Rroxscaffold_2G00098870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
20302853 .. 20304035
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098870.1

Sequence Viewer

Length: 276 bp
ATGCTGCAAATCTTTCCGGCAAGTGTGGTGAAACTATGGAACGAATGTGACGTATGGAGTCACTATTGCTACATACTACCTAGTACCTACTCGATCAATGGAGGACACCGAGCTTTGGTTAAGGCACTTTCTAGGTTAGTAGTCCAGGAGTGGCTTTCTATATCTTCATATGGACAGCTAGGCACTTACCATCTACCGTTAGTGATACCGGTGTTTGTTGCTTTGGATTCTCAAGTGGAGAGAGTGTTAAGGGTAAAAAGGGAAAGTTATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.47

Weight (kDa)

8.66

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 115
AgeI ACCGGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 113, 178
AluI AGCT 2 cut(s) 113, 178
ApeKI GCWGC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 3 cut(s) 81, 132, 179
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 208
BseBI CCWGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 115
BshTI ACCGGT 1 cut(s) 208
BsiSI CCGG 2 cut(s) 17, 209
BslI CCNNNNNNNGG 1 cut(s) 115
Bsp143I GATC 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 198
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 208
Csp6I GTAC 1 cut(s) 84
CspAI ACCGGT 1 cut(s) 208
CviJI RGCY 3 cut(s) 113, 154, 178
CviKI_1 RGCY 3 cut(s) 113, 154, 178
CviQI GTAC 1 cut(s) 84
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 144
FaiI YATR 8 cut(s) 37, 55, 74, 161, 169, 171, 270, 272
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 3 cut(s) 81, 132, 179
GluI GCNGC 1 cut(s) 5
HapII CCGG 2 cut(s) 17, 209
HinfI GANTC 2 cut(s) 58, 227
HpaII CCGG 2 cut(s) 17, 209
HphI GGTGA 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 51
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 30, 131, 158, 222
MaeI CTAG 3 cut(s) 81, 132, 179
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 47, 59
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 1 cut(s) 95
MseI TTAA 2 cut(s) 120, 248
MspI CCGG 2 cut(s) 17, 209
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 47, 59
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 144
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 2 cut(s) 120, 248
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 146
SetI ASST 6 cut(s) 54, 82, 89, 115, 137, 180
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SspMI CTAG 3 cut(s) 81, 132, 179
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 92
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 120, 248
Tru9I TTAA 2 cut(s) 120, 248
TseFI GTSAC 2 cut(s) 47, 59
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 2 cut(s) 47, 59
TspDTI ATGAA 1 cut(s) 156
XspI CTAG 3 cut(s) 81, 132, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.