Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0008563

Physical Location & Seq

Genomic Coordinates Forward (+)

46642 .. 47310

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgttcatggatccaagcaatccaacctggggttggagctggttggaacggtggatggctgcccggccatgggagagtcgtggcatgacagataaagacatccacgacgatcgctcatctgttaagagtgtaattactcgcagcatttcccccggagaaatcaataagtcatatgctcgatacctcctcaattccgataagcaatcccctacagccagtgaaaagccaagtcaacctggattccacttaccgtcaactccttcaaggccagcttctacaaaagtagctcgaaaattgaagccgtcaccaagcccaaggggtaacattcgtaccccagatgatgacacaaagagtgtggccagcatgcagtcagttcagtttaggaggcacagcattgctggctcatcagtaagggatgacgagagcatggacagttctccatcacttccaagttacatggtaccaactaaatctgcgagagctaagtccaggttgcagagtccggcagaaaagaatgggataactgagaaggataccgagtctgttaagaaacggctctccttccctgcctcgccagccagaccaaggcggcattctggtccgccaaaggtggatacaactttaatcactacagaaagaaaagtgagcagtgttgaagttggaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

222

Amino Acids

24.61

Weight (kDa)

10.15

Isoelectric Point (pI)

76.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4005	PF13178	136 - 194	2.5e-07	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52290 AT5G03040 AT5G03040 AT5G03040
fragaria_vesca	FvH4_6g15440 FvH4_6g15440
malus_domestica	MD04G1103600.v1.1 MD12G1123500.v1.1
prunus_persica	Prupe.6G239700_v2.0.a1
pyrus_communis	pycom04g09880 pycom12g12220
rosa_chinensis	RchiOBHm_Chr3g0468921
rosa_laevigata	RLG00000024400
rosa_multiflora	Rmu_co8378931.1_g000001 Rmu_sc0001639.1_g000010 Rmu_sc0003298.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412460
rosa_rugosa	Rorug03G0097600 Rorug03G0097600
rosa_samantha	Rh3AG147200 Rh3BG169800 Rh3DG205300
rosa_wichuraiana	Rw3G013850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	460
AciI	CCGC	2 cut(s)	589, 602
AclWI	GGATC	2 cut(s)	5, 18
AcoI	YGGCCR	2 cut(s)	65, 357
AfaI	GTAC	2 cut(s)	331, 462
AfiI	CCNNNNNNNGG	5 cut(s)	29, 33, 69, 70, 585
AgsI	TTSAA	3 cut(s)	264, 298, 656
AjnI	CCWGG	3 cut(s)	26, 235, 488
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AluBI	AGCT	4 cut(s)	39, 272, 287, 482
AluI	AGCT	4 cut(s)	39, 272, 287, 482
AlwI	GGATC	2 cut(s)	5, 18
AoxI	GGCC	3 cut(s)	65, 266, 357
ApeKI	GCWGC	2 cut(s)	59, 141
Asp718I	GGTACC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	2 cut(s)	64, 153
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BalI	TGGCCA	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	460
BbvI	GCAGC	2 cut(s)	46, 153
BccI	CCATC	2 cut(s)	49, 448
BceAI	ACGGC	2 cut(s)	286, 569
BciT130I	CCWGG	3 cut(s)	28, 237, 490
BciVI	GTATCC	2 cut(s)	526, 607
BcnI	CCSGG	2 cut(s)	64, 153
BfmI	CTRYAG	2 cut(s)	210, 630
BfuI	GTATCC	2 cut(s)	526, 607
BisI	GCNGC	3 cut(s)	60, 142, 590
BlsI	GCNGC	3 cut(s)	61, 143, 591
Bme1390I	CCNGG	5 cut(s)	28, 64, 153, 237, 490
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	12, 462
BmrFI	CCNGG	5 cut(s)	28, 64, 153, 237, 490
BpuMI	CCSGG	2 cut(s)	64, 153
BsaJI	CCNNGG	5 cut(s)	27, 68, 151, 314, 584
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 33, 69, 70, 585
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	3 cut(s)	28, 237, 490
BseDI	CCNNGG	5 cut(s)	27, 68, 151, 314, 584
BseGI	GGATG	3 cut(s)	60, 99, 421
BseLI	CCNNNNNNNGG	5 cut(s)	29, 33, 69, 70, 585
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	46, 153
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	3 cut(s)	67, 268, 359
BshNI	GGYRCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	64, 153, 503
BslI	CCNNNNNNNGG	5 cut(s)	29, 33, 69, 70, 585
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	67, 268, 359
Bsp143I	GATC	2 cut(s)	10, 109
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	2 cut(s)	589, 602
BspANI	GGCC	3 cut(s)	67, 268, 359
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	12, 462
BspPI	GGATC	2 cut(s)	5, 18
BspT107I	GGYRCC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	5 cut(s)	27, 68, 151, 314, 584
BssMI	GATC	2 cut(s)	10, 109
BssT1I	CCWWGG	3 cut(s)	68, 314, 584
Bst2UI	CCWGG	3 cut(s)	28, 237, 490
Bst4CI	ACNGT	3 cut(s)	51, 252, 434
BstC8I	GCNNGC	5 cut(s)	270, 361, 365, 400, 576
BstDEI	CTNAG	2 cut(s)	483, 525
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	60, 99, 421
BstKTI	GATC	2 cut(s)	13, 112
BstMBI	GATC	2 cut(s)	10, 109
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	399, 575
BstNI	CCWGG	3 cut(s)	28, 237, 490
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	5 cut(s)	26, 62, 151, 235, 488
BstSFI	CTRYAG	2 cut(s)	210, 630
BstV1I	GCAGC	2 cut(s)	46, 153
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	2 cut(s)	526, 607
BsuRI	GGCC	3 cut(s)	67, 268, 359
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	60, 99, 421
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	223, 655
Cac8I	GCNNGC	5 cut(s)	270, 361, 365, 400, 576
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	330, 461
CspCI	CAANNNNNGTGG	2 cut(s)	336, 371
CviAII	CATG	6 cut(s)	7, 69, 85, 364, 427, 457
CviQI	GTAC	2 cut(s)	330, 461
DdeI	CTNAG	2 cut(s)	483, 525
DpnI	GATC	2 cut(s)	12, 111
DpnII	GATC	2 cut(s)	10, 109
EaeI	YGGCCR	2 cut(s)	65, 357
EciI	GGCGGA	1 cut(s)	591
Eco130I	CCWWGG	3 cut(s)	68, 314, 584
Eco47I	GGWCC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	26, 235, 488
EcoT14I	CCWWGG	3 cut(s)	68, 314, 584
ErhI	CCWWGG	3 cut(s)	68, 314, 584
FaeI	CATG	6 cut(s)	10, 72, 88, 367, 430, 460
FaiI	YATR	8 cut(s)	8, 70, 86, 172, 174, 365, 428, 458
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FatI	CATG	6 cut(s)	6, 68, 84, 363, 426, 456
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	60, 142, 590
FokI	GGATG	3 cut(s)	67, 86, 428
Fsp4HI	GCNGC	3 cut(s)	60, 142, 590
GluI	GCNGC	3 cut(s)	60, 142, 590
HaeIII	GGCC	3 cut(s)	67, 268, 359
HapII	CCGG	3 cut(s)	64, 153, 503
Hin1II	CATG	6 cut(s)	10, 72, 88, 367, 430, 460
HincII	GTYRAC	2 cut(s)	233, 255
HindII	GTYRAC	2 cut(s)	233, 255
HinfI	GANTC	4 cut(s)	76, 240, 499, 539
HpaII	CCGG	3 cut(s)	64, 153, 503
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	233, 255
Hpy188I	TCNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	233, 255
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	270, 523, 571
HpyCH4III	ACNGT	3 cut(s)	51, 252, 434
HpyCH4V	TGCA	2 cut(s)	367, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	399, 575
HpyF3I	CTNAG	2 cut(s)	483, 525
Hsp92II	CATG	6 cut(s)	10, 72, 88, 367, 430, 460
KpnI	GGTACC	1 cut(s)	464
Kzo9I	GATC	2 cut(s)	10, 109
LmnI	GCTCC	1 cut(s)	36
Lsp1109I	GCAGC	2 cut(s)	46, 153
MaeIII	GTNAC	3 cut(s)	303, 320, 452
MalI	GATC	2 cut(s)	12, 111
MboI	GATC	2 cut(s)	10, 109
MflI	RGATCY	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	3 cut(s)	132, 190, 293
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	85, 508, 548
MmeI	TCCRAC	4 cut(s)	14, 24, 47, 640
MnlI	CCTC	4 cut(s)	194, 197, 378, 580
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	3 cut(s)	123, 546, 623
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	3 cut(s)	64, 153, 503
MspR9I	CCNGG	5 cut(s)	28, 64, 153, 237, 490
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	3 cut(s)	28, 237, 490
MwoI	GCNNNNNNNGC	2 cut(s)	399, 575
NciI	CCSGG	2 cut(s)	64, 153
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	2 cut(s)	10, 109
NlaIII	CATG	6 cut(s)	10, 72, 88, 367, 430, 460
NlaIV	GGNNCC	2 cut(s)	12, 462
NmuCI	GTSAC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	367
PaeI	GCATGC	1 cut(s)	367
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	61, 143, 591
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	3 cut(s)	84, 507, 547
PpsI	GAGTC	3 cut(s)	84, 507, 547
Psp6I	CCWGG	3 cut(s)	26, 235, 488
PspGI	CCWGG	3 cut(s)	26, 235, 488
PspN4I	GGNNCC	2 cut(s)	12, 462
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	10
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	331, 462
RsaNI	GTAC	2 cut(s)	330, 461
SaqAI	TTAA	3 cut(s)	123, 546, 623
SatI	GCNGC	3 cut(s)	60, 142, 590
Sau3AI	GATC	2 cut(s)	10, 109
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	3 cut(s)	85, 508, 548
ScrFI	CCNGG	5 cut(s)	28, 64, 153, 237, 490
SetI	ASST	9 cut(s)	29, 41, 186, 238, 274, 289, 484, 494, 612
SfcI	CTRYAG	2 cut(s)	210, 630
SinI	GGWCC	1 cut(s)	599
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	3 cut(s)	132, 190, 293
SsiI	CCGC	2 cut(s)	589, 602
StyD4I	CCNGG	5 cut(s)	26, 62, 151, 235, 488
StyI	CCWWGG	3 cut(s)	68, 314, 584
TaaI	ACNGT	3 cut(s)	51, 252, 434
TaqI	TCGA	2 cut(s)	178, 289
TasI	AATT	3 cut(s)	132, 190, 293
TauI	GCSGC	1 cut(s)	592
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	123, 546, 623
Tru9I	TTAA	3 cut(s)	123, 546, 623
TscAI	CASTG	2 cut(s)	223, 655
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	2 cut(s)	59, 141
Tsp45I	GTSAC	1 cut(s)	303
TspRI	CASTG	2 cut(s)	223, 655
VpaK11BI	GGWCC	1 cut(s)	599
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.