Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001891.1

Orthogroup ID

OG0017816

Physical Location & Seq

Genomic Coordinates Reverse (-)

174244 .. 174934

Gene Structure 691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggcgagcaggtactgggtggtgtctctgcctgtccaaaactcggcgtcgtctttatggaactgcctccaggatcaaatctccaagcattccttcgacactcccctctacagattcaatattcccaatctccgcgtcggaaccctcgattctcttctctccctcagcaacgatctcttaaagtccaacaactttgtagagggtgtttctcataagatcaggcatcagatcgaggagctagagagagttttaggagtcgagagcagctctcttacagtggatggagttccagtggattcatacttcactaggttcgtctgggatgaatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000221 GO:0000325 GO:0000902 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0009507 GO:0009536 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0033176 GO:0033178 GO:0033180 GO:0034220 GO:0036442 GO:0040007 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071840 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

V-ATPase_C

Protein Analysis

110

Amino Acids

12.53

Weight (kDa)

5.19

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-ATPase_C	PF03223	5 - 109	4.4e-25	V-ATPase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017816)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048981
rosa_multiflora	Rmu_sc0000366.1_g000016 Rmu_sc0000493.1_g000050 Rmu_sc0001891.1_g000049
rosa_roxburghii	Rroxscaffold_1G00032640 Rroxscaffold_6G00389340 Rroxscaffold_6G00417960
rosa_samantha	Rh1AG159500 Rh1CG148700 Rh5BG332100 Rh5CG428800 Rh5DG343900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	238, 267
AluI	AGCT	2 cut(s)	238, 267
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	3 cut(s)	239, 309, 331
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	25
BplI	GAGNNNNNCTC	4 cut(s)	251, 283, 253, 285
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	20, 290
BseBI	CCWGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	286, 328
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	2 cut(s)	20, 290
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	73, 172, 216, 228
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	20, 290
BssMI	GATC	4 cut(s)	73, 172, 216, 228
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	286, 328
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	4 cut(s)	76, 175, 219, 231
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	73, 172, 216, 228
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	286, 328
BtsIMutI	CAGTG	2 cut(s)	282, 297
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	15
CseI	GACGC	2 cut(s)	36, 124
Csp6I	GTAC	1 cut(s)	13
CviJI	RGCY	2 cut(s)	238, 267
CviKI_1	RGCY	2 cut(s)	238, 267
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	4 cut(s)	75, 174, 218, 230
DpnII	GATC	4 cut(s)	73, 172, 216, 228
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	69
FaiI	YATR	3 cut(s)	58, 213, 301
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	265
FspBI	CTAG	3 cut(s)	239, 309, 331
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	53
HgaI	GACGC	2 cut(s)	36, 124
Hin1I	GRCGYC	1 cut(s)	47
HinfI	GANTC	5 cut(s)	114, 149, 255, 296, 326
Hpy188I	TCNGA	2 cut(s)	140, 228
Hpy188III	TCNNGA	1 cut(s)	259
Hpy99I	CGWCG	2 cut(s)	52, 140
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	73, 172, 216, 228
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	6 cut(s)	45, 56, 83, 205, 303, 304
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	3 cut(s)	239, 309, 331
MalI	GATC	4 cut(s)	75, 174, 218, 230
MboI	GATC	4 cut(s)	73, 172, 216, 228
MboII	GAAGA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	118, 210
MnlI	CCTC	6 cut(s)	77, 116, 155, 173, 193, 226
MseI	TTAA	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	135
NdeII	GATC	4 cut(s)	73, 172, 216, 228
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	114, 149, 296, 326
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	4 cut(s)	73, 172, 216, 228
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	4 cut(s)	14, 240, 269, 314
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	109
SsiI	CCGC	1 cut(s)	133
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	3 cut(s)	239, 309, 331
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	96, 147, 231, 258
TfiI	GAWTC	4 cut(s)	114, 149, 296, 326
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	282, 297
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	2 cut(s)	282, 297
XspI	CTAG	3 cut(s)	239, 309, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.