Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

58304276 .. 58310053

Gene Structure 5778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGCTGCCGTGGAAGAAACAAAATCAGAGAAAGAGACTGAAGTGATTGCGCCTGAAGCCGAAGAAGAAGAAGTAGTAGTAGTAGTAGATGAGGATGAGGATGAGGATGAGGAAGAGGACTGGTCATCGGACTCGGACATCGGAGATGCATTGGACTATTTGGATTCCAAGGACGACGACGCAGTTGAAGGCGCCTTCACTATCAATTCGCGGCGCCCAAATGCCCATGGAGGGCCTTCACTCTCGCCCCTAACTCCTCTACTCTTCAGCCTCTCTCTAATCGCAACCAGAGGGGAAAGTGTTCGGGACATGGCCACTGGAAGAACAAAGACTACTGAGAAGGCGGATCGTGCCACTGTTGAGCAGGCTATTGATCCTAGAACTCGGATGGTGTTATTCAAAATGCTGAATCGCGGAGTGTTTAAGGATATCAATGGCTGCATTTCTACTGGGAAAGAAGCAAATGTTTATCATGCAACAAAAGCTGATGGCGGGGAACTGGCAATCAAAGTCTTCAAAACCTCTATTCTTGTTTTTAATAAGTTTGATGGAGAATTTGACCAAGCAACCATAGAGTATAGTACAGGGAAGATAAGATTTTACAGTTTTGAGATTCAGGATAGGGATAGATATGTTCAAGGGGACTACAGGTTCAGACATGGATACTGCAAGCACAATCCTAGGAAAATGGTGAAGACATGGGCCGAGAGAAAAAAGGAATTTGATCAGGCTGAAGGAATTAGGTGCCCAGAAGTAGGTCCTCTAAGACTTCATGTTCTGGTGATGGAATTCATAGGTAAGGATGGTTGGGCAGCGCCACGCCTAAAGGATGCTGCATTATCACTTGACAAGCTACGAGAAGGTTATATGGAGATGGTTATTGCCATGCGAACATTATATCAGAAGTGCAAACTGGTGCATGGAGATCTCAGTGAATACAACATACTTTATTTTGAGGGCCACTTGTATATCATCGATGTTTCTCAATCAGTTGATCTCGACCACCCTCATGCCCTTGATTTCCTACGTGAAGATTGTGTCCATGTATCCGATTTCTTTAAGAAACATGGTGTAGCTGTCATGACAATTCGAGAGCTCTTTGACTTTATAGTGGATCCATGTATTGCTGATGATGATATAGACAGTTATCTGGAGAAGGTGCAACAAAAAATCATGGCAAGAGGAGATATGACAGCAGAGGAGGAAATTGCAGATGCTGTATTTGTGCAGTCATACATTCCAAAGACGCTAGATAACGTGAAGAATGCTGAGGCGGACGTAATACGATTAACCAGTGGTGAGGACACTGGAGACATGTACTATAAAACTATTACAGGATTAAAGGAGGCTCTTCCAAAAGGCCAACCAGCTCCACCTGAGAAAGATCAGGAACATGATGGTAATGCCCCAGAAGAGTCCTTGGTCGATCCGGTTGGTGGTCCTGAAGCTCATGAGACCGAGTCTGACTCTGGTACAGATGAAGAAAGCTCAAGTGACTCAGAAGGGAATTCCCCATCAAAATCAAAGGCACAGGATCCTCTTGATAAGAAAGCTGCTAGAAAAGAGAACAAGAAGAAAGTGAAAGAAGAGAAGAGGGAAGCTCGGAAAACTAAAAACCAGCAGCAGCATCTGAAGAAGAAGAAGAAGAAGCAGAGCAGAAGGTCTCCGACACCGACAACAGCGAGCAATCGCAAGAATGGGAGACCATGGCTCGAGCTTGGCTCTCGTCTTTCCCCCGAGGCCAAAGCTGTGTCCATGGACGAGGTCGAGGCCTGGATCGACTCCAACTTCGATTTCATACCTGAAGGCATCAAATCCATGCCTCGCCTTGACGTCTGTCACCGCCTCATCGCTATCCAGAACTGCATGAGGTCCGCCAATCAGGAGAAAGAAGAAGATCAAGGTGATATTCCACATGCTCGATTTCAACGCACTGATCAGTGGAGACCGGTTTATATTTGGTTAGAATCTTTGAATAGAGACGACGTTGTGAAATCCAGAGATATAAGCACTAATTTAATCAATGTACCTCAAGATAGTGATCTATTTATGATGAAACGAAAGGAAGCACTTGAGAAATTTCAGATCTTAGTGGAGCTTGAGAAGCTGCTTGCCCCTACGTTCTTAAAGCGTGGAGATGGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

716

Amino Acids

81.23

Weight (kDa)

5.11

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	204 - 365	8.6e-53	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1836
AccB1I	GGYRCC	3 cut(s)	191, 213, 744
AccII	CGCG	2 cut(s)	211, 414
AciI	CCGC	7 cut(s)	211, 344, 414, 492, 1274, 1843, 1875
AclWI	GGATC	8 cut(s)	354, 368, 1109, 1122, 1421, 1529, 1542, 1784
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	5 cut(s)	554, 719, 788, 1507, 2078
AcuI	CTGAAG	7 cut(s)	60, 75, 250, 753, 1464, 1652, 1824
AcyI	GRCGYC	3 cut(s)	192, 214, 1833
AfaI	GTAC	4 cut(s)	583, 1319, 1474, 2028
AfiI	CCNNNNNNNGG	3 cut(s)	231, 755, 1436
AflIII	ACRYGT	1 cut(s)	1314
AgeI	ACCGGT	1 cut(s)	1948
AgsI	TTSAA	6 cut(s)	188, 400, 517, 638, 1928, 1975
AjnI	CCWGG	1 cut(s)	1772
AjuI	GAANNNNNNNTTGG	2 cut(s)	1778, 1810
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
Alw21I	GWGCWC	1 cut(s)	1098
Alw26I	GTCTC	7 cut(s)	29, 1305, 1448, 1668, 1696, 1939, 1974
AlwI	GGATC	8 cut(s)	354, 368, 1109, 1122, 1421, 1529, 1542, 1784
AlwNI	CAGNNNCTG	2 cut(s)	1217, 1630
Ama87I	CYCGRG	2 cut(s)	1712, 1736
AoxI	GGCC	7 cut(s)	233, 312, 702, 958, 1360, 1740, 1770
ApeKI	GCWGC	8 cut(s)	5, 438, 812, 833, 1553, 1621, 1624, 2107
ApoI	RAATTY	5 cut(s)	554, 719, 788, 1507, 2078
ArsI	GACNNNNNNTTYG	2 cut(s)	1772, 1804
AsiGI	ACCGGT	1 cut(s)	1948
Asp700I	GAANNNNTTC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	680
AspLEI	GCGC	4 cut(s)	52, 194, 216, 817
AspS9I	GGNCC	6 cut(s)	233, 702, 758, 958, 1439, 1872
AsuHPI	GGTGA	5 cut(s)	703, 793, 1310, 1832, 1916
AvaI	CYCGRG	2 cut(s)	1712, 1736
AvaII	GGWCC	3 cut(s)	758, 1439, 1872
AvrII	CCTAGG	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	314
BamHI	GGATCC	2 cut(s)	1114, 1534
BanI	GGYRCC	3 cut(s)	191, 213, 744
BanII	GRGCYC	1 cut(s)	1098
BbsI	GAAGAC	2 cut(s)	505, 701
Bbv12I	GWGCWC	1 cut(s)	1098
BbvCI	CCTCAGC	1 cut(s)	1269
BbvI	GCAGC	7 cut(s)	425, 820, 824, 1540, 1633, 1636, 2094
BccI	CCATC	9 cut(s)	382, 482, 542, 778, 797, 868, 1391, 1522, 2132
BciT130I	CCWGG	1 cut(s)	1774
BciVI	GTATCC	2 cut(s)	656, 1057
BclI	TGATCA	2 cut(s)	724, 1936
BcoDI	GTCTC	7 cut(s)	29, 1305, 1448, 1668, 1696, 1939, 1974
BfaI	CTAG	4 cut(s)	378, 681, 1250, 1557
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	3 cut(s)	195, 217, 818
BfuI	GTATCC	2 cut(s)	656, 1057
BglII	AGATCT	2 cut(s)	925, 2085
BisI	GCNGC	9 cut(s)	6, 212, 439, 813, 834, 1554, 1622, 1625, 2108
BlnI	CCTAGG	1 cut(s)	680
BlsI	GCNGC	9 cut(s)	7, 213, 440, 814, 835, 1555, 1623, 1626, 2109
Bme1390I	CCNGG	1 cut(s)	1774
Bme18I	GGWCC	3 cut(s)	758, 1439, 1872
BmeT110I	CYCGRG	2 cut(s)	1712, 1736
BmgT120I	GGNCC	6 cut(s)	233, 702, 758, 958, 1439, 1872
BmiI	GGNNCC	5 cut(s)	193, 215, 746, 1116, 1536
BmrFI	CCNGG	1 cut(s)	1774
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	5 cut(s)	136, 820, 1204, 1636, 1818
BmuI	ACTGGG	1 cut(s)	459
BoxI	GACNNNNGTC	1 cut(s)	1836
BpiI	GAAGAC	2 cut(s)	505, 701
BplI	GAGNNNNNCTC	6 cut(s)	1451, 1483, 1585, 1617, 1706, 1738
BpmI	CTGGAG	2 cut(s)	1172, 1329
Bpu10I	CCTNAGC	1 cut(s)	1269
BpuEI	CTTGAG	4 cut(s)	1474, 2016, 2093, 2120
Bsa29I	ATCGAT	1 cut(s)	975
BsaAI	YACGTR	1 cut(s)	1028
BsaBI	GATNNNNATC	1 cut(s)	2040
BsaHI	GRCGYC	3 cut(s)	192, 214, 1833
BsaI	GGTCTC	4 cut(s)	1448, 1668, 1696, 1939
BsaJI	CCNNGG	8 cut(s)	9, 168, 226, 680, 1419, 1706, 1737, 1755
BsaWI	WCCGGW	2 cut(s)	1429, 1948
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 755, 1436
Bse118I	RCCGGY	1 cut(s)	1948
Bse1I	ACTGG	7 cut(s)	125, 322, 454, 504, 918, 1293, 1312
Bse8I	GATNNNNATC	1 cut(s)	2040
BseBI	CCWGG	1 cut(s)	1774
BseCI	ATCGAT	1 cut(s)	975
BseDI	CCNNGG	8 cut(s)	9, 168, 226, 680, 1419, 1706, 1737, 1755
BseGI	GGATG	6 cut(s)	100, 106, 112, 393, 808, 835
BseJI	GATNNNNATC	1 cut(s)	2040
BseLI	CCNNNNNNNGG	3 cut(s)	231, 755, 1436
BseMII	CTCAG	5 cut(s)	327, 943, 1260, 1368, 1512
BseNI	ACTGG	7 cut(s)	125, 322, 454, 504, 918, 1293, 1312
BseRI	GAGGAG	3 cut(s)	246, 1197, 1214
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	7 cut(s)	425, 820, 824, 1540, 1633, 1636, 2094
BsgI	GTGCAG	1 cut(s)	1247
Bsh1236I	CGCG	2 cut(s)	211, 414
BshFI	GGCC	7 cut(s)	235, 314, 704, 960, 1362, 1742, 1772
BshNI	GGYRCC	3 cut(s)	191, 213, 744
BshTI	ACCGGT	1 cut(s)	1948
BshVI	ATCGAT	1 cut(s)	975
BsiHKAI	GWGCWC	1 cut(s)	1098
BsiHKCI	CYCGRG	2 cut(s)	1712, 1736
BsiSI	CCGG	2 cut(s)	1430, 1949
BslFI	GGGAC	2 cut(s)	320, 656
BslI	CCNNNNNNNGG	3 cut(s)	231, 755, 1436
BsmAI	GTCTC	7 cut(s)	29, 1305, 1448, 1668, 1696, 1939, 1974
BsmBI	CGTCTC	1 cut(s)	1974
BsmFI	GGGAC	2 cut(s)	320, 656
BsmI	GAATGC	1 cut(s)	1270
BsnI	GGCC	7 cut(s)	235, 314, 704, 960, 1362, 1742, 1772
Bso31I	GGTCTC	4 cut(s)	1448, 1668, 1696, 1939
BsoBI	CYCGRG	2 cut(s)	1712, 1736
Bsp1286I	GDGCHC	2 cut(s)	749, 1098
Bsp19I	CCATGG	3 cut(s)	226, 1706, 1755
BspACI	CCGC	7 cut(s)	211, 344, 414, 492, 1274, 1843, 1875
BspANI	GGCC	7 cut(s)	235, 314, 704, 960, 1362, 1742, 1772
BspCNI	CTCAG	5 cut(s)	328, 942, 1261, 1369, 1511
BspDI	ATCGAT	1 cut(s)	975
BspFNI	CGCG	2 cut(s)	211, 414
BspHI	TCATGA	2 cut(s)	1080, 1450
BspLI	GGNNCC	5 cut(s)	193, 215, 746, 1116, 1536
BspPI	GGATC	8 cut(s)	354, 368, 1109, 1122, 1421, 1529, 1542, 1784
BspQI	GCTCTTC	1 cut(s)	1356
BspT107I	GGYRCC	3 cut(s)	191, 213, 744
BspTNI	GGTCTC	4 cut(s)	1448, 1668, 1696, 1939
BsrFI	RCCGGY	1 cut(s)	1948
BsrI	ACTGG	7 cut(s)	125, 322, 454, 504, 918, 1293, 1312
BssAI	RCCGGY	1 cut(s)	1948
BssECI	CCNNGG	8 cut(s)	9, 168, 226, 680, 1419, 1706, 1737, 1755
BssNI	GRCGYC	3 cut(s)	192, 214, 1833
BssT1I	CCWWGG	6 cut(s)	168, 226, 680, 1419, 1706, 1755
Bst2UI	CCWGG	1 cut(s)	1774
Bst4CI	ACNGT	3 cut(s)	358, 605, 1145
Bst6I	CTCTTC	6 cut(s)	108, 269, 1356, 1407, 1581, 1586
BstACI	GRCGYC	3 cut(s)	192, 214, 1833
BstBAI	YACGTR	1 cut(s)	1028
BstC8I	GCNNGC	4 cut(s)	366, 671, 1684, 2112
BstDEI	CTNAG	7 cut(s)	336, 764, 929, 1269, 1377, 1498, 2089
BstDSI	CCRYGG	4 cut(s)	9, 226, 1706, 1755
BstF5I	GGATG	6 cut(s)	100, 106, 112, 393, 808, 835
BstFNI	CGCG	2 cut(s)	211, 414
BstH2I	RGCGCY	3 cut(s)	195, 217, 818
BstHHI	GCGC	4 cut(s)	52, 194, 216, 817
BstMAI	GTCTC	7 cut(s)	29, 1305, 1448, 1668, 1696, 1939, 1974
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 350, 482, 2104
BstNI	CCWGG	1 cut(s)	1774
BstNSI	RCATGY	2 cut(s)	1318, 1919
BstPAI	GACNNNNGTC	1 cut(s)	1836
BstSCI	CCNGG	1 cut(s)	1772
BstSFI	CTRYAG	1 cut(s)	646
BstSLI	GKGCMC	1 cut(s)	749
BstUI	CGCG	2 cut(s)	211, 414
BstV1I	GCAGC	7 cut(s)	425, 820, 824, 1540, 1633, 1636, 2094
BstV2I	GAAGAC	2 cut(s)	505, 701
BstX2I	RGATCY	4 cut(s)	925, 1114, 1534, 2085
BstYI	RGATCY	4 cut(s)	925, 1114, 1534, 2085
Bsu15I	ATCGAT	1 cut(s)	975
BsuI	GTATCC	2 cut(s)	656, 1057
BsuRI	GGCC	7 cut(s)	235, 314, 704, 960, 1362, 1742, 1772
BsuTUI	ATCGAT	1 cut(s)	975
BtgI	CCRYGG	4 cut(s)	9, 226, 1706, 1755
BtgZI	GCGATG	1 cut(s)	1834
BtsCI	GGATG	6 cut(s)	100, 106, 112, 393, 808, 835
BtsIMutI	CAGTG	7 cut(s)	315, 354, 937, 1300, 1305, 1932, 1946
Cac8I	GCNNGC	4 cut(s)	366, 671, 1684, 2112
CaiI	CAGNNNCTG	2 cut(s)	1217, 1630
CciI	TCATGA	2 cut(s)	1080, 1450
CfoI	GCGC	4 cut(s)	52, 194, 216, 817
Cfr10I	RCCGGY	1 cut(s)	1948
Cfr13I	GGNCC	6 cut(s)	233, 702, 758, 958, 1439, 1872
ClaI	ATCGAT	1 cut(s)	975
CseI	GACGC	2 cut(s)	188, 1255
Csp6I	GTAC	4 cut(s)	582, 1318, 1473, 2027
CspAI	ACCGGT	1 cut(s)	1948
CviQI	GTAC	4 cut(s)	582, 1318, 1473, 2027
DdeI	CTNAG	7 cut(s)	336, 764, 929, 1269, 1377, 1498, 2089
DinI	GGCGCC	2 cut(s)	193, 215
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	6 cut(s)	108, 269, 1356, 1407, 1581, 1586
EarI	CTCTTC	6 cut(s)	108, 269, 1356, 1407, 1581, 1586
EciI	GGCGGA	3 cut(s)	359, 1289, 1864
Ecl136II	GAGCTC	1 cut(s)	1096
Eco130I	CCWWGG	6 cut(s)	168, 226, 680, 1419, 1706, 1755
Eco147I	AGGCCT	1 cut(s)	1772
Eco24I	GRGCYC	1 cut(s)	1098
Eco31I	GGTCTC	4 cut(s)	1448, 1668, 1696, 1939
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	3 cut(s)	758, 1439, 1872
Eco53kI	GAGCTC	1 cut(s)	1096
Eco57I	CTGAAG	7 cut(s)	60, 75, 250, 753, 1464, 1652, 1824
Eco88I	CYCGRG	2 cut(s)	1712, 1736
EcoICRI	GAGCTC	1 cut(s)	1096
EcoO109I	RGGNCCY	2 cut(s)	233, 758
EcoRI	GAATTC	2 cut(s)	788, 1507
EcoRII	CCWGG	1 cut(s)	1772
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	6 cut(s)	168, 226, 680, 1419, 1706, 1755
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	1098
EgeI	GGCGCC	2 cut(s)	193, 215
EheI	GGCGCC	2 cut(s)	193, 215
ErhI	CCWWGG	6 cut(s)	168, 226, 680, 1419, 1706, 1755
Esp3I	CGTCTC	1 cut(s)	1974
FaqI	GGGAC	2 cut(s)	320, 656
FauI	CCCGC	1 cut(s)	485
FbaI	TGATCA	2 cut(s)	724, 1936
Fnu4HI	GCNGC	9 cut(s)	6, 212, 439, 813, 834, 1554, 1622, 1625, 2108
FokI	GGATG	6 cut(s)	107, 113, 119, 400, 815, 842
FriOI	GRGCYC	1 cut(s)	1098
Fsp4HI	GCNGC	9 cut(s)	6, 212, 439, 813, 834, 1554, 1622, 1625, 2108
FspBI	CTAG	4 cut(s)	378, 681, 1250, 1557
GlaI	GCGC	4 cut(s)	51, 193, 215, 816
GluI	GCNGC	9 cut(s)	6, 212, 439, 813, 834, 1554, 1622, 1625, 2108
GsuI	CTGGAG	2 cut(s)	1172, 1329
HaeII	RGCGCY	3 cut(s)	195, 217, 818
HaeIII	GGCC	7 cut(s)	235, 314, 704, 960, 1362, 1742, 1772
HapII	CCGG	2 cut(s)	1430, 1949
HgaI	GACGC	2 cut(s)	188, 1255
HhaI	GCGC	4 cut(s)	52, 194, 216, 817
Hin1I	GRCGYC	3 cut(s)	192, 214, 1833
Hin6I	GCGC	4 cut(s)	50, 192, 214, 815
HinP1I	GCGC	4 cut(s)	50, 192, 214, 815
HpaII	CCGG	2 cut(s)	1430, 1949
HphI	GGTGA	5 cut(s)	703, 793, 1310, 1832, 1916
Hpy99I	CGWCG	3 cut(s)	179, 182, 1988
HpyCH4III	ACNGT	3 cut(s)	358, 605, 1145
HpyCH4IV	ACGT	6 cut(s)	1027, 1257, 1278, 1833, 1986, 2120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 350, 482, 2104
HpyF3I	CTNAG	7 cut(s)	336, 764, 929, 1269, 1377, 1498, 2089
HpySE526I	ACGT	6 cut(s)	1027, 1257, 1278, 1833, 1986, 2120
Hsp92I	GRCGYC	3 cut(s)	192, 214, 1833
HspAI	GCGC	4 cut(s)	50, 192, 214, 815
KasI	GGCGCC	2 cut(s)	191, 213
Ksp22I	TGATCA	2 cut(s)	724, 1936
LguI	GCTCTTC	1 cut(s)	1356
LmnI	GCTCC	2 cut(s)	1375, 2095
Lsp1109I	GCAGC	7 cut(s)	425, 820, 824, 1540, 1633, 1636, 2094
LweI	GCATC	5 cut(s)	136, 820, 1204, 1636, 1818
MaeI	CTAG	4 cut(s)	378, 681, 1250, 1557
MaeII	ACGT	6 cut(s)	1027, 1257, 1278, 1833, 1986, 2120
MaeIII	GTNAC	2 cut(s)	1493, 1838
MflI	RGATCY	4 cut(s)	925, 1114, 1534, 2085
MhlI	GDGCHC	2 cut(s)	749, 1098
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
Mly113I	GGCGCC	2 cut(s)	192, 214
MlyI	GAGTC	6 cut(s)	125, 1424, 1460, 1469, 1490, 1775
MmeI	TCCRAC	2 cut(s)	1691, 1809
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	151
MroXI	GAANNNNTTC	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	7 cut(s)	423, 537, 1059, 1289, 1340, 2018, 2126
MslI	CAYNNNNRTG	1 cut(s)	1008
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	2 cut(s)	1430, 1949
MspR9I	CCNGG	1 cut(s)	1774
Mva1269I	GAATGC	1 cut(s)	1270
MvaI	CCWGG	1 cut(s)	1774
MvnI	CGCG	2 cut(s)	211, 414
MwoI	GCNNNNNNNGC	4 cut(s)	56, 350, 482, 2104
NarI	GGCGCC	2 cut(s)	192, 214
NcoI	CCATGG	3 cut(s)	226, 1706, 1755
NlaIV	GGNNCC	5 cut(s)	193, 215, 746, 1116, 1536
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	1493, 1838
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	2 cut(s)	1318, 1919
PaeR7I	CTCGAG	1 cut(s)	1712
PagI	TCATGA	2 cut(s)	1080, 1450
PceI	AGGCCT	1 cut(s)	1772
PciI	ACATGT	1 cut(s)	1314
PciSI	GCTCTTC	1 cut(s)	1356
PctI	GAATGC	1 cut(s)	1270
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	4 cut(s)	164, 409, 613, 1967
PflFI	GACNNNGTC	2 cut(s)	1459, 1763
PinAI	ACCGGT	1 cut(s)	1948
PkrI	GCNGC	9 cut(s)	7, 213, 440, 814, 835, 1555, 1623, 1626, 2109
PleI	GAGTC	6 cut(s)	125, 1423, 1460, 1468, 1490, 1775
PluTI	GGCGCC	2 cut(s)	195, 217
PpsI	GAGTC	6 cut(s)	125, 1423, 1460, 1468, 1490, 1775
Ppu21I	YACGTR	1 cut(s)	1028
PpuMI	RGGWCCY	1 cut(s)	758
PscI	ACATGT	1 cut(s)	1314
PshAI	GACNNNNGTC	1 cut(s)	1836
Psp124BI	GAGCTC	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	1772
PspGI	CCWGG	1 cut(s)	1772
PspN4I	GGNNCC	5 cut(s)	193, 215, 746, 1116, 1536
PspPI	GGNCC	6 cut(s)	233, 702, 758, 958, 1439, 1872
PspPPI	RGGWCCY	1 cut(s)	758
PspXI	VCTCGAGB	1 cut(s)	1712
PsrI	GAACNNNNNNTAC	2 cut(s)	316, 348
PstNI	CAGNNNCTG	2 cut(s)	1217, 1630
PsuI	RGATCY	4 cut(s)	925, 1114, 1534, 2085
PsyI	GACNNNGTC	2 cut(s)	1459, 1763
RsaI	GTAC	4 cut(s)	583, 1319, 1474, 2028
RsaNI	GTAC	4 cut(s)	582, 1318, 1473, 2027
RseI	CAYNNNNRTG	1 cut(s)	1008
SacI	GAGCTC	1 cut(s)	1098
SapI	GCTCTTC	1 cut(s)	1356
SaqAI	TTAA	7 cut(s)	423, 537, 1059, 1289, 1340, 2018, 2126
SatI	GCNGC	9 cut(s)	6, 212, 439, 813, 834, 1554, 1622, 1625, 2108
Sau96I	GGNCC	6 cut(s)	233, 702, 758, 958, 1439, 1872
SchI	GAGTC	6 cut(s)	125, 1424, 1460, 1469, 1490, 1775
ScrFI	CCNGG	1 cut(s)	1774
SduI	GDGCHC	2 cut(s)	749, 1098
SfaNI	GCATC	5 cut(s)	136, 820, 1204, 1636, 1818
SfcI	CTRYAG	1 cut(s)	646
SfoI	GGCGCC	2 cut(s)	193, 215
Sfr274I	CTCGAG	1 cut(s)	1712
SinI	GGWCC	3 cut(s)	758, 1439, 1872
SlaI	CTCGAG	1 cut(s)	1712
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	5 cut(s)	1489, 1712, 2031, 2072, 2099
SmoI	CTYRAG	5 cut(s)	1489, 1712, 2031, 2072, 2099
SseBI	AGGCCT	1 cut(s)	1772
SsiI	CCGC	7 cut(s)	211, 344, 414, 492, 1274, 1843, 1875
SspDI	GGCGCC	2 cut(s)	191, 213
SspMI	CTAG	4 cut(s)	378, 681, 1250, 1557
SstI	GAGCTC	1 cut(s)	1098
StuI	AGGCCT	1 cut(s)	1772
StyD4I	CCNGG	1 cut(s)	1772
StyI	CCWWGG	6 cut(s)	168, 226, 680, 1419, 1706, 1755
TaaI	ACNGT	3 cut(s)	358, 605, 1145
TaiI	ACGT	6 cut(s)	1030, 1260, 1281, 1836, 1989, 2123
TaqI	TCGA	9 cut(s)	975, 999, 1090, 1425, 1713, 1767, 1779, 1791, 1921
TaqII	GACCGA	1 cut(s)	1472
TatI	WGTACW	2 cut(s)	581, 1317
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	4 cut(s)	164, 409, 613, 1967
Tru1I	TTAA	7 cut(s)	423, 537, 1059, 1289, 1340, 2018, 2126
Tru9I	TTAA	7 cut(s)	423, 537, 1059, 1289, 1340, 2018, 2126
TscAI	CASTG	7 cut(s)	322, 361, 937, 1300, 1312, 1939, 1946
TseFI	GTSAC	2 cut(s)	1493, 1838
TseI	GCWGC	8 cut(s)	5, 438, 812, 833, 1553, 1621, 1624, 2107
Tsp45I	GTSAC	2 cut(s)	1493, 1838
TspDTI	ATGAA	5 cut(s)	761, 781, 1494, 1786, 2069
TspRI	CASTG	7 cut(s)	322, 361, 937, 1300, 1312, 1939, 1946
Tth111I	GACNNNGTC	2 cut(s)	1459, 1763
VpaK11BI	GGWCC	3 cut(s)	758, 1439, 1872
XapI	RAATTY	5 cut(s)	554, 719, 788, 1507, 2078
XceI	RCATGY	2 cut(s)	1318, 1919
XhoI	CTCGAG	1 cut(s)	1712
XmaJI	CCTAGG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	4 cut(s)	378, 681, 1250, 1557
ZraI	GACGTC	1 cut(s)	1834
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.