Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

5142002 .. 5143188

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0059000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCAAGTTCGTACAAAAGACTTGGGGATGTACCATTGTTGTGATACTTGTAGTCTGGCCGTCGAGGCTGGGAATCCCCATATACTTTACACCTGTGGTGGCGATGACTTTGTTAGACAGTTTGATCTGCGAAGCAATTGTGCTAGAAGGCTACTCCAATGCTCCCCGACTGGCAAGAGGAAAGATCGGAGGTACTGATGTATATGCTCGTGTCTACGACATCCGAAAATTACAGCGGGGATATGCATCAAGTTATAAAGATGAACCTGTGGACATATTTTGCCCATACGACAGCTTGATTGAGATGGATTACACTATCATCACTGGGTTGGCTTACTCTAACTCCAGTGAACTACTTGAGAGTGTAGACCTCTGGGCTCCTAAGGCAAATGATGATCATCATGATCCACTGCCTGGCAACCTAGCACAGGTTTGTTTGTTTGTTTTTCAGATGCGCCTTGCCTTTCGAGATTCTGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

5.07

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccI	GTMKAC	2 cut(s)	216, 369
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	401
AcoI	YGGCCR	1 cut(s)	59
AfaI	GTAC	3 cut(s)	15, 34, 196
AfiI	CCNNNNNNNGG	2 cut(s)	416, 430
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
AlwI	GGATC	1 cut(s)	401
AoxI	GGCC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	459
AxyI	CCTNAGG	1 cut(s)	384
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BanII	GRGCYC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	210
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	397
BfaI	CTAG	2 cut(s)	146, 425
BglI	GCCNNNNNGGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	257, 444
BmuI	ACTGGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	2 cut(s)	247, 399
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 430
Bse1I	ACTGG	3 cut(s)	177, 331, 348
Bse21I	CCTNAGG	1 cut(s)	384
Bse8I	GATNNNNATC	2 cut(s)	247, 399
BseBI	CCWGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	35, 222
BseJI	GATNNNNATC	2 cut(s)	247, 399
BseLI	CCNNNNNNNGG	2 cut(s)	416, 430
BseNI	ACTGG	3 cut(s)	177, 331, 348
BseYI	CCCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	416, 430
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	126, 186, 397, 406
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	177, 331, 348
BssMI	GATC	4 cut(s)	126, 186, 397, 406
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	35, 222
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	4 cut(s)	129, 189, 400, 409
BstMBI	GATC	4 cut(s)	126, 186, 397, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 386
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	35, 222
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	3 cut(s)	324, 355, 410
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	459
Csp6I	GTAC	3 cut(s)	14, 33, 195
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	6 cut(s)	61, 70, 153, 297, 335, 380
CviKI_1	RGCY	6 cut(s)	61, 70, 153, 297, 335, 380
CviQI	GTAC	3 cut(s)	14, 33, 195
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	4 cut(s)	128, 188, 399, 408
DpnII	GATC	4 cut(s)	126, 186, 397, 406
EaeI	YGGCCR	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	382
FaeI	CATG	1 cut(s)	407
FaiI	YATR	9 cut(s)	83, 85, 205, 207, 246, 258, 278, 289, 405
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	231
FbaI	TGATCA	1 cut(s)	397
FblI	GTMKAC	2 cut(s)	216, 369
FokI	GGATG	2 cut(s)	42, 209
FriOI	GRGCYC	1 cut(s)	382
FspBI	CTAG	2 cut(s)	146, 425
GlaI	GCGC	1 cut(s)	458
GsaI	CCCAGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	75, 473
Hpy166II	GTNNAC	4 cut(s)	217, 274, 353, 370
Hpy188I	TCNGA	3 cut(s)	191, 227, 453
Hpy188III	TCNNGA	2 cut(s)	404, 470
Hpy8I	GTNNAC	4 cut(s)	217, 274, 353, 370
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 386
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	457
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	126, 186, 397, 406
LmnI	GCTCC	2 cut(s)	169, 385
LweI	GCATC	2 cut(s)	257, 444
MaeI	CTAG	2 cut(s)	146, 425
MalI	GATC	4 cut(s)	128, 188, 399, 408
MboI	GATC	4 cut(s)	126, 186, 397, 406
MfeI	CAATTG	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	2 cut(s)	138, 230
MnlI	CCTC	4 cut(s)	60, 173, 185, 383
Mph1103I	ATGCAT	1 cut(s)	250
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	67, 386
NdeII	GATC	4 cut(s)	126, 186, 397, 406
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	250
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	2 cut(s)	75, 473
PflMI	CCANNNNNTGG	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	381
RsaI	GTAC	3 cut(s)	15, 34, 196
RsaNI	GTAC	3 cut(s)	14, 33, 195
RseI	CAYNNNNRTG	1 cut(s)	41
Sau3AI	GATC	4 cut(s)	126, 186, 397, 406
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	7 cut(s)	97, 196, 271, 299, 375, 426, 435
SfaNI	GCATC	2 cut(s)	257, 444
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	138, 230
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	2 cut(s)	146, 425
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	65, 469
TasI	AATT	2 cut(s)	138, 230
TfiI	GAWTC	2 cut(s)	75, 473
TscAI	CASTG	3 cut(s)	331, 355, 417
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	331, 355, 417
Van91I	CCANNNNNTGG	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	216, 369
XspI	CTAG	2 cut(s)	146, 425
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.