Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001970.1

Orthogroup ID

OG0018641

Physical Location & Seq

Genomic Coordinates Reverse (-)

66770 .. 67123

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001970.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgagaccagtgatcttttggtattttggactccctttattttgttacaccttggtggtcctgactcctgacaccatcactgctttttctctggaagatgataccctatggctaaggcacttgcttggcctcgtattccaggttacagcttctgtttatgtcttccttcaatcactcccgaataagctgcggctcccaacaaggcatctccttgttgctggaatcatcaagtctgcagagagaacacgtgctttgtatcttacaagcttggaaacttcaaggaatccatgcttaaaaagcctgatgctggacccaactatgggaatctcatggaagaatactcctcaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4220 DUF594

Protein Analysis

117

Amino Acids

13.37

Weight (kDa)

9.39

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018641)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216491
rosa_multiflora	Rmu_sc0001970.1_g000012 Rmu_sc0016089.1_g000004 Rmu_ssc0000454.1_g000024
rosa_roxburghii	Rroxscaffold_2G00098870
rosa_samantha	Rh2BG250800 Rh2DG623000 Rh3BG354600 Rh3CG351500 Rh7BG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AcvI	CACGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	307, 319, 320
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	170, 279
AjnI	CCWGG	1 cut(s)	138
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	4 cut(s)	149, 187, 267, 351
AluI	AGCT	4 cut(s)	149, 187, 267, 351
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	58, 310
AvaII	GGWCC	2 cut(s)	58, 310
BbrPI	CACGTG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	2 cut(s)	188, 191
BlsI	GCNGC	2 cut(s)	189, 192
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	58, 310
BmgT120I	GGNCC	2 cut(s)	58, 310
BmiI	GGNNCC	2 cut(s)	194, 312
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	214, 294
BpiI	GAAGAC	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 319, 320
Bse1I	ACTGG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	307, 319, 320
BseNI	ACTGG	1 cut(s)	8
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	174
BshFI	GGCC	1 cut(s)	129
BslI	CCNNNNNNNGG	3 cut(s)	307, 319, 320
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	194, 312
BspMAI	CTGCAG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	15, 78
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	58, 310
CviAII	CATG	2 cut(s)	288, 330
CviJI	RGCY	8 cut(s)	112, 129, 149, 187, 193, 267, 300, 351
CviKI_1	RGCY	8 cut(s)	112, 129, 149, 187, 193, 267, 300, 351
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	58, 310
Eco72I	CACGTG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	291, 333
FaiI	YATR	5 cut(s)	109, 159, 289, 320, 331
FatI	CATG	2 cut(s)	287, 329
Fnu4HI	GCNGC	2 cut(s)	188, 191
Fsp4HI	GCNGC	2 cut(s)	188, 191
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	2 cut(s)	188, 191
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	291, 333
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	5 cut(s)	30, 64, 222, 283, 324
Hpy188III	TCNNGA	4 cut(s)	61, 68, 92, 178
HpyAV	CCTTC	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	2 cut(s)	291, 333
Kzo9I	GATC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	9 cut(s)	21, 74, 77, 81, 125, 152, 204, 293, 314
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	2 cut(s)	214, 294
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	44, 142
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	3 cut(s)	107, 154, 346
MlyI	GAGTC	2 cut(s)	24, 58
MnlI	CCTC	2 cut(s)	140, 354
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	291, 333
NlaIV	GGNNCC	2 cut(s)	194, 312
OliI	CACNNNNGTG	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	222, 283, 324
PkrI	GCNGC	2 cut(s)	189, 192
PleI	GAGTC	2 cut(s)	24, 58
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	2 cut(s)	24, 58
Ppu21I	YACGTR	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	194, 312
PspPI	GGNCC	2 cut(s)	58, 310
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	188, 191
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	58, 310
SchI	GAGTC	2 cut(s)	24, 58
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	7 cut(s)	53, 144, 151, 189, 250, 269, 353
SfaNI	GCATC	2 cut(s)	214, 294
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	58, 310
SmiMI	CAYNNNNRTG	1 cut(s)	53
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	250
TauI	GCSGC	1 cut(s)	193
TfiI	GAWTC	3 cut(s)	222, 283, 324
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	15, 85
TseI	GCWGC	1 cut(s)	187
TspRI	CASTG	2 cut(s)	15, 85
VpaK11BI	GGWCC	2 cut(s)	58, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.