AT2G24990

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
10625163 .. 10628598
3436 bp
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UTR
Exon/CDS
Intron
AT2G24990.1

Sequence Viewer

Length: 1614 bp
ATGGAGGAAGTAGTGTTAGTAACAGAGCCACCACCCACGATTCCTCCGGTAGTAGAATACGAAGAAGAGCATGACGATGACGACGACGACGATCTCTCTCTTTCATCGGATTCCGATATCGCTGAAGCTCTTGATTGGCTCGACGGAAAAGACGATGACGAGCTAATAGGTGGTGGCTTTTCCCTCCATGCTCGTCGTCCTAATGCTCACGGTGGACATGGTTCACGTCCTAACTCTAGTTCTCTTCAACCTATATCAAATAAAGCCCAGAAGCTTACTAGTCATGTTCGTGCTTCTCCTTTAGAGGGATGGGAAGGAAGAGTTAAAGTTGGGATGTCGAATTCTGTGACAACTGCGATTCGTGGAAGTCTTAGAGATACAGAAATTGGGAGAAGTAGGAATACTGATAAAGCTGACCGGGCAACAGTTGAACAGGCTCTTGATCCAAGGACTCGTATGGTTTTGTTTAGAATGCTTAACCGGGGTGTGTTTAACGATGTTAATGGATGTATTTCGACAGGCAAAGAAGCTAATGTTTATCATGCCACAAAATCTGACGGTTCGGAACTTGCAATAAAAGTGTACAAGACATCTGTTCTGGTTTTTAAGGATCGAGATCGATATGTACAAGGAGATTACCGTTTTAGATATGGCTACTGTCGTCACAATCCCCGGAAGATGGTGAAGACATGGGCTGAAAAAGAACAGAGAAATCTTAAGAGGCTTCATGCAGCTGGAATTAGGTGTCCAGCTGTTATACTTCTTCGCCTTCATGTGCTAGTCATGGAGTTTATAGGGAGGGATGGTTGGGCTGCACCGCGTCTCAAGGATGCTGCATTATCTCTAGACAAGTTGCGCGAGTGCTACCTAGAGTTGATAATTCAAATGCGAGTATTATATCAGAAGTGCAAATTGGTGCATGGAGATCTCAGTGAGTATAACATACTTTATTTTGAGGGGCACCTTTACATAATTGATGTTTCTCAATCTGTGGATCTGGACCATCCTCTTGCACTCAACTTTCTACGGGAAGATTGTGACCATGTCTCGGATTTTTTCAAAAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGGCAATTACAGACGAAAATGTTGATAGCTATTTGGAAGAGGTCCAACGAAAAGTTATAGAGCGAGGAGAGATATCCGTAGAGGATGAAATCGCGGATTCAGTATTCATGAAGTCATACATACCGAAATCTCTGGATGCTGTGAACAACCCTGAGGCTGACGTGGCTAAGATAACAAGCGGGCAGGACACAGGAGACATGCTATACCAAACGATAACGGGGCTTAAGGATGCTCTTCCTAAAATAGAAGAGCAGAAAATAGAGGTGAATGATGAAGAGAAAGAAGAGGAAGGAGAGGAAGAAGAAGACGGAGAAAGTGAAGAAGGAAGTGAGGAAGAAGAGAGTGAAGAAGAATTGGGTCATGAAGACAAGAAAGCTGCAAGGAAAGAGCACAAGAAGAAAGTGAAAGAGGAGAAACGAGAGTCTAGGAAGACGAAGACACCCAAATCTGTCAAGAAGCGAAAGAAGAAAGTCTCTAAACCACACAAGACTCGTTAA

Protein Analysis

537

Amino Acids

61.08

Weight (kDa)

5.33

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIO1 PF01163 178 - 365 4e-73 RIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 960
AccII CGCG 3 cut(s) 820, 858, 1211
AciI CCGC 3 cut(s) 818, 1211, 1296
AclWI GGATC 3 cut(s) 437, 618, 1002
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 584, 627
AfiI CCNNNNNNNGG 3 cut(s) 305, 679, 1048
AflII CTTAAG 2 cut(s) 716, 1340
AgsI TTSAA 4 cut(s) 248, 431, 884, 1060
AhlI ACTAGT 1 cut(s) 278
AjiI CACGTC 2 cut(s) 227, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
Alw21I GWGCWC 1 cut(s) 1509
Alw26I GTCTC 4 cut(s) 827, 1051, 1305, 1594
AlwI GGATC 3 cut(s) 437, 618, 1002
ApeKI GCWGC 4 cut(s) 731, 812, 833, 1493
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 2 cut(s) 1000, 1159
AsuC2I CCSGG 4 cut(s) 419, 482, 673, 1118
AsuHPI GGTGA 2 cut(s) 694, 1393
AvaII GGWCC 2 cut(s) 1000, 1159
AxyI CCTNAGG 1 cut(s) 1269
BaeGI GKGCMC 1 cut(s) 963
BanI GGYRCC 1 cut(s) 960
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
BbsI GAAGAC 5 cut(s) 692, 1428, 1488, 1553, 1559
Bbv12I GWGCWC 1 cut(s) 1509
BbvI GCAGC 4 cut(s) 743, 799, 820, 1480
BccI CCATC 4 cut(s) 303, 673, 797, 1011
BcnI CCSGG 4 cut(s) 419, 482, 673, 1118
BcoDI GTCTC 4 cut(s) 827, 1051, 1305, 1594
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 6 cut(s) 237, 279, 779, 845, 869, 1542
BfrI CTTAAG 2 cut(s) 716, 1340
BglII AGATCT 1 cut(s) 925
BisI GCNGC 4 cut(s) 732, 813, 834, 1494
BlsI GCNGC 4 cut(s) 733, 814, 835, 1495
Bme1390I CCNGG 4 cut(s) 419, 482, 673, 1118
Bme18I GGWCC 2 cut(s) 1000, 1159
BmgBI CACGTC 2 cut(s) 227, 1279
BmgT120I GGNCC 2 cut(s) 1000, 1159
BmiI GGNNCC 1 cut(s) 962
BmrFI CCNGG 4 cut(s) 419, 482, 673, 1118
BmsI GCATC 3 cut(s) 820, 1243, 1336
BpiI GAAGAC 5 cut(s) 692, 1428, 1488, 1553, 1559
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 4 cut(s) 419, 482, 673, 1118
Bsa29I ATCGAT 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 446, 481, 671
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 790, 820
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 679, 1048
Bse21I CCTNAGG 1 cut(s) 1269
Bse8I GATNNNNATC 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 619
BseDI CCNNGG 3 cut(s) 446, 481, 671
BseGI GGATG 9 cut(s) 314, 339, 512, 808, 835, 1003, 1207, 1258, 1351
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 305, 679, 1048
BseMII CTCAG 2 cut(s) 943, 1260
BseRI GAGGAG 2 cut(s) 1197, 1541
BseSI GKGCMC 1 cut(s) 963
BseXI GCAGC 4 cut(s) 743, 799, 820, 1480
BsgI GTGCAG 1 cut(s) 798
Bsh1236I CGCG 3 cut(s) 820, 858, 1211
BshNI GGYRCC 1 cut(s) 960
BshVI ATCGAT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 1509
BsiSI CCGG 5 cut(s) 47, 418, 481, 673, 1118
BslI CCNNNNNNNGG 3 cut(s) 305, 679, 1048
BsmAI GTCTC 4 cut(s) 827, 1051, 1305, 1594
BsmBI CGTCTC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 963, 1509
Bsp1407I TGTACA 2 cut(s) 582, 625
Bsp143I GATC 6 cut(s) 91, 442, 610, 616, 925, 994
BspACI CCGC 3 cut(s) 818, 1211, 1296
BspCNI CTCAG 2 cut(s) 942, 1261
BspDI ATCGAT 1 cut(s) 619
BspFNI CGCG 3 cut(s) 820, 858, 1211
BspHI TCATGA 3 cut(s) 1080, 1224, 1477
BspLI GGNNCC 1 cut(s) 962
BspPI GGATC 3 cut(s) 437, 618, 1002
BspQI GCTCTTC 3 cut(s) 60, 1356, 1359
BspT107I GGYRCC 1 cut(s) 960
BspTI CTTAAG 2 cut(s) 716, 1340
BsrGI TGTACA 2 cut(s) 582, 625
BssECI CCNNGG 3 cut(s) 446, 481, 671
BssMI GATC 6 cut(s) 91, 442, 610, 616, 925, 994
BssT1I CCWWGG 1 cut(s) 446
Bst4CI ACNGT 5 cut(s) 212, 427, 560, 641, 659
Bst6I CTCTTC 9 cut(s) 60, 249, 313, 1149, 1356, 1359, 1386, 1395, 1449
BstAFI CTTAAG 2 cut(s) 716, 1340
BstAUI TGTACA 2 cut(s) 582, 625
BstC8I GCNNGC 1 cut(s) 1298
BstDEI CTNAG 4 cut(s) 371, 929, 1269, 1284
BstF5I GGATG 9 cut(s) 314, 339, 512, 808, 835, 1003, 1207, 1258, 1351
BstFNI CGCG 3 cut(s) 820, 858, 1211
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 6 cut(s) 94, 445, 613, 619, 928, 997
BstMAI GTCTC 4 cut(s) 827, 1051, 1305, 1594
BstMBI GATC 6 cut(s) 91, 442, 610, 616, 925, 994
BstMWI GCNNNNNNNGC 2 cut(s) 419, 1280
BstNSI RCATGY 1 cut(s) 1318
BstSCI CCNGG 4 cut(s) 417, 480, 671, 1116
BstSLI GKGCMC 1 cut(s) 963
BstUI CGCG 3 cut(s) 820, 858, 1211
BstV1I GCAGC 4 cut(s) 743, 799, 820, 1480
BstV2I GAAGAC 5 cut(s) 692, 1428, 1488, 1553, 1559
BstX2I RGATCY 2 cut(s) 925, 994
BstYI RGATCY 2 cut(s) 925, 994
Bsu15I ATCGAT 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 1269
BsuTUI ATCGAT 1 cut(s) 619
BtrI CACGTC 2 cut(s) 227, 1279
BtsCI GGATG 9 cut(s) 314, 339, 512, 808, 835, 1003, 1207, 1258, 1351
BtsIMutI CAGTG 1 cut(s) 937
Cac8I GCNNGC 1 cut(s) 1298
CciI TCATGA 3 cut(s) 1080, 1224, 1477
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 2 cut(s) 1000, 1159
ClaI ATCGAT 1 cut(s) 619
CseI GACGC 1 cut(s) 809
Csp6I GTAC 2 cut(s) 583, 626
CviQI GTAC 2 cut(s) 583, 626
DdeI CTNAG 4 cut(s) 371, 929, 1269, 1284
DpnI GATC 6 cut(s) 93, 444, 612, 618, 927, 996
DpnII GATC 6 cut(s) 91, 442, 610, 616, 925, 994
Eam1104I CTCTTC 9 cut(s) 60, 249, 313, 1149, 1356, 1359, 1386, 1395, 1449
EarI CTCTTC 9 cut(s) 60, 249, 313, 1149, 1356, 1359, 1386, 1395, 1449
Eco130I CCWWGG 1 cut(s) 446
Eco32I GATATC 2 cut(s) 118, 1191
Eco47I GGWCC 2 cut(s) 1000, 1159
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 1269
EcoRI GAATTC 1 cut(s) 340
EcoRV GATATC 2 cut(s) 118, 1191
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 827
FauI CCCGC 1 cut(s) 1289
Fnu4HI GCNGC 4 cut(s) 732, 813, 834, 1494
FokI GGATG 9 cut(s) 321, 346, 519, 815, 842, 990, 1214, 1265, 1358
Fsp4HI GCNGC 4 cut(s) 732, 813, 834, 1494
FspBI CTAG 6 cut(s) 237, 279, 779, 845, 869, 1542
GlaI GCGC 1 cut(s) 857
GluI GCNGC 4 cut(s) 732, 813, 834, 1494
HapII CCGG 5 cut(s) 47, 418, 481, 673, 1118
HgaI GACGC 1 cut(s) 809
HhaI GCGC 1 cut(s) 858
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 7 cut(s) 40, 110, 358, 451, 1214, 1538, 1606
HpaII CCGG 5 cut(s) 47, 418, 481, 673, 1118
HphI GGTGA 2 cut(s) 694, 1393
Hpy166II GTNNAC 5 cut(s) 215, 224, 583, 1114, 1261
Hpy188I TCNGA 6 cut(s) 109, 115, 556, 565, 903, 1051
Hpy8I GTNNAC 5 cut(s) 215, 224, 583, 1114, 1261
Hpy99I CGWCG 5 cut(s) 86, 89, 92, 146, 198
HpyAV CCTTC 4 cut(s) 308, 779, 1400, 1433
HpyCH4III ACNGT 5 cut(s) 212, 427, 560, 641, 659
HpyCH4IV ACGT 2 cut(s) 226, 1278
HpyCH4V TGCA 8 cut(s) 572, 731, 815, 836, 909, 919, 1013, 1496
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 1280
HpyF3I CTNAG 4 cut(s) 371, 929, 1269, 1284
HpySE526I ACGT 2 cut(s) 226, 1278
HspAI GCGC 1 cut(s) 856
Kzo9I GATC 6 cut(s) 91, 442, 610, 616, 925, 994
LguI GCTCTTC 3 cut(s) 60, 1356, 1359
LmnI GCTCC 1 cut(s) 1093
Lsp1109I GCAGC 4 cut(s) 743, 799, 820, 1480
LweI GCATC 3 cut(s) 820, 1243, 1336
MaeI CTAG 6 cut(s) 237, 279, 779, 845, 869, 1542
MaeII ACGT 2 cut(s) 226, 1278
MaeIII GTNAC 4 cut(s) 19, 346, 662, 1037
MalI GATC 6 cut(s) 93, 444, 612, 618, 927, 996
MboI GATC 6 cut(s) 91, 442, 610, 616, 925, 994
MflI RGATCY 2 cut(s) 925, 994
MhlI GDGCHC 2 cut(s) 963, 1509
MluCI AATT 8 cut(s) 340, 384, 738, 879, 911, 972, 1122, 1469
MlyI GAGTC 3 cut(s) 445, 1547, 1600
MmeI TCCRAC 1 cut(s) 1186
MseI TTAA 8 cut(s) 324, 477, 492, 501, 606, 717, 1341, 1612
MslI CAYNNNNRTG 2 cut(s) 75, 288
MspA1I CMGCKG 2 cut(s) 734, 752
MspCI CTTAAG 2 cut(s) 716, 1340
MspI CCGG 5 cut(s) 47, 418, 481, 673, 1118
MspR9I CCNGG 4 cut(s) 419, 482, 673, 1118
Mva1269I GAATGC 1 cut(s) 477
MvnI CGCG 3 cut(s) 820, 858, 1211
MwoI GCNNNNNNNGC 2 cut(s) 419, 1280
NciI CCSGG 4 cut(s) 419, 482, 673, 1118
NdeII GATC 6 cut(s) 91, 442, 610, 616, 925, 994
NlaIV GGNNCC 1 cut(s) 962
NmuCI GTSAC 3 cut(s) 346, 662, 1037
NspI RCATGY 1 cut(s) 1318
PagI TCATGA 3 cut(s) 1080, 1224, 1477
PciSI GCTCTTC 3 cut(s) 60, 1356, 1359
PcsI WCGNNNNNNNCGW 3 cut(s) 81, 87, 150
PctI GAATGC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 40, 110, 358, 1214
PflFI GACNNNGTC 1 cut(s) 1043
PkrI GCNGC 4 cut(s) 733, 814, 835, 1495
PleI GAGTC 3 cut(s) 445, 1546, 1600
PpsI GAGTC 3 cut(s) 445, 1546, 1600
PspN4I GGNNCC 1 cut(s) 962
PspPI GGNCC 2 cut(s) 1000, 1159
PsuI RGATCY 2 cut(s) 925, 994
PsyI GACNNNGTC 1 cut(s) 1043
PvuII CAGCTG 2 cut(s) 734, 752
RsaI GTAC 2 cut(s) 584, 627
RsaNI GTAC 2 cut(s) 583, 626
RseI CAYNNNNRTG 2 cut(s) 75, 288
SapI GCTCTTC 3 cut(s) 60, 1356, 1359
SaqAI TTAA 8 cut(s) 324, 477, 492, 501, 606, 717, 1341, 1612
SatI GCNGC 4 cut(s) 732, 813, 834, 1494
Sau3AI GATC 6 cut(s) 91, 442, 610, 616, 925, 994
Sau96I GGNCC 2 cut(s) 1000, 1159
SchI GAGTC 3 cut(s) 445, 1547, 1600
ScrFI CCNGG 4 cut(s) 419, 482, 673, 1118
SduI GDGCHC 2 cut(s) 963, 1509
SfaNI GCATC 3 cut(s) 820, 1243, 1336
SinI GGWCC 2 cut(s) 1000, 1159
SmiMI CAYNNNNRTG 2 cut(s) 75, 288
SmlI CTYRAG 3 cut(s) 716, 824, 1340
SmoI CTYRAG 3 cut(s) 716, 824, 1340
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 8 cut(s) 340, 384, 738, 879, 911, 972, 1122, 1469
SsiI CCGC 3 cut(s) 818, 1211, 1296
SspMI CTAG 6 cut(s) 237, 279, 779, 845, 869, 1542
StyD4I CCNGG 4 cut(s) 417, 480, 671, 1116
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 5 cut(s) 212, 427, 560, 641, 659
TaiI ACGT 2 cut(s) 229, 1281
TaqI TCGA 5 cut(s) 141, 338, 515, 613, 619
TasI AATT 8 cut(s) 340, 384, 738, 879, 911, 972, 1122, 1469
TatI WGTACW 2 cut(s) 582, 625
TfiI GAWTC 4 cut(s) 40, 110, 358, 1214
Tru1I TTAA 8 cut(s) 324, 477, 492, 501, 606, 717, 1341, 1612
Tru9I TTAA 8 cut(s) 324, 477, 492, 501, 606, 717, 1341, 1612
TscAI CASTG 1 cut(s) 937
TseFI GTSAC 3 cut(s) 346, 662, 1037
TseI GCWGC 4 cut(s) 731, 812, 833, 1493
Tsp45I GTSAC 3 cut(s) 346, 662, 1037
TspDTI ATGAA 9 cut(s) 93, 716, 761, 1096, 1213, 1218, 1241, 1404, 1494
TspGWI ACGGA 3 cut(s) 159, 1183, 1440
TspRI CASTG 1 cut(s) 937
Tth111I GACNNNGTC 1 cut(s) 1043
Vha464I CTTAAG 2 cut(s) 716, 1340
VpaK11BI GGWCC 2 cut(s) 1000, 1159
XapI RAATTY 1 cut(s) 340
XbaI TCTAGA 1 cut(s) 844
XceI RCATGY 1 cut(s) 1318
XspI CTAG 6 cut(s) 237, 279, 779, 845, 869, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.