Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0016772

Physical Location & Seq

Genomic Coordinates Reverse (-)

17022 .. 17582

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgatggggatcactggagtgtgctctaggttgattggtgacttggttcatgcctttcatggagtctcaagttgctcaatcacagaagcccgaattgatgaagattgcaagccacaaagtgcaatcaaagttgacgagtctatggcaagggcactcatcactgtgtttgggatggaaaccaatggcagaataaagaaggagaaggccaagagagtggtggagaatcttgggttgatatgttacgatgaggaagacgaagacaagtcaaagttcgacttgccgggggataatgatcatgatgaagtgccagtggaagaagttcttggtgagttggggaatgatgatggttctaagagaaatgaaatgctgctcgaagcgttcaagattttcgatgaggatggagacgggtttatagaagctgtggagttaaagagggtgttggaatgtttagggttggataatgggtgggatatggctcagattgagaagatggtgaaggttgtggatttgaatttggatgggaaggttgattttagtgagtttgaattaatgatgggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0043167 GO:0043169 GO:0046686 GO:0046872 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

186

Amino Acids

20.7

Weight (kDa)

4.36

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36371
malus_domestica	MD08G1123200.v1.1 MD15G1102200.v1.1
prunus_persica	Prupe.1G455200_v2.0.a1
pyrus_communis	pycom15g09340
rosa_laevigata	RLG00000010883
rosa_multiflora	Rmu_sc0001809.1_g000003
rosa_roxburghii	Rroxscaffold_7G00162730
rosa_rugosa	Rorug06G0340900
rosa_samantha	Rh6AG453100 Rh6BG448700 Rh6CG466800 Rh6DG453500
rosa_wichuraiana	Rw6G039480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	119
AgsI	TTSAA	3 cut(s)	382, 511, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AleI	CACNNNNGTG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	70, 396
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	511
AseI	ATTAAT	1 cut(s)	548
Asp700I	GAANNNNTTC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	50, 338, 505
BaeGI	GKGCMC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	258, 264
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	6 cut(s)	166, 338, 392, 484, 512, 547
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	70, 396
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	282
BpiI	GAAGAC	2 cut(s)	258, 264
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	282
BsaBI	GATNNNNATC	2 cut(s)	8, 291
BsaJI	CCNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	19, 308
Bse8I	GATNNNNATC	2 cut(s)	8, 291
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	3 cut(s)	177, 403, 523
BseJI	GATNNNNATC	2 cut(s)	8, 291
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	19, 308
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	354
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	70, 396
BsmBI	CGTCTC	1 cut(s)	396
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	26, 154
Bsp143I	GATC	2 cut(s)	9, 292
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	19, 308
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	9, 292
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	351, 477
BstF5I	GGATG	3 cut(s)	177, 403, 523
BstKTI	GATC	2 cut(s)	12, 295
BstMAI	GTCTC	2 cut(s)	70, 396
BstMBI	GATC	2 cut(s)	9, 292
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	2 cut(s)	258, 264
BstXI	CCANNNNNNTGG	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	177, 403, 523
BtsIMutI	CAGTG	3 cut(s)	12, 159, 315
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	295
CviAII	CATG	3 cut(s)	50, 59, 296
CviJI	RGCY	5 cut(s)	89, 112, 206, 419, 476
CviKI_1	RGCY	5 cut(s)	89, 112, 206, 419, 476
DdeI	CTNAG	2 cut(s)	351, 477
DpnI	GATC	2 cut(s)	11, 294
DpnII	GATC	2 cut(s)	9, 292
DraIII	CACNNNGTG	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	3 cut(s)	53, 62, 299
FaiI	YATR	7 cut(s)	51, 60, 143, 238, 297, 413, 473
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 306, 338
FatI	CATG	3 cut(s)	49, 58, 295
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	3 cut(s)	184, 410, 530
Fsp4HI	GCNGC	1 cut(s)	368
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	3 cut(s)	53, 62, 299
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	63, 137, 223
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	3 cut(s)	50, 338, 505
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	2 cut(s)	296, 382
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	4 cut(s)	190, 196, 490, 517
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	108, 122
HpyF3I	CTNAG	2 cut(s)	351, 477
Hsp92II	CATG	3 cut(s)	53, 62, 299
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	9, 292
LpnPI	CCDG	2 cut(s)	294, 321
Lsp1109I	GCAGC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	38, 239
MalI	GATC	2 cut(s)	11, 294
MboI	GATC	2 cut(s)	9, 292
MboII	GAAGA	5 cut(s)	113, 263, 269, 326, 499
MhlI	GDGCHC	2 cut(s)	26, 154
MluCI	AATT	3 cut(s)	93, 511, 545
MlyI	GAGTC	2 cut(s)	72, 146
MmeI	TCCRAC	2 cut(s)	420, 435
MnlI	CCTC	3 cut(s)	241, 388, 426
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	428, 548
MslI	CAYNNNNRTG	2 cut(s)	17, 161
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	282
NciI	CCSGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	9, 292
NlaIII	CATG	3 cut(s)	53, 62, 299
NmuCI	GTSAC	1 cut(s)	38
OliI	CACNNNNGTG	1 cut(s)	17
PagI	TCATGA	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	2 cut(s)	71, 145
PpsI	GAGTC	2 cut(s)	71, 145
PshBI	ATTAAT	1 cut(s)	548
RseI	CAYNNNNRTG	2 cut(s)	17, 161
SaqAI	TTAA	2 cut(s)	428, 548
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	9, 292
SchI	GAGTC	2 cut(s)	72, 146
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	26, 154
SetI	ASST	4 cut(s)	32, 421, 501, 528
SmiMI	CAYNNNNRTG	2 cut(s)	17, 161
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	3 cut(s)	93, 511, 545
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	3 cut(s)	273, 372, 390
TasI	AATT	3 cut(s)	93, 511, 545
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	428, 548
Tru9I	TTAA	2 cut(s)	428, 548
TscAI	CASTG	3 cut(s)	19, 166, 315
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	5 cut(s)	38, 47, 114, 315, 375
TspRI	CASTG	3 cut(s)	19, 166, 315
VspI	ATTAAT	1 cut(s)	548
XapI	RAATTY	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.