Rmu_sc0001651.1_g000010

Serine threonine-protein kinase endoribonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001651.1
OG0011468
Physical Location & Seq
Forward (+)
48117 .. 52081
3965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001651.1_g000010.1.cds

Sequence Viewer

Length: 2559 bp
atgaagcaccagcaccagcaccatgccgccacctggaaactcctcctactcctcctcctcctcatcctcggctccacaggcccaaacgccgccgtttcggcctccgcgcttctgcgatcgcagccgaaccacaacgccggcctctctcgctctcccagccgatcgctcctctcccatccaccgcctaagcgtagcactcaatttgtggcggtgccggaggggaagttacggttagtggacactgattccggcgcagtaatttatactgtggatttaggggcgctgctgtacagttcgtaccaggctcctcaaggcaaagataacaataggttccacgtagatgttgatgaagatggcgaggtctatttggtcagtaatgatatcaaacagaacctgcatattccaatctcagagtttgtccacaagacgccttacacattagaggatggatcagttacagttggatcgaagaagaccactacctttgtgattgatccgatgaccggaaggataattcacacatacacttcatctcgcggagaggagcagggtcttctgtaccctggttttattaaaggcattaagcaatggatcaagcctgttccaaccaatccaaatgctgctaaggcgctactatatgtcctggtgacagagtatttcttgaaggcataccttccacattcaaatgaagtctcatggaatttgacgtattctgaaattggagttatttcattttgttcagatattgagagtccggttagtggggcctttggttctgaagcaggcagtgatattgttttaccgttatcatgtcaatcaaaaataagagtccgccatcaaaatcgtatatcgattgaaccatctagacatggcagattgttggaggaacataacacagataagatcctctcagatcccactgcaaatgcaatgcctgttgtgagaaaatctcctaaaggcatgttagtcatgctttttgattggtcacgagttttgactctcagtttctcctttatcatcctcatgggctttgttatatactgctatacttatgtagttaaaaggcaacagctcagtaattctgattcaaatactgcaccttccaagagaaggaagagtcggaaatcagaaaagaatgctagtggcattggtgaagaaaaggagaaacatgtatcatctcaggatgaggaagctttagcacactctgagggtgataacaaaacattgttccttgataaactattttatggtgctgcagttggtcgcaggattggtaaactacttgtatcaaatacagagatcgccaagggaagcaatggcaccattgtcctggagggagtttatgaaggtcgacctgttgcagtcaaacgccttgttctagctcatcatgacgtggcttttaaagaaattcagaatcttattgcatctgaccaacatcagaacatagtccgatggtacggtgtggagtacgatcgagattttgtctatctctctctggagcgttgtatttgcaacttggatgatttcatacaaatttactcaaattccggtgaaaatcctgtagctggtgaggaatatgctatcattcaaaataaagttcgcttgtcaacagtaaagaatcttatgccgaacgttaatttgtggaaagaaaatggtctattgtcccccctattgttgaaattgatgagggatgtcgtctgtgggcttgtgcatttacatgaattggggataattcatagggacttaaagcctcaaaatgttttgttaattaaggaaagttcattttgtgcaaagctttctgacatgggcatcagcaagcgacttattggggacatgtcttctttgggttctggtagttcgggttggcaagcacctgaacagcttcttcacgggcggcaaacacgtgcagtggatttgtttagtttaggttgtgtcatcttcttttgcatcactggtggtagacatccatttggtgatcgcctcgaacgtgatataaatattgtgaagaaccaaatggatctcttcttggtggagtatattccggaagctttggatcttatatctcgattgttaaatcgtgaccctgaattgaggccaaaggctttggaggtgttgcaccatcctcttttctggagctctgggttgagactctcattcctgcgagactatagtgacagggtagaactggaagatagacaggctaactctgatcttctgaaagccctagaaagtaccgcacccgtggctttgggtgggaaatggaatgaaaagatggatcctgcattcctcactaacattggccattacaggcgttataagtttgacagtgtccgggacttactgcgagtcatgcggaacaaatataatcactatagagagctcccaaaggaaatccaggaactcctaggtccagtgcccgaaggatatgatcactactttgcaagtcggttcccaaaacttctgattgaagtatacaaagttgcgtgcaaacattgtagagaagaggaatggtttcagaagtatttcaaaagcactgccaatgagtcctcgggactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0005975 GO:0006020 GO:0006066 GO:0006139 GO:0006396 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0014070 GO:0016020 GO:0016021 GO:0016043 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019538 GO:0019751 GO:0019898 GO:0022607 GO:0023052 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031312 GO:0031505 GO:0031984 GO:0033036 GO:0033365 GO:0033554 GO:0034067 GO:0034613 GO:0034620 GO:0034641 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036290 GO:0042175 GO:0042221 GO:0042406 GO:0042493 GO:0042742 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045229 GO:0046483 GO:0046677 GO:0046777 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051179 GO:0051259 GO:0051260 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0065003 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0098542 GO:0098827 GO:0140096 GO:0140098 GO:1901360 GO:1901564 GO:1901615 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04140 ko04141 ko04210 ko04932 ko05010 map04140 map04141 map04210 map04932 map05010
Pfam Domains
Protein Families
Pkinase Ribonuc_2-5A

Protein Analysis

852

Amino Acids

96.05

Weight (kDa)

8.49

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011468)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17520
fragaria_vesca FvH4_1g10190 FvH4_1g10190 FvH4_1g10190 FvH4_1g10190 FvH4_1g10190
malus_domestica MD02G1114000.v1.1
prunus_persica Prupe.7G185000_v2.0.a1
pyrus_communis pycom02g08880
rosa_chinensis RchiOBHm_Chr2g0096971
rosa_laevigata RLG00000016688
rosa_multiflora Rmu_sc0001651.1_g000010
rosa_roxburghii Rroxscaffold_2G00145110
rosa_rugosa Rorug02G0062600 Rorug02G0062600
rosa_samantha Rh2AG110400 Rh2BG112200 Rh2CG114300 Rh2DG113400
rosa_wichuraiana Rw2G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2316
Acc36I ACCTGC 1 cut(s) 402
AccB1I GGYRCC 2 cut(s) 211, 1319
AccI GTMKAC 3 cut(s) 1351, 1960, 2472
AccII CGCG 2 cut(s) 107, 537
AccIII TCCGGA 1 cut(s) 2041
AclI AACGTT 1 cut(s) 1632
AcoI YGGCCR 1 cut(s) 2299
AcsI RAATTY 4 cut(s) 700, 1407, 1533, 1543
AcuI CTGAAG 1 cut(s) 798
AcvI CACGTG 1 cut(s) 1904
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 6 cut(s) 290, 299, 560, 1457, 1469, 2233
AfiI CCNNNNNNNGG 5 cut(s) 33, 503, 761, 1110, 1565
AflIII ACRYGT 3 cut(s) 1168, 1833, 1901
AgsI TTSAA 8 cut(s) 664, 684, 857, 1089, 1589, 1678, 2468, 2527
AjiI CACGTC 1 cut(s) 1393
AjnI CCWGG 6 cut(s) 32, 300, 562, 642, 1329, 2394
AluBI AGCT 9 cut(s) 1072, 1193, 1382, 1565, 1795, 1882, 2048, 2136, 2380
AluI AGCT 9 cut(s) 1072, 1193, 1382, 1565, 1795, 1882, 2048, 2136, 2380
Alw21I GWGCWC 2 cut(s) 2138, 2382
Alw26I GTCTC 3 cut(s) 697, 2140, 2157
AlwNI CAGNNNCTG 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 2548
Aor13HI TCCGGA 1 cut(s) 2041
AoxI GGCC 6 cut(s) 79, 99, 139, 765, 2093, 2299
ApeKI GCWGC 4 cut(s) 121, 283, 620, 1253
ApoI RAATTY 4 cut(s) 700, 1407, 1533, 1543
AsiSI GCGATCGC 1 cut(s) 119
Asp700I GAANNNNTTC 3 cut(s) 1881, 2511, 2522
AspA2I CCTAGG 1 cut(s) 2404
AspLEI GCGC 4 cut(s) 109, 254, 283, 631
AspS9I GGNCC 3 cut(s) 80, 765, 2408
AsuC2I CCSGG 1 cut(s) 2333
AsuHPI GGTGA 6 cut(s) 658, 1163, 1223, 1562, 1580, 1985
AvaI CYCGRG 1 cut(s) 2548
AvaII GGWCC 1 cut(s) 2408
AvrII CCTAGG 1 cut(s) 2404
BaeGI GKGCMC 1 cut(s) 2418
BalI TGGCCA 1 cut(s) 2301
BamHI GGATCC 1 cut(s) 2275
BanI GGYRCC 2 cut(s) 211, 1319
BanII GRGCYC 2 cut(s) 2138, 2382
BauI CACGAG 1 cut(s) 987
BbrPI CACGTG 1 cut(s) 1904
BbsI GAAGAC 3 cut(s) 479, 545, 1830
Bbv12I GWGCWC 2 cut(s) 2138, 2382
BbvI GCAGC 4 cut(s) 133, 270, 607, 1240
BccI CCATC 8 cut(s) 183, 347, 440, 843, 868, 1446, 2127, 2266
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 6 cut(s) 34, 302, 564, 644, 1331, 2396
BclI TGATCA 1 cut(s) 2428
BcnI CCSGG 1 cut(s) 2333
BcoDI GTCTC 3 cut(s) 697, 2140, 2157
BfaI CTAG 6 cut(s) 864, 1140, 1379, 2225, 2405, 2557
BfmI CTRYAG 4 cut(s) 1254, 1560, 2167, 2371
BfoI RGCGCY 2 cut(s) 284, 632
BfuAI ACCTGC 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 7 cut(s) 27, 90, 122, 284, 621, 1254, 1895
BlnI CCTAGG 1 cut(s) 2404
BlsI GCNGC 7 cut(s) 28, 91, 123, 285, 622, 1255, 1896
Bme1390I CCNGG 7 cut(s) 34, 302, 564, 644, 1331, 2333, 2396
Bme18I GGWCC 1 cut(s) 2408
BmeT110I CYCGRG 1 cut(s) 2548
BmgBI CACGTC 1 cut(s) 1393
BmgT120I GGNCC 3 cut(s) 80, 765, 2408
BmiI GGNNCC 8 cut(s) 73, 213, 306, 332, 766, 1321, 2277, 2450
BmrFI CCNGG 7 cut(s) 34, 302, 564, 644, 1331, 2333, 2396
BmsI GCATC 3 cut(s) 1433, 1818, 1956
BpiI GAAGAC 3 cut(s) 479, 545, 1830
BplI GAGNNNNNCTC 2 cut(s) 934, 966
BpmI CTGGAG 3 cut(s) 1352, 1517, 2152
Bpu10I CCTNAGC 2 cut(s) 186, 624
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 2333
Bsa29I ATCGAT 1 cut(s) 851
BsaAI YACGTR 2 cut(s) 337, 1904
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 6 cut(s) 67, 562, 1305, 2241, 2404, 2547
BsaWI WCCGGW 4 cut(s) 503, 754, 1547, 2041
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 209, 239
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 503, 761, 1110, 1565
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 1957, 2190, 2411
Bse3DI GCAATG 3 cut(s) 593, 936, 1321
BseAI TCCGGA 1 cut(s) 2041
BseBI CCWGG 6 cut(s) 34, 302, 564, 644, 1331, 2396
BseCI ATCGAT 1 cut(s) 851
BseDI CCNNGG 6 cut(s) 67, 562, 1305, 2241, 2404, 2547
BseGI GGATG 9 cut(s) 63, 175, 451, 1017, 1189, 1525, 1696, 1963, 2119
BseLI CCNNNNNNNGG 5 cut(s) 33, 503, 761, 1110, 1565
BseMI GCAATG 3 cut(s) 593, 936, 1321
BseMII CTCAG 6 cut(s) 423, 924, 1015, 1087, 1193, 1197
BseNI ACTGG 3 cut(s) 1957, 2190, 2411
BseRI GAGGAG 8 cut(s) 32, 41, 44, 47, 50, 158, 297, 557
BseSI GKGCMC 1 cut(s) 2418
BseXI GCAGC 4 cut(s) 133, 270, 607, 1240
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 1080, 1926
Bsh1236I CGCG 2 cut(s) 107, 537
Bsh1285I CGRYCG 3 cut(s) 119, 164, 1474
BshFI GGCC 6 cut(s) 81, 101, 141, 767, 2095, 2301
BshNI GGYRCC 2 cut(s) 211, 1319
BshVI ATCGAT 1 cut(s) 851
BsiEI CGRYCG 3 cut(s) 119, 164, 1474
BsiHKAI GWGCWC 2 cut(s) 2138, 2382
BsiHKCI CYCGRG 1 cut(s) 2548
BsiSI CCGG 8 cut(s) 138, 215, 249, 504, 755, 1548, 2042, 2332
BslFI GGGAC 4 cut(s) 1648, 1754, 1844, 2348
BslI CCNNNNNNNGG 5 cut(s) 33, 503, 761, 1110, 1565
BsmAI GTCTC 3 cut(s) 697, 2140, 2157
BsmFI GGGAC 4 cut(s) 1648, 1754, 1844, 2348
BsmI GAATGC 2 cut(s) 1141, 2282
BsnI GGCC 6 cut(s) 81, 101, 141, 767, 2095, 2301
BsoBI CYCGRG 1 cut(s) 2548
Bsp1286I GDGCHC 3 cut(s) 2138, 2382, 2418
Bsp13I TCCGGA 1 cut(s) 2041
Bsp1407I TGTACA 1 cut(s) 288
BspANI GGCC 6 cut(s) 81, 101, 141, 767, 2095, 2301
BspCNI CTCAG 6 cut(s) 422, 923, 1014, 1086, 1192, 1198
BspDI ATCGAT 1 cut(s) 851
BspEI TCCGGA 1 cut(s) 2041
BspFNI CGCG 2 cut(s) 107, 537
BspHI TCATGA 1 cut(s) 1387
BspLI GGNNCC 8 cut(s) 73, 213, 306, 332, 766, 1321, 2277, 2450
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 211, 1319
BsrDI GCAATG 3 cut(s) 593, 936, 1321
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 3 cut(s) 1957, 2190, 2411
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 6 cut(s) 67, 562, 1305, 2241, 2404, 2547
BssNAI GTATAC 1 cut(s) 2473
BssNI GRCGYC 1 cut(s) 428
BssSI CACGAG 1 cut(s) 987
BssT1I CCWWGG 2 cut(s) 1305, 2404
Bst1107I GTATAC 1 cut(s) 2473
Bst2BI CACGAG 1 cut(s) 987
Bst2UI CCWGG 6 cut(s) 34, 302, 564, 644, 1331, 2396
Bst4CI ACNGT 8 cut(s) 231, 268, 293, 460, 804, 1460, 1612, 2327
Bst6I CTCTTC 3 cut(s) 1109, 2027, 2496
BstACI GRCGYC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 288
BstBAI YACGTR 2 cut(s) 337, 1904
BstC8I GCNNGC 5 cut(s) 139, 784, 1817, 1869, 2485
BstDEI CTNAG 8 cut(s) 186, 409, 624, 910, 1001, 1073, 1179, 1206
BstDSI CCRYGG 1 cut(s) 2241
BstF5I GGATG 9 cut(s) 63, 175, 451, 1017, 1189, 1525, 1696, 1963, 2119
BstFNI CGCG 2 cut(s) 107, 537
BstH2I RGCGCY 2 cut(s) 284, 632
BstHHI GCGC 4 cut(s) 109, 254, 283, 631
BstMAI GTCTC 3 cut(s) 697, 2140, 2157
BstMCI CGRYCG 3 cut(s) 119, 164, 1474
BstMWI GCNNNNNNNGC 8 cut(s) 78, 98, 121, 147, 156, 626, 2243, 2350
BstNI CCWGG 6 cut(s) 34, 302, 564, 644, 1331, 2396
BstNSI RCATGY 3 cut(s) 964, 1172, 1837
BstSCI CCNGG 7 cut(s) 32, 300, 562, 642, 1329, 2331, 2394
BstSFI CTRYAG 4 cut(s) 1254, 1560, 2167, 2371
BstSLI GKGCMC 1 cut(s) 2418
BstUI CGCG 2 cut(s) 107, 537
BstV1I GCAGC 4 cut(s) 133, 270, 607, 1240
BstV2I GAAGAC 3 cut(s) 479, 545, 1830
BstX2I RGATCY 5 cut(s) 903, 913, 2017, 2053, 2275
BstXI CCANNNNNNTGG 1 cut(s) 1330
BstYI RGATCY 5 cut(s) 903, 913, 2017, 2053, 2275
BstZ17I GTATAC 1 cut(s) 2473
Bsu15I ATCGAT 1 cut(s) 851
BsuRI GGCC 6 cut(s) 81, 101, 141, 767, 2095, 2301
BsuTUI ATCGAT 1 cut(s) 851
BtgI CCRYGG 1 cut(s) 2241
BtrI CACGTC 1 cut(s) 1393
BtsCI GGATG 9 cut(s) 63, 175, 451, 1017, 1189, 1525, 1696, 1963, 2119
BtsI GCAGTG 4 cut(s) 793, 918, 1914, 2532
BtsIMutI CAGTG 8 cut(s) 240, 793, 918, 1914, 1950, 2332, 2418, 2532
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 5 cut(s) 139, 784, 1817, 1869, 2485
CaiI CAGNNNCTG 1 cut(s) 394
CciI TCATGA 1 cut(s) 1387
CfoI GCGC 4 cut(s) 109, 254, 283, 631
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 3 cut(s) 80, 765, 2408
ClaI ATCGAT 1 cut(s) 851
CseI GACGC 1 cut(s) 436
Csp6I GTAC 6 cut(s) 289, 298, 559, 1456, 1468, 2232
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviQI GTAC 6 cut(s) 289, 298, 559, 1456, 1468, 2232
DdeI CTNAG 8 cut(s) 186, 409, 624, 910, 1001, 1073, 1179, 1206
DraI TTTAAA 1 cut(s) 1402
EaeI YGGCCR 1 cut(s) 2299
Eam1104I CTCTTC 3 cut(s) 1109, 2027, 2496
EarI CTCTTC 3 cut(s) 1109, 2027, 2496
EciI GGCGGA 1 cut(s) 821
Ecl136II GAGCTC 2 cut(s) 2136, 2380
Eco130I CCWWGG 2 cut(s) 1305, 2404
Eco24I GRGCYC 2 cut(s) 2138, 2382
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 2408
Eco53kI GAGCTC 2 cut(s) 2136, 2380
Eco57I CTGAAG 1 cut(s) 798
Eco72I CACGTG 1 cut(s) 1904
Eco88I CYCGRG 1 cut(s) 2548
EcoICRI GAGCTC 2 cut(s) 2136, 2380
EcoO109I RGGNCCY 1 cut(s) 765
EcoRII CCWGG 6 cut(s) 32, 300, 562, 642, 1329, 2394
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 1305, 2404
EcoT38I GRGCYC 2 cut(s) 2138, 2382
ErhI CCWWGG 2 cut(s) 1305, 2404
FaqI GGGAC 4 cut(s) 1648, 1754, 1844, 2348
FbaI TGATCA 1 cut(s) 2428
FblI GTMKAC 3 cut(s) 1351, 1960, 2472
Fnu4HI GCNGC 7 cut(s) 27, 90, 122, 284, 621, 1254, 1895
FokI GGATG 9 cut(s) 50, 162, 458, 1004, 1196, 1532, 1703, 1950, 2106
FriOI GRGCYC 2 cut(s) 2138, 2382
Fsp4HI GCNGC 7 cut(s) 27, 90, 122, 284, 621, 1254, 1895
FspBI CTAG 6 cut(s) 864, 1140, 1379, 2225, 2405, 2557
GlaI GCGC 4 cut(s) 108, 253, 282, 630
GluI GCNGC 7 cut(s) 27, 90, 122, 284, 621, 1254, 1895
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 3 cut(s) 1352, 1517, 2152
HaeII RGCGCY 2 cut(s) 284, 632
HaeIII GGCC 6 cut(s) 81, 101, 141, 767, 2095, 2301
HapII CCGG 8 cut(s) 138, 215, 249, 504, 755, 1548, 2042, 2332
HgaI GACGC 1 cut(s) 436
HhaI GCGC 4 cut(s) 109, 254, 283, 631
Hin1I GRCGYC 1 cut(s) 428
Hin6I GCGC 4 cut(s) 107, 252, 281, 629
HinP1I GCGC 4 cut(s) 107, 252, 281, 629
HincII GTYRAC 2 cut(s) 1352, 1608
HindII GTYRAC 2 cut(s) 1352, 1608
HindIII AAGCTT 3 cut(s) 1191, 1793, 2046
HpaII CCGG 8 cut(s) 138, 215, 249, 504, 755, 1548, 2042, 2332
HphI GGTGA 6 cut(s) 658, 1163, 1223, 1562, 1580, 1985
Hpy166II GTNNAC 7 cut(s) 238, 421, 1277, 1352, 1608, 1961, 2473
Hpy8I GTNNAC 7 cut(s) 238, 421, 1277, 1352, 1608, 1961, 2473
HpyAV CCTTC 7 cut(s) 501, 658, 683, 1104, 1110, 1340, 2414
HpyCH4III ACNGT 8 cut(s) 231, 268, 293, 460, 804, 1460, 1612, 2327
HpyCH4IV ACGT 6 cut(s) 336, 707, 1392, 1632, 1903, 1987
HpyF10VI GCNNNNNNNGC 8 cut(s) 78, 98, 121, 147, 156, 626, 2243, 2350
HpyF3I CTNAG 8 cut(s) 186, 409, 624, 910, 1001, 1073, 1179, 1206
HpySE526I ACGT 6 cut(s) 336, 707, 1392, 1632, 1903, 1987
Hsp92I GRCGYC 1 cut(s) 428
HspAI GCGC 4 cut(s) 107, 252, 281, 629
Kpn2I TCCGGA 1 cut(s) 2041
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 2428
LmnI GCTCC 7 cut(s) 77, 171, 310, 544, 1498, 2133, 2385
Lsp1109I GCAGC 4 cut(s) 133, 270, 607, 1240
LweI GCATC 3 cut(s) 1433, 1818, 1956
MaeI CTAG 6 cut(s) 864, 1140, 1379, 2225, 2405, 2557
MaeII ACGT 6 cut(s) 336, 707, 1392, 1632, 1903, 1987
MaeIII GTNAC 6 cut(s) 225, 454, 646, 984, 2078, 2171
MflI RGATCY 5 cut(s) 903, 913, 2017, 2053, 2275
MhlI GDGCHC 3 cut(s) 2138, 2382, 2418
MlsI TGGCCA 1 cut(s) 2301
MluNI TGGCCA 1 cut(s) 2301
MlyI GAGTC 8 cut(s) 760, 837, 991, 1126, 2142, 2355, 2547, 2552
MmeI TCCRAC 4 cut(s) 442, 629, 861, 1100
Mox20I TGGCCA 1 cut(s) 2301
MroI TCCGGA 1 cut(s) 2041
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 3 cut(s) 1881, 2511, 2522
MscI TGGCCA 1 cut(s) 2301
MseI TTAA 9 cut(s) 573, 582, 1059, 1401, 1635, 1745, 1766, 1770, 2072
MslI CAYNNNNRTG 4 cut(s) 339, 684, 1022, 1716
Msp20I TGGCCA 1 cut(s) 2301
MspI CCGG 8 cut(s) 138, 215, 249, 504, 755, 1548, 2042, 2332
MspR9I CCNGG 7 cut(s) 34, 302, 564, 644, 1331, 2333, 2396
Mva1269I GAATGC 2 cut(s) 1141, 2282
MvaI CCWGG 6 cut(s) 34, 302, 564, 644, 1331, 2396
MvnI CGCG 2 cut(s) 107, 537
MwoI GCNNNNNNNGC 8 cut(s) 78, 98, 121, 147, 156, 626, 2243, 2350
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 2333
NgoMIV GCCGGC 1 cut(s) 137
NlaIV GGNNCC 8 cut(s) 73, 213, 306, 332, 766, 1321, 2277, 2450
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 4 cut(s) 646, 984, 2078, 2171
NspI RCATGY 3 cut(s) 964, 1172, 1837
PacI TTAATTAA 1 cut(s) 1770
PagI TCATGA 1 cut(s) 1387
PciI ACATGT 2 cut(s) 1168, 1833
PcsI WCGNNNNNNNCGW 1 cut(s) 1984
PctI GAATGC 2 cut(s) 1141, 2282
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 3 cut(s) 1881, 2511, 2522
PfeI GAWTC 4 cut(s) 245, 1085, 1414, 1618
PflFI GACNNNGTC 1 cut(s) 2327
PfoI TCCNGGA 3 cut(s) 1329, 2331, 2394
PkrI GCNGC 7 cut(s) 28, 91, 123, 285, 622, 1255, 1896
Ple19I CGATCG 3 cut(s) 119, 164, 1474
PleI GAGTC 8 cut(s) 759, 836, 991, 1125, 2142, 2354, 2547, 2551
PmaCI CACGTG 1 cut(s) 1904
PmlI CACGTG 1 cut(s) 1904
PpsI GAGTC 8 cut(s) 759, 836, 991, 1125, 2142, 2354, 2547, 2551
Ppu21I YACGTR 2 cut(s) 337, 1904
PscI ACATGT 2 cut(s) 1168, 1833
PsiI TTATAA 1 cut(s) 2316
Psp124BI GAGCTC 2 cut(s) 2138, 2382
Psp1406I AACGTT 1 cut(s) 1632
Psp6I CCWGG 6 cut(s) 32, 300, 562, 642, 1329, 2394
PspCI CACGTG 1 cut(s) 1904
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 6 cut(s) 32, 300, 562, 642, 1329, 2394
PspN4I GGNNCC 8 cut(s) 73, 213, 306, 332, 766, 1321, 2277, 2450
PspPI GGNCC 3 cut(s) 80, 765, 2408
PstI CTGCAG 1 cut(s) 1258
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 5 cut(s) 903, 913, 2017, 2053, 2275
PsyI GACNNNGTC 1 cut(s) 2327
PvuI CGATCG 3 cut(s) 119, 164, 1474
RgaI GCGATCGC 1 cut(s) 119
RsaI GTAC 6 cut(s) 290, 299, 560, 1457, 1469, 2233
RsaNI GTAC 6 cut(s) 289, 298, 559, 1456, 1468, 2232
RseI CAYNNNNRTG 4 cut(s) 339, 684, 1022, 1716
SacI GAGCTC 2 cut(s) 2138, 2382
SalI GTCGAC 1 cut(s) 1350
SaqAI TTAA 9 cut(s) 573, 582, 1059, 1401, 1635, 1745, 1766, 1770, 2072
SatI GCNGC 7 cut(s) 27, 90, 122, 284, 621, 1254, 1895
Sau96I GGNCC 3 cut(s) 80, 765, 2408
SchI GAGTC 8 cut(s) 760, 837, 991, 1126, 2142, 2355, 2547, 2552
ScrFI CCNGG 7 cut(s) 34, 302, 564, 644, 1331, 2333, 2396
SduI GDGCHC 3 cut(s) 2138, 2382, 2418
SfaAI GCGATCGC 1 cut(s) 119
SfaNI GCATC 3 cut(s) 1433, 1818, 1956
SfcI CTRYAG 4 cut(s) 1254, 1560, 2167, 2371
SgfI GCGATCGC 1 cut(s) 119
SinI GGWCC 1 cut(s) 2408
SmiMI CAYNNNNRTG 4 cut(s) 339, 684, 1022, 1716
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SspI AATATT 1 cut(s) 1999
SspMI CTAG 6 cut(s) 864, 1140, 1379, 2225, 2405, 2557
SstI GAGCTC 2 cut(s) 2138, 2382
StyD4I CCNGG 7 cut(s) 32, 300, 562, 642, 1329, 2331, 2394
StyI CCWWGG 2 cut(s) 1305, 2404
TaaI ACNGT 8 cut(s) 231, 268, 293, 460, 804, 1460, 1612, 2327
TaiI ACGT 6 cut(s) 339, 710, 1395, 1635, 1906, 1990
TaqI TCGA 6 cut(s) 467, 851, 1351, 1474, 1983, 2065
TatI WGTACW 1 cut(s) 288
TauI GCSGC 3 cut(s) 29, 92, 1897
TfiI GAWTC 4 cut(s) 245, 1085, 1414, 1618
Tru1I TTAA 9 cut(s) 573, 582, 1059, 1401, 1635, 1745, 1766, 1770, 2072
Tru9I TTAA 9 cut(s) 573, 582, 1059, 1401, 1635, 1745, 1766, 1770, 2072
TscAI CASTG 8 cut(s) 247, 793, 925, 1914, 1957, 2332, 2418, 2539
TseFI GTSAC 4 cut(s) 646, 984, 2078, 2171
TseI GCWGC 4 cut(s) 121, 283, 620, 1253
Tsp45I GTSAC 4 cut(s) 646, 984, 2078, 2171
TspRI CASTG 8 cut(s) 247, 793, 925, 1914, 1957, 2332, 2418, 2539
Tth111I GACNNNGTC 1 cut(s) 2327
VpaK11BI GGWCC 1 cut(s) 2408
XapI RAATTY 4 cut(s) 700, 1407, 1533, 1543
XbaI TCTAGA 1 cut(s) 863
XceI RCATGY 3 cut(s) 964, 1172, 1837
XmaJI CCTAGG 1 cut(s) 2404
XmiI GTMKAC 3 cut(s) 1351, 1960, 2472
XmnI GAANNNNTTC 3 cut(s) 1881, 2511, 2522
XspI CTAG 6 cut(s) 864, 1140, 1379, 2225, 2405, 2557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.