Rmu_sc0002087.1_g000001

arabinosyltransferase ARAD1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002087.1
Physical Location & Seq
Forward (+)
1 .. 2065
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002087.1_g000001.1.cds

Sequence Viewer

Length: 1166 bp
aagtgtacctctacgacctcccgacgcggttcacctacggcatcatcgagcagcactcgctcgcccgcggcggccaccccgacggcgacgtgtcgtcgctcaagtaccccggccaccagcacatgggggagtggtacctcttcaaggacctcctcaaccccgaatcggaccgggtcgggtcgccggtggctagggttttggatccggacgaggcggactttttctacgtgccgttcttctcctccttgagcttgatcgtcaacacgaaccggcaggcggccggatcggaggagaggccggcgtacagcgacgaggagaaccaggtggcgctggtggagtggctggaggcgcaggagtactggaagcggaacaatggacgcgaccatgtgatcatggcctctgatcccaatgctctgtacaaagtgcttgatagtgtgaaaaatgcagtcttgcttgtttgtgattttgggcggctcaaggcggaccaggggtcgctggtgaaggatgtcattgtgccctattctcaccggattaatacttataatggtgatatcagtgtcgaaaatcgcaacaccttgttgttcttcatgggcaatcgatttcgcaaggaggggggaaagatccgagatttgcttttccaattgcttgaaaatgaagaggatgtcatagtgaaacatggaacccaatccagggagagtcgacgggccgctacacatgggatgcatacgtctaagttctgtttgaatcctgctggtgatactccatcagcttgccggctttttgactctatagttagtttgtgtgtccctgtggtaatcagtgatagtattgagctgccatttgaagatgttatagactacaggaagatagccatatttgttgaatcgaatacagctttgaagccgggattcctggtctcaatgctaagagaaattaccagtgagagaatccttgaatatcagaaagagatgaatgaggtgaagcattattttcaatatggagtaccaaatggaactgtgaatgagatatggcgccatattgcacagaagcttccctttatcaagttgtcgatcaaccgtgacaaacgccttgtaaagagggatatgaatgtgccagactgctcttgtgtctgctcaaaccagactgggattataaccagcctatga

Protein Analysis

387

Amino Acids

44.07

Weight (kDa)

5.82

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011167)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 542, 1153
Acc65I GGTACC 1 cut(s) 134
AccB1I GGYRCC 2 cut(s) 134, 1031
AccB7I CCANNNNNTGG 1 cut(s) 123
AccI GTMKAC 1 cut(s) 699
AccII CGCG 3 cut(s) 27, 68, 380
AccIII TCCGGA 1 cut(s) 204
AclWI GGATC 5 cut(s) 196, 209, 291, 397, 615
AcoI YGGCCR 3 cut(s) 72, 111, 278
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 7 cut(s) 7, 106, 136, 304, 358, 418, 1004
AfiI CCNNNNNNNGG 6 cut(s) 123, 144, 165, 276, 689, 690
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 8 cut(s) 144, 649, 744, 844, 883, 900, 955, 994
AhdI GACNNNNNGTC 2 cut(s) 93, 489
AjiI CACGTC 1 cut(s) 90
AjnI CCWGG 4 cut(s) 320, 485, 688, 911
AluBI AGCT 5 cut(s) 251, 769, 834, 895, 1050
AluI AGCT 5 cut(s) 251, 769, 834, 895, 1050
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 5 cut(s) 196, 209, 291, 397, 615
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 6 cut(s) 72, 111, 278, 295, 395, 704
ApeKI GCWGC 2 cut(s) 51, 834
AseI ATTAAT 1 cut(s) 533
Asp718I GGTACC 1 cut(s) 134
AspLEI GCGC 3 cut(s) 330, 351, 1034
AspS9I GGNCC 4 cut(s) 147, 168, 483, 704
AsuC2I CCSGG 3 cut(s) 110, 172, 905
AsuHPI GGTGA 6 cut(s) 24, 510, 517, 559, 766, 990
AvaII GGWCC 3 cut(s) 147, 168, 483
BaeGI GKGCMC 1 cut(s) 518
BamHI GGATCC 1 cut(s) 201
BanI GGYRCC 2 cut(s) 134, 1031
BbvI GCAGC 2 cut(s) 63, 821
BccI CCATC 1 cut(s) 771
BceAI ACGGC 3 cut(s) 54, 99, 216
BciT130I CCWGG 4 cut(s) 322, 487, 690, 913
BclI TGATCA 1 cut(s) 389
BcnI CCSGG 3 cut(s) 110, 172, 905
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 788, 858
BfoI RGCGCY 2 cut(s) 331, 1035
BisI GCNGC 7 cut(s) 52, 69, 72, 278, 472, 707, 835
BlsI GCNGC 7 cut(s) 53, 70, 73, 279, 473, 708, 836
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 7 cut(s) 110, 172, 322, 487, 690, 905, 913
Bme18I GGWCC 3 cut(s) 147, 168, 483
BmeRI GACNNNNNGTC 2 cut(s) 93, 489
BmgBI CACGTC 1 cut(s) 90
BmgT120I GGNCC 4 cut(s) 147, 168, 483, 704
BmiI GGNNCC 4 cut(s) 136, 203, 681, 1033
BmrFI CCNGG 7 cut(s) 110, 172, 322, 487, 690, 905, 913
BmrI ACTGGG 1 cut(s) 1154
BmsI GCATC 2 cut(s) 50, 710
BmuI ACTGGG 1 cut(s) 1154
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpmI CTGGAG 1 cut(s) 364
BpuEI CTTGAG 3 cut(s) 85, 267, 460
BpuMI CCSGG 3 cut(s) 110, 172, 905
Bsa29I ATCGAT 1 cut(s) 597
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 921
BsaJI CCNNGG 4 cut(s) 66, 108, 486, 689
BsaWI WCCGGW 2 cut(s) 204, 527
Bsc4I CCNNNNNNNGG 6 cut(s) 123, 144, 165, 276, 689, 690
Bse118I RCCGGY 4 cut(s) 183, 269, 297, 773
Bse1I ACTGG 3 cut(s) 364, 938, 1149
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 4 cut(s) 322, 487, 690, 913
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 4 cut(s) 66, 108, 486, 689
BseGI GGATG 3 cut(s) 510, 666, 725
BseLI CCNNNNNNNGG 6 cut(s) 123, 144, 165, 276, 689, 690
BseNI ACTGG 3 cut(s) 364, 938, 1149
BseRI GAGGAG 4 cut(s) 142, 231, 304, 328
BseSI GKGCMC 1 cut(s) 518
BseX3I CGGCCG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 63, 821
Bsh1236I CGCG 3 cut(s) 27, 68, 380
Bsh1285I CGRYCG 1 cut(s) 281
BshFI GGCC 6 cut(s) 74, 113, 280, 297, 397, 706
BshNI GGYRCC 2 cut(s) 134, 1031
BshVI ATCGAT 1 cut(s) 597
BsiEI CGRYCG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 790
BslI CCNNNNNNNGG 6 cut(s) 123, 144, 165, 276, 689, 690
BsmAI GTCTC 1 cut(s) 921
BsmFI GGGAC 1 cut(s) 790
BsnI GGCC 6 cut(s) 74, 113, 280, 297, 397, 706
Bso31I GGTCTC 1 cut(s) 921
Bsp1286I GDGCHC 1 cut(s) 518
Bsp13I TCCGGA 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 416
Bsp143I GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
BspANI GGCC 6 cut(s) 74, 113, 280, 297, 397, 706
BspDI ATCGAT 1 cut(s) 597
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 3 cut(s) 27, 68, 380
BspLI GGNNCC 4 cut(s) 136, 203, 681, 1033
BspPI GGATC 5 cut(s) 196, 209, 291, 397, 615
BspT107I GGYRCC 2 cut(s) 134, 1031
BspTNI GGTCTC 1 cut(s) 921
BsrFI RCCGGY 4 cut(s) 183, 269, 297, 773
BsrGI TGTACA 1 cut(s) 416
BsrI ACTGG 3 cut(s) 364, 938, 1149
BssAI RCCGGY 4 cut(s) 183, 269, 297, 773
BssECI CCNNGG 4 cut(s) 66, 108, 486, 689
BssMI GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
BssNI GRCGYC 1 cut(s) 1032
Bst2UI CCWGG 4 cut(s) 322, 487, 690, 913
Bst4CI ACNGT 2 cut(s) 1017, 1078
Bst6I CTCTTC 2 cut(s) 145, 650
BstACI GRCGYC 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 228
BstC8I GCNNGC 6 cut(s) 62, 66, 275, 299, 771, 775
BstDEI CTNAG 2 cut(s) 731, 925
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 142
BstF5I GGATG 3 cut(s) 510, 666, 725
BstFNI CGCG 3 cut(s) 27, 68, 380
BstH2I RGCGCY 2 cut(s) 331, 1035
BstHHI GCGC 3 cut(s) 330, 351, 1034
BstKTI GATC 7 cut(s) 204, 257, 286, 392, 405, 623, 1073
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
BstMCI CGRYCG 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 57, 348
BstNI CCWGG 4 cut(s) 322, 487, 690, 913
BstSCI CCNGG 7 cut(s) 108, 170, 320, 485, 688, 903, 911
BstSFI CTRYAG 2 cut(s) 788, 858
BstSLI GKGCMC 1 cut(s) 518
BstUI CGCG 3 cut(s) 27, 68, 380
BstV1I GCAGC 2 cut(s) 63, 821
BstX2I RGATCY 2 cut(s) 201, 620
BstYI RGATCY 2 cut(s) 201, 620
BstZI CGGCCG 1 cut(s) 278
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 6 cut(s) 74, 113, 280, 297, 397, 706
BsuTUI ATCGAT 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 66
BtrI CACGTC 1 cut(s) 90
BtsCI GGATG 3 cut(s) 510, 666, 725
BtsIMutI CAGTG 3 cut(s) 561, 825, 945
Cac8I GCNNGC 6 cut(s) 62, 66, 275, 299, 771, 775
CfoI GCGC 3 cut(s) 330, 351, 1034
Cfr10I RCCGGY 4 cut(s) 183, 269, 297, 773
Cfr13I GGNCC 4 cut(s) 147, 168, 483, 704
Cfr42I CCGCGG 1 cut(s) 69
ClaI ATCGAT 1 cut(s) 597
CpoI CGGWCCG 1 cut(s) 168
CseI GACGC 2 cut(s) 33, 386
CsiI ACCWGGT 1 cut(s) 320
Csp6I GTAC 7 cut(s) 6, 105, 135, 303, 357, 417, 1003
CspI CGGWCCG 1 cut(s) 168
CviAII CATG 6 cut(s) 123, 385, 393, 588, 676, 715
CviQI GTAC 7 cut(s) 6, 105, 135, 303, 357, 417, 1003
DdeI CTNAG 2 cut(s) 731, 925
DinI GGCGCC 1 cut(s) 1033
DpnI GATC 7 cut(s) 203, 256, 285, 391, 404, 622, 1072
DpnII GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
DriI GACNNNNNGTC 2 cut(s) 93, 489
EaeI YGGCCR 3 cut(s) 72, 111, 278
EagI CGGCCG 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 145, 650
Eam1105I GACNNNNNGTC 2 cut(s) 93, 489
EarI CTCTTC 2 cut(s) 145, 650
EciI GGCGGA 2 cut(s) 229, 496
EclXI CGGCCG 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 921
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 3 cut(s) 147, 168, 483
Eco52I CGGCCG 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 147
EcoRII CCWGG 4 cut(s) 320, 485, 688, 911
EcoRV GATATC 1 cut(s) 552
EcoT22I ATGCAT 1 cut(s) 725
EgeI GGCGCC 1 cut(s) 1033
EheI GGCGCC 1 cut(s) 1033
FaeI CATG 6 cut(s) 126, 388, 396, 591, 679, 718
FalI AAGNNNNNCTT 2 cut(s) 1039, 1071
FaqI GGGAC 1 cut(s) 790
FatI CATG 6 cut(s) 122, 384, 392, 587, 675, 714
FauI CCCGC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 389
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 7 cut(s) 52, 69, 72, 278, 472, 707, 835
FokI GGATG 3 cut(s) 517, 673, 732
Fsp4HI GCNGC 7 cut(s) 52, 69, 72, 278, 472, 707, 835
FspBI CTAG 1 cut(s) 191
GlaI GCGC 3 cut(s) 329, 350, 1033
GluI GCNGC 7 cut(s) 52, 69, 72, 278, 472, 707, 835
GsuI CTGGAG 1 cut(s) 364
HaeII RGCGCY 2 cut(s) 331, 1035
HaeIII GGCC 6 cut(s) 74, 113, 280, 297, 397, 706
HgaI GACGC 2 cut(s) 33, 386
HhaI GCGC 3 cut(s) 330, 351, 1034
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 6 cut(s) 126, 388, 396, 591, 679, 718
Hin6I GCGC 3 cut(s) 328, 349, 1032
HinP1I GCGC 3 cut(s) 328, 349, 1032
HincII GTYRAC 2 cut(s) 261, 700
HindII GTYRAC 2 cut(s) 261, 700
HindIII AAGCTT 1 cut(s) 1048
HinfI GANTC 7 cut(s) 163, 696, 744, 784, 883, 908, 947
HphI GGTGA 6 cut(s) 24, 510, 517, 559, 766, 990
Hpy166II GTNNAC 4 cut(s) 6, 32, 261, 700
Hpy188I TCNGA 5 cut(s) 168, 288, 402, 625, 962
Hpy188III TCNNGA 2 cut(s) 21, 205
Hpy8I GTNNAC 4 cut(s) 6, 32, 261, 700
Hpy99I CGWCG 6 cut(s) 27, 85, 91, 99, 313, 704
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 2 cut(s) 1017, 1078
HpyCH4IV ACGT 3 cut(s) 89, 227, 727
HpyCH4V TGCA 3 cut(s) 445, 723, 1042
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 348
HpyF3I CTNAG 2 cut(s) 731, 925
HpySE526I ACGT 3 cut(s) 89, 227, 727
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 6 cut(s) 126, 388, 396, 591, 679, 718
HspAI GCGC 3 cut(s) 328, 349, 1032
KasI GGCGCC 1 cut(s) 1031
Kpn2I TCCGGA 1 cut(s) 204
KpnI GGTACC 1 cut(s) 138
KroI GCCGGC 2 cut(s) 297, 773
KroNI GCCGGC 2 cut(s) 299, 775
Ksp22I TGATCA 1 cut(s) 389
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
Lsp1109I GCAGC 2 cut(s) 63, 821
LweI GCATC 2 cut(s) 50, 710
MabI ACCWGGT 1 cut(s) 320
MaeI CTAG 1 cut(s) 191
MaeII ACGT 3 cut(s) 89, 227, 727
MaeIII GTNAC 1 cut(s) 1078
MalI GATC 7 cut(s) 203, 256, 285, 391, 404, 622, 1072
MboI GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
MboII GAAGA 6 cut(s) 132, 228, 576, 667, 856, 876
MfeI CAATTG 1 cut(s) 640
MflI RGATCY 2 cut(s) 201, 620
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 2 cut(s) 640, 932
Mly113I GGCGCC 1 cut(s) 1032
MlyI GAGTC 2 cut(s) 705, 778
Mph1103I ATGCAT 1 cut(s) 725
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 2 cut(s) 297, 773
MseI TTAA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 7 cut(s) 110, 172, 322, 487, 690, 905, 913
MunI CAATTG 1 cut(s) 640
MvaI CCWGG 4 cut(s) 322, 487, 690, 913
MvnI CGCG 3 cut(s) 27, 68, 380
MwoI GCNNNNNNNGC 2 cut(s) 57, 348
NaeI GCCGGC 2 cut(s) 299, 775
NarI GGCGCC 1 cut(s) 1032
NciI CCSGG 3 cut(s) 110, 172, 905
NdeII GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
NgoMIV GCCGGC 2 cut(s) 297, 773
NlaIII CATG 6 cut(s) 126, 388, 396, 591, 679, 718
NlaIV GGNNCC 4 cut(s) 136, 203, 681, 1033
NmuCI GTSAC 1 cut(s) 1078
NsiI ATGCAT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdiI GCCGGC 2 cut(s) 299, 775
PfeI GAWTC 5 cut(s) 163, 744, 883, 908, 947
PflFI GACNNNGTC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 123
PkrI GCNGC 7 cut(s) 53, 70, 73, 279, 473, 708, 836
PleI GAGTC 2 cut(s) 704, 778
PluTI GGCGCC 1 cut(s) 1035
PpsI GAGTC 2 cut(s) 704, 778
Ppu21I YACGTR 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 533
PsiI TTATAA 2 cut(s) 542, 1153
Psp5II RGGWCCY 1 cut(s) 147
Psp6I CCWGG 4 cut(s) 320, 485, 688, 911
PspGI CCWGG 4 cut(s) 320, 485, 688, 911
PspN4I GGNNCC 4 cut(s) 136, 203, 681, 1033
PspPI GGNCC 4 cut(s) 147, 168, 483, 704
PspPPI RGGWCCY 1 cut(s) 147
PsuI RGATCY 2 cut(s) 201, 620
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 7 cut(s) 7, 106, 136, 304, 358, 418, 1004
RsaNI GTAC 7 cut(s) 6, 105, 135, 303, 357, 417, 1003
Rsr2I CGGWCCG 1 cut(s) 168
RsrII CGGWCCG 1 cut(s) 168
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 698
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 7 cut(s) 52, 69, 72, 278, 472, 707, 835
Sau3AI GATC 7 cut(s) 201, 254, 283, 389, 402, 620, 1070
Sau96I GGNCC 4 cut(s) 147, 168, 483, 704
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 705, 778
ScrFI CCNGG 7 cut(s) 110, 172, 322, 487, 690, 905, 913
SduI GDGCHC 1 cut(s) 518
SexAI ACCWGGT 1 cut(s) 320
SfaNI GCATC 2 cut(s) 50, 710
SfcI CTRYAG 2 cut(s) 788, 858
SfoI GGCGCC 1 cut(s) 1033
Sfr303I CCGCGG 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 3 cut(s) 147, 168, 483
SmlI CTYRAG 3 cut(s) 100, 246, 475
SmoI CTYRAG 3 cut(s) 100, 246, 475
Sse9I AATT 2 cut(s) 640, 932
SspDI GGCGCC 1 cut(s) 1031
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 7 cut(s) 108, 170, 320, 485, 688, 903, 911
TaaI ACNGT 2 cut(s) 1017, 1078
TaiI ACGT 3 cut(s) 92, 230, 730
TaqI TCGA 6 cut(s) 47, 560, 597, 699, 886, 1069
TasI AATT 2 cut(s) 640, 932
TatI WGTACW 2 cut(s) 356, 416
TauI GCSGC 5 cut(s) 71, 74, 280, 474, 709
TfiI GAWTC 5 cut(s) 163, 744, 883, 908, 947
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 3 cut(s) 561, 825, 945
TseFI GTSAC 1 cut(s) 1078
TseI GCWGC 2 cut(s) 51, 834
Tsp45I GTSAC 1 cut(s) 1078
TspDTI ATGAA 4 cut(s) 576, 668, 985, 1120
TspRI CASTG 3 cut(s) 561, 825, 945
Tth111I GACNNNGTC 1 cut(s) 172
Van91I CCANNNNNTGG 1 cut(s) 123
VpaK11BI GGWCC 3 cut(s) 147, 168, 483
VspI ATTAAT 1 cut(s) 533
XagI CCTNNNNNAGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 1 cut(s) 191
ZrmI AGTACT 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.