Rmu_sc0001911.1_g000049

26S proteasome non-ATPase regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001911.1
OG0009252
Physical Location & Seq
Reverse (-)
166288 .. 172334
6047 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1266 bp
atggccgctctgcaatacctagaatcttcgcgcaacgcgcacccggagctcgccgagtggtacaattcgctggcagatctgtaccagaagaagctatggcaccagctcactctcaagctcgagcagtttgttgctctcgccgtgtttcaggctggcgatgctctgatacagttatatcacaatttcatcacagacttcgagactaaaatcaaccttctgaagcttgcacactttgcagttattgtctctcgtcagtatccagagaaagaagctgctatcagttaccttgaaggggtgattgagaagcttcaggccactagagagcaacggatagaggagccaatcctttacatcaaaatgcaaatagcaatattcaaacttgagcaacaagaccagaaggagtgcaaaaagcttctagaagatggaaagagcacactggacagtatgactgacattgatccatctgtttatgccagttattattgggtttcatctcaatactataagttccgccaggaatttgctgagttctacaaaagcgctcttctttatctagcatacacatcagtggagtctctctcagattcatttaagctggatttggcatttgatttgtccctttctgcgctcctgggagataacatctacaactttggagagctacttgcccatcctattattaagagtcttctagggactaaggtagagtggctttactatattcttcaagcattcaactctggtgatttaggatgttatcaagagttatgccgtgtgcacaatgctgctctgagtgctcaaccggcattagttgagaacgagaagaagcttttggagaagattaacattttgtgcttgatggaaattatcttcagccggccatctgaagatcgaactatacctttgagtatcattgcagagcgtacaaaactttcgatcgaggatgtagagcatcttcttgtgaagagcctttctctgagcttgaacttgagcttgttatttacagccctagaatgtgtgttggagggaagaccacttcaacaggatgacttattagttagcgatgacaccactgtcagagctcagaaacatggatgcaatgctcacaatgctctagctagtttcaaaggtgatgatgatttcgagcagagtacatattactctacggacttcgacatgagtgatggttggaatgatgagatacatccacactcggagcagagttatgtctccgatgcgacgccatggttctggcagaggtattga

Protein Analysis

421

Amino Acids

48.44

Weight (kDa)

4.84

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSD13_N PF22037 21 - 242 6.8e-74 PSD13 N-terminal repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19006 AT4G19006 AT5G45620 AT5G45620
fragaria_vesca FvH4_5g23350 FvH4_5g23350 FvH4_5g23350
malus_domestica MD06G1024700.v1.1 MD16G1281300.v1.1
prunus_persica Prupe.5G025900_v2.0.a1
pyrus_communis pycom06g02000 pycom16g25120
rosa_chinensis RchiOBHm_Chr7g0212291
rosa_laevigata RLG00000002897
rosa_multiflora Rmu_sc0001911.1_g000049
rosa_roxburghii Rroxscaffold_3G00246920
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7AG266000 Rh7BG260100 Rh7CG282900 Rh7DG272900
rosa_wichuraiana Rw7G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1073
AccB1I GGYRCC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 2 cut(s) 31, 38
AciI CCGC 2 cut(s) 6, 511
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 2 cut(s) 3, 878
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 4 cut(s) 239, 293, 856, 906
AcyI GRCGYC 1 cut(s) 1241
AfaI GTAC 4 cut(s) 62, 83, 925, 1153
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 7 cut(s) 290, 376, 728, 736, 985, 1040, 1126
AjnI CCWGG 2 cut(s) 513, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AleI CACNNNNGTG 1 cut(s) 566
Alw21I GWGCWC 5 cut(s) 51, 434, 780, 799, 1084
Alw26I GTCTC 4 cut(s) 194, 250, 579, 1234
Alw44I GTGCAC 1 cut(s) 776
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 541
AoxI GGCC 3 cut(s) 3, 312, 878
ApaLI GTGCAC 1 cut(s) 776
ApeKI GCWGC 2 cut(s) 272, 785
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 4 cut(s) 33, 40, 542, 628
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 307, 755, 1142
AvaI CYCGRG 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 780
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 2 cut(s) 51, 1084
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BbsI GAAGAC 2 cut(s) 680, 1036
Bbv12I GWGCWC 5 cut(s) 51, 434, 780, 799, 1084
BbvI GCAGC 2 cut(s) 259, 772
BccI CCATC 6 cut(s) 416, 469, 678, 853, 889, 1178
BceAI ACGGC 2 cut(s) 125, 756
BciT130I CCWGG 2 cut(s) 515, 632
BciVI GTATCC 1 cut(s) 267
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 4 cut(s) 194, 250, 579, 1234
BfaI CTAG 8 cut(s) 20, 318, 416, 554, 692, 1010, 1115, 1119
BfoI RGCGCY 1 cut(s) 543
BfuI GTATCC 1 cut(s) 267
BglII AGATCT 1 cut(s) 76
BisI GCNGC 3 cut(s) 6, 273, 786
BlsI GCNGC 3 cut(s) 7, 274, 787
Bme1390I CCNGG 3 cut(s) 44, 515, 632
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 101, 339
BmrFI CCNGG 3 cut(s) 44, 515, 632
BmsI GCATC 4 cut(s) 148, 961, 1085, 1225
BpiI GAAGAC 2 cut(s) 680, 1036
BplI GAGNNNNNCTC 4 cut(s) 563, 595, 958, 990
BpuEI CTTGAG 3 cut(s) 98, 401, 1009
BpuMI CCSGG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 1241
BsaJI CCNNGG 2 cut(s) 631, 1244
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse118I RCCGGY 2 cut(s) 802, 876
Bse1I ACTGG 2 cut(s) 441, 474
Bse3DI GCAATG 2 cut(s) 912, 1105
BseBI CCWGG 2 cut(s) 515, 632
BseDI CCNNGG 2 cut(s) 631, 1244
BseGI GGATG 6 cut(s) 670, 758, 949, 1051, 1100, 1204
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 2 cut(s) 912, 1105
BseMII CTCAG 5 cut(s) 516, 594, 782, 968, 1097
BseNI ACTGG 2 cut(s) 441, 474
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 780
BseXI GCAGC 2 cut(s) 259, 772
Bsh1236I CGCG 2 cut(s) 31, 38
Bsh1285I CGRYCG 1 cut(s) 939
BshFI GGCC 3 cut(s) 5, 314, 880
BshNI GGYRCC 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 939
BsiHKAI GWGCWC 5 cut(s) 51, 434, 780, 799, 1084
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 3 cut(s) 44, 803, 877
BslFI GGGAC 2 cut(s) 601, 709
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 4 cut(s) 194, 250, 579, 1234
BsmFI GGGAC 2 cut(s) 601, 709
BsmI GAATGC 1 cut(s) 731
BsnI GGCC 3 cut(s) 5, 314, 880
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 5 cut(s) 51, 434, 780, 799, 1084
Bsp143I GATC 4 cut(s) 76, 457, 889, 936
Bsp19I CCATGG 1 cut(s) 1244
BspACI CCGC 2 cut(s) 6, 511
BspANI GGCC 3 cut(s) 5, 314, 880
BspCNI CTCAG 5 cut(s) 517, 593, 783, 969, 1096
BspFNI CGCG 2 cut(s) 31, 38
BspLI GGNNCC 2 cut(s) 101, 339
BspPI GGATC 1 cut(s) 452
BspQI GCTCTTC 2 cut(s) 549, 959
BspT107I GGYRCC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 912, 1105
BsrFI RCCGGY 2 cut(s) 802, 876
BsrI ACTGG 2 cut(s) 441, 474
BssAI RCCGGY 2 cut(s) 802, 876
BssECI CCNNGG 2 cut(s) 631, 1244
BssMI GATC 4 cut(s) 76, 457, 889, 936
BssNI GRCGYC 1 cut(s) 1241
BssT1I CCWWGG 1 cut(s) 1244
Bst2UI CCWGG 2 cut(s) 515, 632
Bst4CI ACNGT 3 cut(s) 171, 443, 1075
Bst6I CTCTTC 2 cut(s) 549, 959
BstACI GRCGYC 1 cut(s) 1241
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 5 cut(s) 51, 72, 154, 225, 878
BstDEI CTNAG 6 cut(s) 525, 580, 699, 791, 977, 1083
BstDSI CCRYGG 1 cut(s) 1244
BstF5I GGATG 6 cut(s) 670, 758, 949, 1051, 1100, 1204
BstFNI CGCG 2 cut(s) 31, 38
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 4 cut(s) 33, 40, 542, 628
BstKTI GATC 4 cut(s) 79, 460, 892, 939
BstMAI GTCTC 4 cut(s) 194, 250, 579, 1234
BstMBI GATC 4 cut(s) 76, 457, 889, 936
BstMCI CGRYCG 1 cut(s) 939
BstMWI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 794, 803, 1109
BstNI CCWGG 2 cut(s) 515, 632
BstSCI CCNGG 3 cut(s) 42, 513, 630
BstSLI GKGCMC 1 cut(s) 780
BstUI CGCG 2 cut(s) 31, 38
BstV1I GCAGC 2 cut(s) 259, 772
BstV2I GAAGAC 2 cut(s) 680, 1036
BstX2I RGATCY 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 1251
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 3 cut(s) 5, 314, 880
BtgI CCRYGG 1 cut(s) 1244
BtgZI GCGATG 2 cut(s) 171, 1077
BtsCI GGATG 6 cut(s) 670, 758, 949, 1051, 1100, 1204
BtsIMutI CAGTG 3 cut(s) 434, 573, 1071
Cac8I GCNNGC 5 cut(s) 51, 72, 154, 225, 878
CfoI GCGC 4 cut(s) 33, 40, 542, 628
Cfr10I RCCGGY 2 cut(s) 802, 876
CseI GACGC 1 cut(s) 1249
Csp6I GTAC 4 cut(s) 61, 82, 924, 1152
CviAII CATG 3 cut(s) 1091, 1177, 1245
CviQI GTAC 4 cut(s) 61, 82, 924, 1152
DdeI CTNAG 6 cut(s) 525, 580, 699, 791, 977, 1083
DpnI GATC 4 cut(s) 78, 459, 891, 938
DpnII GATC 4 cut(s) 76, 457, 889, 936
DrdI GACNNNNNNGTC 1 cut(s) 1073
DseDI GACNNNNNNGTC 1 cut(s) 1073
EaeI YGGCCR 2 cut(s) 3, 878
Eam1104I CTCTTC 2 cut(s) 549, 959
EarI CTCTTC 2 cut(s) 549, 959
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 49, 1082
Eco130I CCWWGG 1 cut(s) 1244
Eco24I GRGCYC 2 cut(s) 51, 1084
Eco47III AGCGCT 1 cut(s) 541
Eco53kI GAGCTC 2 cut(s) 49, 1082
Eco57I CTGAAG 4 cut(s) 239, 293, 856, 906
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 2 cut(s) 49, 1082
EcoRII CCWGG 2 cut(s) 513, 630
EcoT14I CCWWGG 1 cut(s) 1244
EcoT38I GRGCYC 2 cut(s) 51, 1084
ErhI CCWWGG 1 cut(s) 1244
FaeI CATG 3 cut(s) 1094, 1180, 1248
FaqI GGGAC 2 cut(s) 601, 709
FatI CATG 3 cut(s) 1090, 1176, 1244
Fnu4HI GCNGC 3 cut(s) 6, 273, 786
FokI GGATG 6 cut(s) 657, 765, 956, 1058, 1107, 1191
FriOI GRGCYC 2 cut(s) 51, 1084
Fsp4HI GCNGC 3 cut(s) 6, 273, 786
FspBI CTAG 8 cut(s) 20, 318, 416, 554, 692, 1010, 1115, 1119
GlaI GCGC 4 cut(s) 32, 39, 541, 627
GluI GCNGC 3 cut(s) 6, 273, 786
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 3 cut(s) 5, 314, 880
HapII CCGG 3 cut(s) 44, 803, 877
HgaI GACGC 1 cut(s) 1249
HhaI GCGC 4 cut(s) 33, 40, 542, 628
Hin1I GRCGYC 1 cut(s) 1241
Hin1II CATG 3 cut(s) 1094, 1180, 1248
Hin6I GCGC 4 cut(s) 31, 38, 540, 626
HinP1I GCGC 4 cut(s) 31, 38, 540, 626
HindIII AAGCTT 4 cut(s) 221, 305, 410, 827
HinfI GANTC 4 cut(s) 23, 572, 584, 685
HpaII CCGG 3 cut(s) 44, 803, 877
HphI GGTGA 3 cut(s) 307, 755, 1142
Hpy166II GTNNAC 1 cut(s) 778
Hpy188III TCNNGA 4 cut(s) 199, 260, 416, 761
Hpy8I GTNNAC 1 cut(s) 778
Hpy99I CGWCG 1 cut(s) 1243
HpyAV CCTTC 3 cut(s) 224, 284, 391
HpyCH4III ACNGT 3 cut(s) 171, 443, 1075
HpyCH4V TGCA 8 cut(s) 13, 227, 236, 361, 405, 778, 917, 1098
HpyF10VI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 794, 803, 1109
HpyF3I CTNAG 6 cut(s) 525, 580, 699, 791, 977, 1083
Hsp92I GRCGYC 1 cut(s) 1241
Hsp92II CATG 3 cut(s) 1094, 1180, 1248
HspAI GCGC 4 cut(s) 31, 38, 540, 626
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Kzo9I GATC 4 cut(s) 76, 457, 889, 936
LguI GCTCTTC 2 cut(s) 549, 959
LmnI GCTCC 4 cut(s) 46, 337, 633, 1216
Lsp1109I GCAGC 2 cut(s) 259, 772
LweI GCATC 4 cut(s) 148, 961, 1085, 1225
MaeI CTAG 8 cut(s) 20, 318, 416, 554, 692, 1010, 1115, 1119
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 78, 459, 891, 938
MbiI CCGCTC 1 cut(s) 8
MboI GATC 4 cut(s) 76, 457, 889, 936
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 5 cut(s) 51, 434, 780, 799, 1084
MluCI AATT 4 cut(s) 64, 181, 518, 864
MlyI GAGTC 2 cut(s) 581, 694
MmeI TCCRAC 2 cut(s) 1002, 1169
MnlI CCTC 4 cut(s) 328, 934, 1018, 1251
MroNI GCCGGC 1 cut(s) 876
MseI TTAA 3 cut(s) 591, 681, 843
MslI CAYNNNNRTG 2 cut(s) 356, 566
MspI CCGG 3 cut(s) 44, 803, 877
MspR9I CCNGG 3 cut(s) 44, 515, 632
Mva1269I GAATGC 1 cut(s) 731
MvaI CCWGG 2 cut(s) 515, 632
MvnI CGCG 2 cut(s) 31, 38
MwoI GCNNNNNNNGC 7 cut(s) 37, 46, 158, 233, 794, 803, 1109
NaeI GCCGGC 1 cut(s) 878
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 1244
NdeII GATC 4 cut(s) 76, 457, 889, 936
NgoMIV GCCGGC 1 cut(s) 876
NlaIII CATG 3 cut(s) 1094, 1180, 1248
NlaIV GGNNCC 2 cut(s) 101, 339
NmeAIII GCCGAG 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 119
PciSI GCTCTTC 2 cut(s) 549, 959
PctI GAATGC 1 cut(s) 731
PdiI GCCGGC 1 cut(s) 878
PfeI GAWTC 2 cut(s) 23, 584
PkrI GCNGC 3 cut(s) 7, 274, 787
Ple19I CGATCG 1 cut(s) 939
PleI GAGTC 2 cut(s) 580, 693
PpsI GAGTC 2 cut(s) 580, 693
Psp124BI GAGCTC 2 cut(s) 51, 1084
Psp6I CCWGG 2 cut(s) 513, 630
PspGI CCWGG 2 cut(s) 513, 630
PspN4I GGNNCC 2 cut(s) 101, 339
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 939
RsaI GTAC 4 cut(s) 62, 83, 925, 1153
RsaNI GTAC 4 cut(s) 61, 82, 924, 1152
RseI CAYNNNNRTG 2 cut(s) 356, 566
SacI GAGCTC 2 cut(s) 51, 1084
SapI GCTCTTC 2 cut(s) 549, 959
SaqAI TTAA 3 cut(s) 591, 681, 843
SatI GCNGC 3 cut(s) 6, 273, 786
Sau3AI GATC 4 cut(s) 76, 457, 889, 936
SchI GAGTC 2 cut(s) 581, 694
ScrFI CCNGG 3 cut(s) 44, 515, 632
SduI GDGCHC 5 cut(s) 51, 434, 780, 799, 1084
SfaNI GCATC 4 cut(s) 148, 961, 1085, 1225
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 356, 566
SmlI CTYRAG 4 cut(s) 113, 119, 380, 988
SmoI CTYRAG 4 cut(s) 113, 119, 380, 988
Sse9I AATT 4 cut(s) 64, 181, 518, 864
SsiI CCGC 2 cut(s) 6, 511
SspI AATATT 1 cut(s) 372
SspMI CTAG 8 cut(s) 20, 318, 416, 554, 692, 1010, 1115, 1119
SstI GAGCTC 2 cut(s) 51, 1084
StyD4I CCNGG 3 cut(s) 42, 513, 630
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 3 cut(s) 171, 443, 1075
TaqI TCGA 7 cut(s) 120, 198, 892, 935, 939, 1143, 1173
TasI AATT 4 cut(s) 64, 181, 518, 864
TatI WGTACW 1 cut(s) 1151
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 23, 584
Tru1I TTAA 3 cut(s) 591, 681, 843
Tru9I TTAA 3 cut(s) 591, 681, 843
TscAI CASTG 3 cut(s) 441, 573, 1078
TseI GCWGC 2 cut(s) 272, 785
TspDTI ATGAA 3 cut(s) 175, 480, 576
TspGWI ACGGA 2 cut(s) 343, 1181
TspRI CASTG 3 cut(s) 441, 573, 1078
VneI GTGCAC 1 cut(s) 776
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 415
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 8 cut(s) 20, 318, 416, 554, 692, 1010, 1115, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.