Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001839.1

Orthogroup ID

OG0007211

Physical Location & Seq

Genomic Coordinates Forward (+)

144671 .. 149585

Gene Structure 4915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgaacgcttcaattatcgacccactgcaaggagatttcccagaagtgatagaggagtatttggaacatggggttatgaaatgcattgccttcaatcgccgtggtactcttcttgctgctggctgctctgatggtaattgcataatatgggattttgagaccaggggcattgctaaggagctccgtgataaagactgtgttgctgccataactagtgtatgttggtcaaaatatggtcatcgcgttcttgtgtctgcagctgacaaatcgttgacactatgggatgttgtcagtggtgagaagataacaagaacaatgctgcaacaaacccctctacaagctcgaggcaatgtggataaaaagaaggcacttgagtatttgaacctcattctactatgccttgatgaaattgttgatggcagcattgttcttgagaccgattcaaatgttatagcaagcaaggttgcgagtcatagtattgattctggagctccgttatctgagcaggtatatcaatttctcttctcgcatgccttccctatccccgtgacaatatctttcataagtctaaatcagacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008213 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019538 GO:0022414 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034708 GO:0034968 GO:0035064 GO:0035097 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043627 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044666 GO:0048188 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051276 GO:0051568 GO:0051716 GO:0061458 GO:0070013 GO:0071339 GO:0071704 GO:0071840 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

193

Amino Acids

21.25

Weight (kDa)

5.05

Isoelectric Point (pI)

24.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_TEP1_2nd	PF25047	13 - 116	4.9e-08	TEP-1 second beta-propeller
Beta-prop_EML	PF23409	16 - 116	8.8e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR5	PF25175	25 - 105	3.1e-12	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	25 - 104	8.6e-11	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	25 - 105	5.5e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	25 - 104	3.6e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	26 - 110	1.9e-12	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	26 - 105	1e-06	WDR36/Utp21 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21060
fragaria_vesca	FvH4_2g10510 FvH4_2g10510 FvH4_2g10510 FvH4_2g10510
malus_domestica	MD02G1259400.v1.1 MD07G1061200.v1.1
prunus_persica	Prupe.5G058900_v2.0.a1 Prupe.5G058900_v2.0.a1
pyrus_communis	pycom02g22080
rosa_chinensis	RchiOBHm_Chr6g0268021
rosa_laevigata	RLG00000013939
rosa_multiflora	Rmu_sc0001839.1_g000031 Rmu_sc0003304.1_g000001 Rmu_sc0003304.1_g000039 Rmu_sc0004529.1_g000038
rosa_roxburghii	Rroxscaffold_7G00200120 Rroxscaffold_7G00200140
rosa_rugosa	Rorug06G0038800
rosa_samantha	Rh6AG158100 Rh6BG162100 Rh6CG156300 Rh6DG147700
rosa_wichuraiana	Rw0G021300 Rw6G013760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccII	CGCG	1 cut(s)	243
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	12, 94, 382, 444
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	181, 260, 341, 491
AluI	AGCT	4 cut(s)	181, 260, 341, 491
Alw21I	GWGCWC	2 cut(s)	183, 493
Alw26I	GTCTC	2 cut(s)	152, 428
Ama87I	CYCGRG	1 cut(s)	342
ApeKI	GCWGC	6 cut(s)	116, 123, 203, 257, 319, 420
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	183, 493
Bbv12I	GWGCWC	2 cut(s)	183, 493
BbvI	GCAGC	6 cut(s)	103, 110, 190, 269, 306, 432
BccI	CCATC	2 cut(s)	125, 410
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	152, 428
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	6 cut(s)	117, 124, 204, 258, 320, 421
BlsI	GCNGC	6 cut(s)	118, 125, 205, 259, 321, 422
Bme1390I	CCNGG	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	392, 452
BsaI	GGTCTC	2 cut(s)	152, 428
BsaJI	CCNNGG	2 cut(s)	100, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	3 cut(s)	84, 168, 355
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	100, 162
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	3 cut(s)	84, 168, 355
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	6 cut(s)	103, 110, 190, 269, 306, 432
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	183, 493
BsiHKCI	CYCGRG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	152, 428
Bso31I	GGTCTC	2 cut(s)	152, 428
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	183, 493
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	496
BspTNI	GGTCTC	2 cut(s)	152, 428
BsrDI	GCAATG	3 cut(s)	84, 168, 355
BssECI	CCNNGG	2 cut(s)	100, 162
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	114, 527
BstC8I	GCNNGC	3 cut(s)	121, 457, 531
BstDEI	CTNAG	2 cut(s)	174, 501
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	152, 428
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	255
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	103, 110, 190, 269, 306, 432
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 298
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	121, 457, 531
Csp6I	GTAC	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	3 cut(s)	68, 530, 579
CviJI	RGCY	5 cut(s)	123, 181, 260, 341, 491
CviKI_1	RGCY	5 cut(s)	123, 181, 260, 341, 491
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	174, 501
Eam1104I	CTCTTC	2 cut(s)	114, 527
EarI	CTCTTC	2 cut(s)	114, 527
Ecl136II	GAGCTC	2 cut(s)	181, 491
Eco24I	GRGCYC	2 cut(s)	183, 493
Eco31I	GGTCTC	2 cut(s)	152, 428
Eco53kI	GAGCTC	2 cut(s)	181, 491
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	2 cut(s)	181, 491
EcoRII	CCWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	183, 493
FaeI	CATG	3 cut(s)	71, 533, 582
FatI	CATG	3 cut(s)	67, 529, 578
Fnu4HI	GCNGC	6 cut(s)	117, 124, 204, 258, 320, 421
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	183, 493
Fsp4HI	GCNGC	6 cut(s)	117, 124, 204, 258, 320, 421
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	6 cut(s)	117, 124, 204, 258, 320, 421
GsuI	CTGGAG	1 cut(s)	507
Hin1II	CATG	3 cut(s)	71, 533, 582
HincII	GTYRAC	1 cut(s)	273
HindII	GTYRAC	1 cut(s)	273
HinfI	GANTC	3 cut(s)	440, 469, 482
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	3 cut(s)	130, 502, 576
Hpy188III	TCNNGA	2 cut(s)	431, 486
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	100, 358, 544
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	5 cut(s)	28, 84, 141, 257, 322
HpyF3I	CTNAG	2 cut(s)	174, 501
Hsp92II	CATG	3 cut(s)	71, 533, 582
LmnI	GCTCC	4 cut(s)	178, 186, 488, 496
LpnPI	CCDG	6 cut(s)	54, 105, 148, 175, 471, 491
Lsp1109I	GCAGC	6 cut(s)	103, 110, 190, 269, 306, 432
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	547
MboII	GAAGA	3 cut(s)	101, 313, 514
MhlI	GDGCHC	2 cut(s)	183, 493
MluCI	AATT	4 cut(s)	12, 136, 408, 515
MlyI	GAGTC	1 cut(s)	478
MnlI	CCTC	4 cut(s)	46, 338, 342, 395
Mph1103I	ATGCAT	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	243
NlaIII	CATG	3 cut(s)	71, 533, 582
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	440, 482
PkrI	GCNGC	6 cut(s)	118, 125, 205, 259, 321, 422
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp124BI	GAGCTC	2 cut(s)	183, 493
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspXI	VCTCGAGB	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SacI	GAGCTC	2 cut(s)	183, 493
SatI	GCNGC	6 cut(s)	117, 124, 204, 258, 320, 421
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	183, 493
SetI	ASST	7 cut(s)	183, 262, 343, 387, 465, 493, 510
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	342
SmlI	CTYRAG	3 cut(s)	342, 371, 431
SmoI	CTYRAG	3 cut(s)	342, 371, 431
SpeI	ACTAGT	1 cut(s)	212
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	4 cut(s)	12, 136, 408, 515
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	2 cut(s)	183, 493
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	2 cut(s)	18, 343
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	12, 136, 408, 515
TfiI	GAWTC	2 cut(s)	440, 482
TscAI	CASTG	2 cut(s)	30, 298
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	6 cut(s)	116, 123, 203, 257, 319, 420
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	17, 92, 420, 550
TspGWI	ACGGA	2 cut(s)	173, 483
TspRI	CASTG	2 cut(s)	30, 298
XceI	RCATGY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	342
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.