531
TfiI GAWTC 2 cut(s) 935, 1104
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 601, 745, 802
TseFI GTSAC 1 cut(s) 1132
TseI GCWGC 2 cut(s) 572, 602
Tsp45I GTSAC 1 cut(s) 1132
TspDTI ATGAA 3 cut(s) 35, 96, 777
TspGWI ACGGA 3 cut(s) 366, 528, 921
TspRI CASTG 3 cut(s) 601, 745, 802
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.