Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001565.1

Orthogroup ID

OG0018646

Physical Location & Seq

Genomic Coordinates Reverse (-)

223437 .. 223718

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgacagacttacaagttcagtttcatcaggaatgcgaggacgagttcaaggtcagcaacgactcggggctgtcggaggaggaagtcgagaagcatcgggcggtgtacggatggaacgaactggagaagcaccaggatcggtcgagatcggagatcggagatcgggtgtacggatggaacgaactggagaagcaccgggttctgttgttcgcggcggttctctccttcgctatctattggtcgtctgagatcggagatcgctctgatctgttggtcgcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010042 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030176 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0034220 GO:0042175 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0098827 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

93

Amino Acids

10.9

Weight (kDa)

4.68

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	10 - 48	1.5e-08	Cation transporter/ATPase, N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018646)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001675 RLG00000013678 RLG00000015518
rosa_multiflora	Rmu_sc0000951.1_g000005 Rmu_sc0001565.1_g000049
rosa_roxburghii	Rroxscaffold_2G00085890 Rroxscaffold_4G00289110
rosa_samantha	Rh4CG009900 Rh5AG030000 Rh7CG429800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	3 cut(s)	101, 212, 215
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	107, 170
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	132
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	64
BccI	CCATC	2 cut(s)	105, 168
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	197
BfaI	CTAG	1 cut(s)	280
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	2 cut(s)	134, 197
BmeT110I	CYCGRG	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	134, 197
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	2 cut(s)	143, 206
BpuMI	CCSGG	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse1I	ACTGG	2 cut(s)	126, 189
BseBI	CCWGG	1 cut(s)	134
BseGI	GGATG	2 cut(s)	116, 179
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	126, 189
BseRI	GAGGAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	64
Bsp143I	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
BspACI	CCGC	3 cut(s)	101, 212, 215
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	126, 189
BssMI	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
Bst2UI	CCWGG	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	116, 179
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	7 cut(s)	139, 149, 156, 163, 252, 259, 268
BstMBI	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
BstMCI	CGRYCG	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 195
BstUI	CGCG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	116, 179
Csp6I	GTAC	2 cut(s)	106, 169
CviJI	RGCY	1 cut(s)	70
CviKI_1	RGCY	1 cut(s)	70
CviQI	GTAC	2 cut(s)	106, 169
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	7 cut(s)	138, 148, 155, 162, 251, 258, 267
DpnII	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	123, 186
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	280
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	143, 206
HapII	CCGG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	106, 169
Hpy188I	TCNGA	6 cut(s)	76, 151, 158, 247, 254, 265
Hpy188III	TCNNGA	3 cut(s)	29, 88, 144
Hpy8I	GTNNAC	2 cut(s)	106, 169
HpyAV	CCTTC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	246
Kzo9I	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
LpnPI	CCDG	6 cut(s)	14, 107, 119, 146, 170, 209
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	280
MalI	GATC	7 cut(s)	138, 148, 155, 162, 251, 258, 267
MboI	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	31, 70, 73
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	134, 197
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	212
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 177
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
RsaI	GTAC	2 cut(s)	107, 170
RsaNI	GTAC	2 cut(s)	106, 169
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	7 cut(s)	136, 146, 153, 160, 249, 256, 265
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	134, 197
SetI	ASST	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	103
SsiI	CCGC	3 cut(s)	101, 212, 215
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	132, 195
TaqI	TCGA	2 cut(s)	87, 143
TaqII	GACCGA	1 cut(s)	129
TauI	GCSGC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	2 cut(s)	123, 186
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.