Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

5126157 .. 5128941

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATAGGCAGGAAAATCCCAGGCGCCGGAGACAGCAAATCTGCTAAGGCTGAGGAGAGCGAGAGCGAGGAGATCGAGGATATTTTAGAAGGACTCAAAATATGGGCATCGAGCACGAGGAGTGCAAAGAGAGCAAGGAGAGCAAAAAGAGCAAGGAGAGCACGACGCGGCCGGAGATATGGTAGCAAGGTCAAGGTCTGGAAAGTAAACGCACCTGCTATAATTCTACCCGTGGCAATAAAACCAGAGACCGTCACTATTCCTGGCAAAAATGGTGCTGATCCTGTTAAAATCTCCTTTTTCGATTGTTCAGTCCCATATAAGCCAAAGATCCGCAGAGAGAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

116

Amino Acids

12.9

Weight (kDa)

10.56

Isoelectric Point (pI)

65.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	168, 334
AclWI	GGATC	2 cut(s)	275, 325
AcoI	YGGCCR	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	19, 262
Alw21I	GWGCWC	2 cut(s)	116, 163
Alw26I	GTCTC	2 cut(s)	24, 242
AlwI	GGATC	2 cut(s)	275, 325
AoxI	GGCC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	116, 163
BbvCI	CCTCAGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	21, 264
BcoDI	GTCTC	2 cut(s)	24, 242
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	21, 264
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	21, 264
BmsI	GCATC	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	45, 51
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	19, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	21, 264
BseDI	CCNNGG	2 cut(s)	19, 231
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	3 cut(s)	68, 83, 133
BseX3I	CGGCCG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	116, 163
BsiSI	CCGG	2 cut(s)	27, 172
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	24, 242
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	116, 163
Bsp143I	GATC	3 cut(s)	72, 280, 330
BspACI	CCGC	2 cut(s)	168, 334
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	275, 325
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	242
BssECI	CCNNGG	2 cut(s)	19, 231
BssMI	GATC	3 cut(s)	72, 280, 330
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	21, 264
Bst4CI	ACNGT	1 cut(s)	253
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	45, 51
BstDSI	CCRYGG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	75, 283, 333
BstMAI	GTCTC	2 cut(s)	24, 242
BstMBI	GATC	3 cut(s)	72, 280, 330
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 149, 158
BstNI	CCWGG	2 cut(s)	21, 264
BstSCI	CCNGG	2 cut(s)	19, 262
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BstZI	CGGCCG	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	1 cut(s)	174
CviJI	RGCY	3 cut(s)	50, 171, 325
CviKI_1	RGCY	3 cut(s)	50, 171, 325
DdeI	CTNAG	2 cut(s)	45, 51
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	3 cut(s)	74, 282, 332
DpnII	GATC	3 cut(s)	72, 280, 330
EaeI	YGGCCR	1 cut(s)	169
EagI	CGGCCG	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	242
Eco52I	CGGCCG	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	19, 262
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
FaiI	YATR	6 cut(s)	103, 180, 221, 319, 321, 349
FaqI	GGGAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	27, 172
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	93, 343
HpaII	CCGG	2 cut(s)	27, 172
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 149, 158
HpyF3I	CTNAG	2 cut(s)	45, 51
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	72, 280, 330
LweI	GCATC	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	74, 282, 332
MboI	GATC	3 cut(s)	72, 280, 330
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	116, 163
MluCI	AATT	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	46, 61, 70, 111
MseI	TTAA	1 cut(s)	288
MspI	CCGG	2 cut(s)	27, 172
MspR9I	CCNGG	2 cut(s)	21, 264
MvaI	CCWGG	2 cut(s)	21, 264
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 149, 158
NarI	GGCGCC	1 cut(s)	24
NdeII	GATC	3 cut(s)	72, 280, 330
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	87
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	19, 262
PspGI	CCWGG	2 cut(s)	19, 262
PspN4I	GGNNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	3 cut(s)	72, 280, 330
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	2 cut(s)	21, 264
SduI	GDGCHC	2 cut(s)	116, 163
SetI	ASST	3 cut(s)	192, 198, 217
SfaNI	GCATC	1 cut(s)	116
SfoI	GGCGCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	2 cut(s)	168, 334
SspDI	GGCGCC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	19, 262
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	75, 110, 303
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.