Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0014035

Physical Location & Seq

Genomic Coordinates Forward (+)

90401 .. 91950

Gene Structure 1550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgattaacatgagaggcttaagtatcacctctaccctcattattcttccagacaactacttcaatctcaccatttctaaattgctaataggatcctcgatcaaaaacacagctatgggtgcagtgggtgcagaagtagtgttggtggatgaaatcccttttccttcagtgatcacaacctccaagccattagctcttctgggtcatgggatcacagacattgagatacactttctgcaaatcaagttcacagcaattggggtttacttggaccctgagattgtcggacatctgcagaaatggaagaccaagaaaggaactgagcttgcagaagatgatgacttctttgatgctcttatttctgctcctgttgagaaatttctaagagttgtggtgatcaaggagatcaaagggtctcaatatggggtgcagcttgagagttcagtgagggataggttggcagctgatgacaaatatgaggaagaggaggaggaagccttggagaagattgttgagttcttccaatcaaaatattttaagaaggattccatcatcacatttcattttccagctacttcccctacagctgagattgtgtttactgctgaagggaaggaggagtcgaagatcaaagtggaaaatgccaatgttgtcgagacgatccagaaatggtatttgggtggaacaaaaggagtttctccttcaaccatatcttccttggctaacacactctctgctgaattgaccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Chalcone

Protein Analysis

250

Amino Acids

27.63

Weight (kDa)

5.01

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	49 - 246	2.4e-33	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05270 AT5G05270
fragaria_vesca	FvH4_7g25890 FvH4_7g25890
malus_domestica	MD01G1167300.v1.1 MD07G1233400.v1.1
prunus_persica	Prupe.2G263900_v2.0.a1
pyrus_communis	pycom01g18040
rosa_laevigata	RLG00000026916
rosa_multiflora	Rmu_sc0001755.1_g000020
rosa_roxburghii	Rroxscaffold_4G00285160
rosa_rugosa	Rorug01G0370200
rosa_samantha	Rh1AG378700 Rh1BG342000 Rh1CG355600 Rh1DG373100
rosa_wichuraiana	Rw1G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	87, 100, 218, 655
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	2 cut(s)	150, 627
AflII	CTTAAG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	64, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AluBI	AGCT	7 cut(s)	113, 194, 325, 433, 464, 572, 587
AluI	AGCT	7 cut(s)	113, 194, 325, 433, 464, 572, 587
Alw26I	GTCTC	2 cut(s)	420, 650
AlwI	GGATC	4 cut(s)	87, 100, 218, 655
ApeKI	GCWGC	2 cut(s)	430, 461
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	19, 61, 406
AvaII	GGWCC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	442, 473
BccI	CCATC	1 cut(s)	557
BclI	TGATCA	2 cut(s)	171, 396
BcoDI	GTCTC	2 cut(s)	420, 650
BfmI	CTRYAG	2 cut(s)	293, 582
BfrI	CTTAAG	1 cut(s)	19
BisI	GCNGC	2 cut(s)	431, 462
BlsI	GCNGC	2 cut(s)	432, 463
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	94, 273
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	498, 717
BseDI	CCNNGG	2 cut(s)	498, 717
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	267, 312, 579
BseRI	GAGGAG	3 cut(s)	500, 503, 632
BseXI	GCAGC	2 cut(s)	442, 473
BsgI	GTGCAG	3 cut(s)	141, 150, 449
BsmAI	GTCTC	2 cut(s)	420, 650
BsmBI	CGTCTC	1 cut(s)	650
Bso31I	GGTCTC	1 cut(s)	420
Bsp143I	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
BspCNI	CTCAG	3 cut(s)	268, 313, 580
BspLI	GGNNCC	2 cut(s)	94, 273
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	4 cut(s)	87, 100, 218, 655
BspQI	GCTCTTC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	498, 717
BssMI	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
BssT1I	CCWWGG	2 cut(s)	498, 717
Bst6I	CTCTTC	2 cut(s)	201, 477
BstAFI	CTTAAG	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	276, 321, 383, 588
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	8 cut(s)	95, 102, 174, 213, 399, 408, 630, 663
BstMAI	GTCTC	2 cut(s)	420, 650
BstMBI	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 128
BstSFI	CTRYAG	2 cut(s)	293, 582
BstV1I	GCAGC	2 cut(s)	442, 473
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	129
BtsIMutI	CAGTG	3 cut(s)	129, 174, 450
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	2 cut(s)	10, 206
DdeI	CTNAG	4 cut(s)	276, 321, 383, 588
DpnI	GATC	8 cut(s)	94, 101, 173, 212, 398, 407, 629, 662
DpnII	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
Eam1104I	CTCTTC	2 cut(s)	201, 477
EarI	CTCTTC	2 cut(s)	201, 477
Eco130I	CCWWGG	2 cut(s)	498, 717
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	150, 627
EcoT14I	CCWWGG	2 cut(s)	498, 717
ErhI	CCWWGG	2 cut(s)	498, 717
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	2 cut(s)	13, 209
FaiI	YATR	6 cut(s)	11, 116, 207, 423, 477, 710
FatI	CATG	2 cut(s)	9, 205
FbaI	TGATCA	2 cut(s)	171, 396
Fnu4HI	GCNGC	2 cut(s)	431, 462
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	431, 462
GluI	GCNGC	2 cut(s)	431, 462
Hin1II	CATG	2 cut(s)	13, 209
HinfI	GANTC	2 cut(s)	545, 620
HphI	GGTGA	3 cut(s)	19, 61, 406
Hpy166II	GTNNAC	3 cut(s)	249, 265, 600
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	50, 655, 664
Hpy8I	GTNNAC	3 cut(s)	249, 265, 600
HpyAV	CCTTC	5 cut(s)	174, 535, 602, 607, 711
HpyCH4V	TGCA	6 cut(s)	122, 131, 238, 295, 329, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 128
HpyF3I	CTNAG	4 cut(s)	276, 321, 383, 588
Hsp92II	CATG	2 cut(s)	13, 209
Ksp22I	TGATCA	2 cut(s)	171, 396
Kzo9I	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	63, 185, 288, 381, 582, 677
Lsp1109I	GCAGC	2 cut(s)	442, 473
LweI	GCATC	1 cut(s)	340
MalI	GATC	8 cut(s)	94, 101, 173, 212, 398, 407, 629, 662
MboI	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
MboII	GAAGA	9 cut(s)	38, 188, 316, 344, 494, 511, 517, 637, 705
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	4 cut(s)	80, 255, 377, 740
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	1 cut(s)	265
MseI	TTAA	3 cut(s)	6, 20, 537
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	2 cut(s)	464, 587
MspCI	CTTAAG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	119, 128
NdeII	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
NlaIII	CATG	2 cut(s)	13, 209
NlaIV	GGNNCC	2 cut(s)	94, 273
PciSI	GCTCTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	432, 463
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	94, 273
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	92
PvuII	CAGCTG	2 cut(s)	464, 587
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	6, 20, 537
SatI	GCNGC	2 cut(s)	431, 462
Sau3AI	GATC	8 cut(s)	92, 99, 171, 210, 396, 405, 627, 660
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	629
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	293, 582
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	19, 434
SmoI	CTYRAG	2 cut(s)	19, 434
Sse9I	AATT	4 cut(s)	80, 255, 377, 740
SspI	AATATT	1 cut(s)	533
StyI	CCWWGG	2 cut(s)	498, 717
TaqI	TCGA	3 cut(s)	98, 623, 654
TasI	AATT	4 cut(s)	80, 255, 377, 740
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	6, 20, 537
Tru9I	TTAA	3 cut(s)	6, 20, 537
TscAI	CASTG	3 cut(s)	129, 174, 450
TseI	GCWGC	2 cut(s)	430, 461
TspDTI	ATGAA	2 cut(s)	165, 551
TspRI	CASTG	3 cut(s)	129, 174, 450
Vha464I	CTTAAG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.