Rmu_sc0001689.1_g000023

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001689.1
OG0018063
Physical Location & Seq
Reverse (-)
117478 .. 117768
291 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
atgttgattttgcaggaagaagtatacaaagataataggtggaagttgatcgaggaggatctgaaaaatgtgattgatgcagagtcactagagactacacttgaattgattgatgacatccaacgattaggtttgggacaccgatttgaggccagtataactgaagcccttgataaagttttgaagaatcttgaccaaataacagacgaggatactccaagtctgtacctcactgctctcagcttcagactccttagacaacatgggtttcaagtctcccaaggtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

96

Amino Acids

11.13

Weight (kDa)

4.61

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 17 - 94 1.2e-20 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AclWI GGATC 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 183, 229
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 104, 184, 272
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 86, 280
AlwI GGATC 1 cut(s) 66
AoxI GGCC 1 cut(s) 150
BciVI GTATCC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 86, 280
BfaI CTAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 86, 280
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 48, 58
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 2 cut(s) 48, 58
BssNAI GTATAC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 280
Bst1107I GTATAC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 239, 254
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 2 cut(s) 51, 61
BstMAI GTCTC 2 cut(s) 86, 280
BstMBI GATC 2 cut(s) 48, 58
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZ17I GTATAC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 152, 167, 243
CviKI_1 RGCY 3 cut(s) 152, 167, 243
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 239, 254
DpnI GATC 2 cut(s) 50, 60
DpnII GATC 2 cut(s) 48, 58
Eco130I CCWWGG 1 cut(s) 280
Eco57I CTGAAG 2 cut(s) 183, 229
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 1 cut(s) 266
FaiI YATR 3 cut(s) 25, 158, 264
FaqI GGGAC 1 cut(s) 150
FatI CATG 1 cut(s) 262
FblI GTMKAC 1 cut(s) 24
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 1 cut(s) 266
HinfI GANTC 3 cut(s) 83, 187, 249
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 63, 248
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 13, 80
HpyF3I CTNAG 2 cut(s) 239, 254
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 2 cut(s) 48, 58
LpnPI CCDG 1 cut(s) 166
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 84
MalI GATC 2 cut(s) 50, 60
MboI GATC 2 cut(s) 48, 58
MboII GAAGA 2 cut(s) 29, 196
MflI RGATCY 1 cut(s) 58
MluCI AATT 1 cut(s) 104
MlyI GAGTC 2 cut(s) 92, 243
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 5 cut(s) 46, 49, 142, 202, 239
NdeII GATC 2 cut(s) 48, 58
NlaIII CATG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 187
PleI GAGTC 2 cut(s) 91, 243
PpsI GAGTC 2 cut(s) 91, 243
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 48, 58
SchI GAGTC 2 cut(s) 92, 243
SetI ASST 5 cut(s) 41, 133, 231, 245, 286
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 1 cut(s) 104
SspMI CTAG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 280
TaqI TCGA 1 cut(s) 51
TasI AATT 1 cut(s) 104
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 84
TspRI CASTG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.