Rmu_sc0001844.1_g000005

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001844.1
OG0015813
Physical Location & Seq
Reverse (-)
38252 .. 40411
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
atgactgtgaggagtaatggaggactaaatcagatgcgaacaggcattgcagacatggtggctgtggcacgcattatgaatgcgaccttggtcattcctcaattggataaacgttcattctggcatgactcgagtacattttcagatatatttgatgaacttcacttcattgaaactctgcaagaagatgtcaagattgtcaaggagctcccacaggaattggcaaatgtgcctcgggcgaggaagcatttcacatcctgggctagcaccagttactatgaagacatgacacagctatggaaagaatatcaggtgattcatgttgcaaaatcagattctcgacttgcaaacaatgatcttcctcttgatatccagaggttgagatgccgtgccttgtatcatgcgctccgtttctctcccccaattgagagctttggaaaggttctgagcatgcatgacgctgacaccgcagaagctggtggagcggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

163

Amino Acids

18.52

Weight (kDa)

6.05

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 2 - 149 1.2e-48 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015813)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64600
fragaria_vesca FvH4_1g24200 FvH4_1g24200 FvH4_1g24200
rosa_chinensis RchiOBHm_Chr2g0120631 RchiOBHm_Chr2g0120641
rosa_laevigata RLG00000018563
rosa_multiflora Rmu_sc0001844.1_g000005
rosa_roxburghii Rroxscaffold_2G00123270
rosa_rugosa Rorug02G0230000
rosa_samantha Rh2AG286000 Rh2BG297800 Rh2CG275500 Rh2DG311500
rosa_wichuraiana Rw2G022970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 485
AciI CCGC 2 cut(s) 468, 485
AclI AACGTT 1 cut(s) 112
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 1 cut(s) 173
AjnI CCWGG 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 4 cut(s) 208, 295, 432, 476
AluI AGCT 4 cut(s) 208, 295, 432, 476
Alw21I GWGCWC 1 cut(s) 210
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 2 cut(s) 130, 234
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 406
AsuHPI GGTGA 1 cut(s) 325
AsuNHI GCTAGC 1 cut(s) 263
AvaI CYCGRG 2 cut(s) 130, 234
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 210
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 259
BfaI CTAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 259
BmeT110I CYCGRG 2 cut(s) 130, 234
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 24, 374
BmtI GCTAGC 1 cut(s) 267
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 87, 233, 258
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 3 cut(s) 87, 233, 258
BseGI GGATG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 130, 234
BsmI GAATGC 1 cut(s) 85
BsoBI CYCGRG 2 cut(s) 130, 234
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 2 cut(s) 468, 485
BspCNI CTCAG 1 cut(s) 438
BspOI GCTAGC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 87, 233, 258
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 70, 265, 452
BstDEI CTNAG 2 cut(s) 446, 489
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 467, 482
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 454
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 3 cut(s) 70, 265, 452
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 406
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 135
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 7 cut(s) 55, 125, 286, 320, 401, 451, 455
CviJI RGCY 7 cut(s) 62, 208, 263, 295, 432, 476, 488
CviKI_1 RGCY 7 cut(s) 62, 208, 263, 295, 432, 476, 488
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 2 cut(s) 446, 489
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 130, 234
EcoICRI GAGCTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 257
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 456
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 7 cut(s) 58, 128, 289, 323, 404, 454, 458
FatI CATG 7 cut(s) 54, 124, 285, 319, 400, 450, 454
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 264
GlaI GCGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 486
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 406
Hin1II CATG 7 cut(s) 58, 128, 289, 323, 404, 454, 458
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HinfI GANTC 3 cut(s) 128, 316, 335
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 33, 145, 334, 447
Hpy188III TCNNGA 4 cut(s) 193, 339, 365, 373
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 5 cut(s) 50, 181, 326, 347, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 482
HpyF3I CTNAG 2 cut(s) 446, 489
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 7 cut(s) 58, 128, 289, 323, 404, 454, 458
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 4 cut(s) 205, 213, 411, 482
LpnPI CCDG 9 cut(s) 27, 106, 200, 244, 271, 283, 296, 386, 462
LweI GCATC 2 cut(s) 24, 374
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 357
MbiI CCGCTC 1 cut(s) 485
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 197, 293, 350
MfeI CAATTG 2 cut(s) 101, 423
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 101, 218, 423
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 7 cut(s) 3, 14, 108, 234, 243, 369, 372
Mph1103I ATGCAT 1 cut(s) 456
MroXI GAANNNNTTC 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 259
MunI CAATTG 2 cut(s) 101, 423
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 467, 482
NdeII GATC 1 cut(s) 355
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 7 cut(s) 58, 128, 289, 323, 404, 454, 458
NsiI ATGCAT 1 cut(s) 456
NspI RCATGY 1 cut(s) 454
PaeI GCATGC 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 130
PctI GAATGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 316, 335
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 210
Psp1406I AACGTT 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspXI VCTCGAGB 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 1 cut(s) 210
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 89, 115, 210, 297, 315, 380, 434, 444, 478
SfaNI GCATC 2 cut(s) 24, 374
Sfr274I CTCGAG 1 cut(s) 130
SlaI CTCGAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 1 cut(s) 454
Sse9I AATT 3 cut(s) 101, 218, 423
SsiI CCGC 2 cut(s) 468, 485
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 131, 340
TasI AATT 3 cut(s) 101, 218, 423
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 2 cut(s) 316, 335
TspDTI ATGAA 6 cut(s) 92, 105, 157, 171, 294, 308
TspGWI ACGGA 1 cut(s) 398
XceI RCATGY 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.