FvH4_5g16770

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
9570781 .. 9576178
5398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16770.t3

Sequence Viewer

Length: 1527 bp
ATGCTGCCGGTCCCTGAGTTCCACTCCCCCATCTCTTCAAAAATTCGTGTGAAGGCGGCAGCCATGTCCAAGTACGAGGAGTATTTGGATTACGATGATGAACCACAAGGTTCTTTCCCAATCAATTGTAGACGTCCCAATGCTCACGGAGGCCTTCATCGTCCTAATAACTCAACCCTTCAACCTCTCTCTAATAGATACCAGAAATATTCCGCTCGAATCCGAGTTTCACCTTTAGAGGAGTGGGAAGGTAAGTTGGATATTGGCATGTGCAACAATGTGACAACTTCCATTCGAGGGTTTATTCGGGAGACAGCCATCGGTAGAACCAAAACTACCGATAGAGCTGATCGTGCTACTGTTGAGAAGGTATTGGATTTCAAAACCATTTTCATTGTACGCAAAATGATGCACCGTCATGTATACGAAGTTATTCACGGCTGCATTTCCACTGGGAAAGAAGCACATGTTTATCATGCAATCGATTCTGATGGCAAAGAACTGGCAATCAAAGTGTTCAAAACGTCCGTTCTGGATTTCAAGGACAGGGCAAAATACGTACAAGGAGACTTTCGATTCAGACGCGTATTTAGAACGAAAAATCCCAGGAAAATGATGAAGACATTGGCTGAGAAAGAAATGAGGAATCTGATGAGGATAAAGGACGCAGGAATTAGATGCCCTACTGTACGTGATATAAAACATCATGTACTGGTCATGGATTTCATAGGTAAGGGAGGGTGGGCAGCACCTCTTCTGAATGATGCTGCATTATCATTAGACAAGCTGCGAGAAGGTTATAGGGAGATAATAATTGCCATGCGAATGTTATATCAGAAGGCCAAGCTGGTGCATACCGACCTCAGTGAATTCAACATACTTTATTTTGAGGGGCACCTATACATTATTGATGTTTCTCAAGCAGTTGAGCTTTTTGACGATAATGCCAATGATTTCCTACGTCAGGATTGTCTCCATGTCTCGGGTTTCTTCAAAAAACGTGGTGTAGCAGTTATGACAGTTAGGGAGCTCTTTGATTTTATAGTTGATCCAAGTATTGCTGAGGAAGCAGTGGACAGTTATTTGGATGAGGTACAACAAAAAATTGTGAACAGAGGAGATATATCTGTTGTGGATGAAATTGCTGAATCTGTATTTTTGCAGGCATACATTCCAAGTACACTAAACCAGGTAATGGAAGTTGAAGCAGATGTACTGCGGTTAACTAGTGGTGAGGATACTGAAGACATGTACTATAAAACTATTACAGGACTAAGGCAGGCTCTTTCTTGTGTCCCACCATCTCAACCTGAGAGTGAATCAGACTATGGTGATGATGAAGACGTCTCAATAGATTCACAATCCTCATCGGGAATCGAGGCAAAGGAACCTCTTGATAAAAAAGTTGCCAGAAAAGAAAACAAGAAGAAAGTTAAAGAAGAGAAGAAGGAAGCTAGGAAACACAAATTGCCAAAGGCTGTAAAGAAAAGAAGAAAGAAGTTGGCCCAAGGTGGAAACAGACGGTAG

Protein Analysis

509

Amino Acids

58.19

Weight (kDa)

8.95

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 60 - 222 3.3e-07 Protein kinase domain
RIO1 PF01163 68 - 254 1.7e-63 RIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 136, 1347
AccB1I GGYRCC 1 cut(s) 894
AccB7I CCANNNNNTGG 1 cut(s) 1195
AccBSI CCGCTC 1 cut(s) 215
AccI GTMKAC 2 cut(s) 130, 423
AccII CGCG 1 cut(s) 585
AciI CCGC 3 cut(s) 56, 213, 1219
AclWI GGATC 1 cut(s) 1043
AcsI RAATTY 2 cut(s) 42, 869
AcuI CTGAAG 1 cut(s) 1263
AcyI GRCGYC 2 cut(s) 133, 1344
AfaI GTAC 9 cut(s) 74, 399, 561, 690, 711, 1095, 1180, 1215, 1253
AfiI CCNNNNNNNGG 4 cut(s) 297, 964, 982, 1195
AflIII ACRYGT 3 cut(s) 466, 583, 1248
AgsI TTSAA 8 cut(s) 39, 182, 382, 520, 541, 874, 994, 1205
AhlI ACTAGT 1 cut(s) 1226
AjnI CCWGG 2 cut(s) 605, 1188
AloI GAACNNNNNNTCC 2 cut(s) 586, 618
AluBI AGCT 6 cut(s) 347, 787, 847, 931, 1030, 1454
AluI AGCT 6 cut(s) 347, 787, 847, 931, 1030, 1454
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 5 cut(s) 305, 561, 977, 985, 1351
AlwI GGATC 1 cut(s) 1043
Ama87I CYCGRG 1 cut(s) 982
AoxI GGCC 3 cut(s) 151, 840, 1503
ApeKI GCWGC 6 cut(s) 4, 59, 441, 746, 767, 787
ApoI RAATTY 2 cut(s) 42, 869
Asp700I GAANNNNTTC 1 cut(s) 432
AspS9I GGNCC 2 cut(s) 10, 1504
AsuHPI GGTGA 3 cut(s) 222, 1244, 1343
AvaI CYCGRG 1 cut(s) 982
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 897
BanI GGYRCC 1 cut(s) 894
BanII GRGCYC 1 cut(s) 1032
BarI GAAGNNNNNNTAC 2 cut(s) 1197, 1229
BbsI GAAGAC 3 cut(s) 626, 1251, 1347
Bbv12I GWGCWC 1 cut(s) 1032
BbvCI CCTCAGC 1 cut(s) 1062
BbvI GCAGC 5 cut(s) 71, 428, 754, 758, 774
BccI CCATC 4 cut(s) 38, 326, 485, 1309
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 2 cut(s) 607, 1190
BciVI GTATCC 1 cut(s) 1231
BcoDI GTCTC 5 cut(s) 305, 561, 977, 985, 1351
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 2 cut(s) 1227, 1455
BfuI GTATCC 1 cut(s) 1231
BisI GCNGC 7 cut(s) 5, 57, 60, 442, 747, 768, 788
BlsI GCNGC 7 cut(s) 6, 58, 61, 443, 748, 769, 789
Bme1390I CCNGG 2 cut(s) 607, 1190
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 982
BmgT120I GGNCC 2 cut(s) 10, 1504
BmiI GGNNCC 3 cut(s) 12, 896, 1389
BmrFI CCNGG 2 cut(s) 607, 1190
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 3 cut(s) 399, 668, 754
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 3 cut(s) 626, 1251, 1347
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 903
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 2 cut(s) 559, 692
BsaHI GRCGYC 2 cut(s) 133, 1344
BsaJI CCNNGG 2 cut(s) 605, 1507
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 964, 982, 1195
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 3 cut(s) 457, 507, 717
BseBI CCWGG 2 cut(s) 607, 1190
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 605, 1507
BseGI GGATG 2 cut(s) 1093, 1141
BseLI CCNNNNNNNGG 4 cut(s) 297, 964, 982, 1195
BseMII CTCAG 5 cut(s) 6, 621, 877, 1053, 1302
BseNI ACTGG 3 cut(s) 457, 507, 717
BseRI GAGGAG 3 cut(s) 92, 254, 1131
BseSI GKGCMC 1 cut(s) 897
BseXI GCAGC 5 cut(s) 71, 428, 754, 758, 774
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 153, 842, 1505
BshNI GGYRCC 1 cut(s) 894
BshVI ATCGAT 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 1032
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 120, 1280
BslI CCNNNNNNNGG 4 cut(s) 297, 964, 982, 1195
BsmAI GTCTC 5 cut(s) 305, 561, 977, 985, 1351
BsmBI CGTCTC 1 cut(s) 1351
BsmFI GGGAC 2 cut(s) 120, 1280
BsnI GGCC 3 cut(s) 153, 842, 1505
BsoBI CYCGRG 1 cut(s) 982
Bsp1286I GDGCHC 2 cut(s) 897, 1032
Bsp143I GATC 2 cut(s) 349, 1048
BspACI CCGC 3 cut(s) 56, 213, 1219
BspANI GGCC 3 cut(s) 153, 842, 1505
BspCNI CTCAG 5 cut(s) 7, 622, 876, 1054, 1303
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 12, 896, 1389
BspPI GGATC 1 cut(s) 1043
BspT107I GGYRCC 1 cut(s) 894
BsrBI CCGCTC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 3 cut(s) 457, 507, 717
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 605, 1507
BssMI GATC 2 cut(s) 349, 1048
BssNAI GTATAC 1 cut(s) 424
BssNI GRCGYC 2 cut(s) 133, 1344
BssT1I CCWWGG 1 cut(s) 1507
Bst1107I GTATAC 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 607, 1190
Bst4CI ACNGT 6 cut(s) 361, 416, 688, 1021, 1079, 1524
Bst6I CTCTTC 3 cut(s) 40, 759, 1434
BstACI GRCGYC 2 cut(s) 133, 1344
BstBAI YACGTR 2 cut(s) 559, 692
BstC8I GCNNGC 2 cut(s) 1164, 1281
BstDEI CTNAG 6 cut(s) 15, 630, 863, 1062, 1274, 1311
BstENI CCTNNNNNAGG 1 cut(s) 962
BstF5I GGATG 2 cut(s) 1093, 1141
BstFNI CGCG 1 cut(s) 585
BstKTI GATC 2 cut(s) 352, 1051
BstMAI GTCTC 5 cut(s) 305, 561, 977, 985, 1351
BstMBI GATC 2 cut(s) 349, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 353, 1067
BstNI CCWGG 2 cut(s) 607, 1190
BstNSI RCATGY 3 cut(s) 271, 470, 1252
BstSCI CCNGG 2 cut(s) 605, 1188
BstSLI GKGCMC 1 cut(s) 897
BstSNI TACGTA 1 cut(s) 559
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 5 cut(s) 71, 428, 754, 758, 774
BstV2I GAAGAC 3 cut(s) 626, 1251, 1347
BstZ17I GTATAC 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 483
BsuI GTATCC 1 cut(s) 1231
BsuRI GGCC 3 cut(s) 153, 842, 1505
BsuTUI ATCGAT 1 cut(s) 483
BtsCI GGATG 2 cut(s) 1093, 1141
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 3 cut(s) 450, 871, 1077
Cac8I GCNNGC 2 cut(s) 1164, 1281
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 10, 1504
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 2 cut(s) 591, 674
CsiI ACCWGGT 1 cut(s) 1188
Csp6I GTAC 9 cut(s) 73, 398, 560, 689, 710, 1094, 1179, 1214, 1252
CspCI CAANNNNNGTGG 2 cut(s) 982, 1017
CviQI GTAC 9 cut(s) 73, 398, 560, 689, 710, 1094, 1179, 1214, 1252
DdeI CTNAG 6 cut(s) 15, 630, 863, 1062, 1274, 1311
DpnI GATC 2 cut(s) 351, 1050
DpnII GATC 2 cut(s) 349, 1048
Eam1104I CTCTTC 3 cut(s) 40, 759, 1434
EarI CTCTTC 3 cut(s) 40, 759, 1434
Ecl136II GAGCTC 1 cut(s) 1030
Eco105I TACGTA 1 cut(s) 559
Eco130I CCWWGG 1 cut(s) 1507
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 1032
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 1030
Eco57I CTGAAG 1 cut(s) 1263
Eco88I CYCGRG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 1030
EcoNI CCTNNNNNAGG 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 605, 1188
EcoT14I CCWWGG 1 cut(s) 1507
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 1 cut(s) 1507
Esp3I CGTCTC 1 cut(s) 1351
FaqI GGGAC 2 cut(s) 120, 1280
FblI GTMKAC 2 cut(s) 130, 423
Fnu4HI GCNGC 7 cut(s) 5, 57, 60, 442, 747, 768, 788
FokI GGATG 2 cut(s) 1100, 1148
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 7 cut(s) 5, 57, 60, 442, 747, 768, 788
FspBI CTAG 2 cut(s) 1227, 1455
GluI GCNGC 7 cut(s) 5, 57, 60, 442, 747, 768, 788
HaeIII GGCC 3 cut(s) 153, 842, 1505
HapII CCGG 1 cut(s) 8
HgaI GACGC 2 cut(s) 591, 674
Hin1I GRCGYC 2 cut(s) 133, 1344
HincII GTYRAC 1 cut(s) 1224
HindII GTYRAC 1 cut(s) 1224
HinfI GANTC 8 cut(s) 219, 485, 576, 646, 1148, 1319, 1355, 1374
HpaI GTTAAC 1 cut(s) 1224
HpaII CCGG 1 cut(s) 8
HphI GGTGA 3 cut(s) 222, 1244, 1343
Hpy166II GTNNAC 6 cut(s) 131, 424, 1075, 1111, 1181, 1224
Hpy188I TCNGA 7 cut(s) 224, 490, 581, 651, 759, 837, 1324
Hpy188III TCNNGA 5 cut(s) 308, 533, 965, 1371, 1394
Hpy8I GTNNAC 6 cut(s) 131, 424, 1075, 1111, 1181, 1224
HpyAV CCTTC 8 cut(s) 46, 164, 188, 242, 361, 788, 832, 1441
HpyCH4III ACNGT 6 cut(s) 361, 416, 688, 1021, 1079, 1524
HpyCH4IV ACGT 7 cut(s) 133, 524, 558, 691, 961, 1000, 1344
HpyCH4V TGCA 7 cut(s) 273, 412, 444, 479, 770, 853, 1162
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 1067
HpyF3I CTNAG 6 cut(s) 15, 630, 863, 1062, 1274, 1311
HpySE526I ACGT 7 cut(s) 133, 524, 558, 691, 961, 1000, 1344
Hsp92I GRCGYC 2 cut(s) 133, 1344
KspAI GTTAAC 1 cut(s) 1224
Kzo9I GATC 2 cut(s) 349, 1048
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 5 cut(s) 71, 428, 754, 758, 774
LweI GCATC 3 cut(s) 399, 668, 754
MabI ACCWGGT 1 cut(s) 1188
MaeI CTAG 2 cut(s) 1227, 1455
MaeII ACGT 7 cut(s) 133, 524, 558, 691, 961, 1000, 1344
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 351, 1050
MbiI CCGCTC 1 cut(s) 215
MboI GATC 2 cut(s) 349, 1048
MfeI CAATTG 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 897, 1032
MluCI AATT 8 cut(s) 42, 124, 672, 813, 869, 1104, 1140, 1466
MluI ACGCGT 1 cut(s) 583
MmeI TCCRAC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 432
MseI TTAA 2 cut(s) 1223, 1434
MslI CAYNNNNRTG 2 cut(s) 417, 824
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 607, 1190
MunI CAATTG 1 cut(s) 124
MvaI CCWGG 2 cut(s) 607, 1190
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 2 cut(s) 353, 1067
NdeII GATC 2 cut(s) 349, 1048
NlaIV GGNNCC 3 cut(s) 12, 896, 1389
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 3 cut(s) 271, 470, 1252
PceI AGGCCT 1 cut(s) 153
PciI ACATGT 2 cut(s) 466, 1248
PdmI GAANNNNTTC 1 cut(s) 432
PfeI GAWTC 8 cut(s) 219, 485, 576, 646, 1148, 1319, 1355, 1374
PflMI CCANNNNNTGG 1 cut(s) 1195
PkrI GCNGC 7 cut(s) 6, 58, 61, 443, 748, 769, 789
Ppu21I YACGTR 2 cut(s) 559, 692
PscI ACATGT 2 cut(s) 466, 1248
Psp124BI GAGCTC 1 cut(s) 1032
Psp6I CCWGG 2 cut(s) 605, 1188
PspGI CCWGG 2 cut(s) 605, 1188
PspN4I GGNNCC 3 cut(s) 12, 896, 1389
PspPI GGNCC 2 cut(s) 10, 1504
PsrI GAACNNNNNNTAC 2 cut(s) 319, 351
RsaI GTAC 9 cut(s) 74, 399, 561, 690, 711, 1095, 1180, 1215, 1253
RsaNI GTAC 9 cut(s) 73, 398, 560, 689, 710, 1094, 1179, 1214, 1252
RseI CAYNNNNRTG 2 cut(s) 417, 824
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 2 cut(s) 1223, 1434
SatI GCNGC 7 cut(s) 5, 57, 60, 442, 747, 768, 788
Sau3AI GATC 2 cut(s) 349, 1048
Sau96I GGNCC 2 cut(s) 10, 1504
ScrFI CCNGG 2 cut(s) 607, 1190
SduI GDGCHC 2 cut(s) 897, 1032
SexAI ACCWGGT 1 cut(s) 1188
SfaNI GCATC 3 cut(s) 399, 668, 754
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 2 cut(s) 417, 824
SmlI CTYRAG 1 cut(s) 918
SmoI CTYRAG 1 cut(s) 918
SnaBI TACGTA 1 cut(s) 559
SpeI ACTAGT 1 cut(s) 1226
Sse9I AATT 8 cut(s) 42, 124, 672, 813, 869, 1104, 1140, 1466
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 3 cut(s) 56, 213, 1219
SspI AATATT 1 cut(s) 209
SspMI CTAG 2 cut(s) 1227, 1455
SstI GAGCTC 1 cut(s) 1032
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 605, 1188
StyI CCWWGG 1 cut(s) 1507
TaaI ACNGT 6 cut(s) 361, 416, 688, 1021, 1079, 1524
TaiI ACGT 7 cut(s) 136, 527, 561, 694, 964, 1003, 1347
TaqI TCGA 5 cut(s) 217, 295, 483, 574, 1377
TasI AATT 8 cut(s) 42, 124, 672, 813, 869, 1104, 1140, 1466
TatI WGTACW 4 cut(s) 709, 1178, 1213, 1251
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 8 cut(s) 219, 485, 576, 646, 1148, 1319, 1355, 1374
Tru1I TTAA 2 cut(s) 1223, 1434
Tru9I TTAA 2 cut(s) 1223, 1434
TscAI CASTG 3 cut(s) 457, 871, 1077
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 6 cut(s) 4, 59, 441, 746, 767, 787
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 7 cut(s) 114, 146, 382, 632, 715, 1152, 1353
TspGWI ACGGA 2 cut(s) 162, 517
TspRI CASTG 3 cut(s) 457, 871, 1077
Van91I CCANNNNNTGG 1 cut(s) 1195
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 962
XapI RAATTY 2 cut(s) 42, 869
XceI RCATGY 3 cut(s) 271, 470, 1252
XmiI GTMKAC 2 cut(s) 130, 423
XmnI GAANNNNTTC 1 cut(s) 432
XspI CTAG 2 cut(s) 1227, 1455
ZraI GACGTC 2 cut(s) 134, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.