Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

18230679 .. 18231875

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTTTTTTGTGTTTGATATTTTCTTTCGGTACTGGAGTGATGACGGAGTAATTTTTTGCCAGATGATTATTGCTATGCGAACAATGTATCAGAAGAGCAAACTGGTTTGGAGCTTATTTTACTTGATAATATGCTATGTTCTTGTGTCATCCCTTCCTTTTTGGCAGGGTCACTTGTACATTATCGACGTTTCTCAAGCAGTTGATTTGAACCACCCTCATGCCCTTGATTTCCTACGTGAAGATTGTGTCCATGTATCGGCATTTGGTGTTTTGAGCTTACCAAGCATTTGTCGGCATACAGGATTCTTCAGAAAACATGGTGTAGCTGTTATGACAATTCGCGAGCTCTTTGATTTTATAGTTGATCCAACAATTGCTGATGATGCGGACCATGCGGTGGAGGGTTATCTCGATATGGTACAACAAAGGGTCACGGCAAGAGGAGATATATCTGCAGAGGAGGAAATTGCAGACTCTGTATTTGTACAGTCATACATTCCGAAGACATTAGATGACGTGAAGAATGCTGAGCGGGATGTAATAAGGTCAACCACAGAGCAGTCTGAAAATCCTGAGACTGAATCCGACGCTGATACAGATGACGAGAACTCAAGTGACTCAGAAGGGCAGAGTTCCTCTTCCGAAACCAAGGCACAGGGTCCTCTCGAAAAGAAAGCTGCTAGAAAAGAGCACGAAAACAAAGTGAAAGAAGAGAAGAGGGAAGCTCGGAAAACTAAAGTGCCGAAGGCTCTGAAGAAACGAAAGAAAAAGATGGCCAAAGCACACAAGACCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

267

Amino Acids

30.48

Weight (kDa)

5.88

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccBSI	CCGCTC	1 cut(s)	535
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	389, 398, 535
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	777
AcuI	CTGAAG	2 cut(s)	295, 776
AfaI	GTAC	4 cut(s)	32, 179, 423, 489
AfiI	CCNNNNNNNGG	2 cut(s)	259, 400
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	794
AluBI	AGCT	6 cut(s)	114, 279, 329, 349, 680, 728
AluI	AGCT	6 cut(s)	114, 279, 329, 349, 680, 728
Alw21I	GWGCWC	2 cut(s)	351, 696
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	777
ApeKI	GCWGC	1 cut(s)	680
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspS9I	GGNCC	2 cut(s)	391, 662
AvaII	GGWCC	2 cut(s)	391, 662
BaeI	ACNNNNGTAYC	2 cut(s)	22, 55
BalI	TGGCCA	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	2 cut(s)	351, 696
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	1 cut(s)	769
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	1 cut(s)	681
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	796
Bme18I	GGWCC	2 cut(s)	391, 662
BmgBI	CACGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	391, 662
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	796
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
BpmI	CTGGAG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	180, 598
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 400
Bse1I	ACTGG	2 cut(s)	38, 108
BseBI	CCWGG	1 cut(s)	796
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	2 cut(s)	149, 544
BseLI	CCNNNNNNNGG	2 cut(s)	259, 400
BseMII	CTCAG	3 cut(s)	522, 567, 636
BseNI	ACTGG	2 cut(s)	38, 108
BseRI	GAGGAG	2 cut(s)	459, 476
BseXI	GCAGC	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	779
BsiHKAI	GWGCWC	2 cut(s)	351, 696
BslI	CCNNNNNNNGG	2 cut(s)	259, 400
BsmAI	GTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	351, 696
Bsp1407I	TGTACA	2 cut(s)	177, 487
Bsp143I	GATC	1 cut(s)	367
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp68I	TCGCGA	1 cut(s)	345
BspACI	CCGC	3 cut(s)	389, 398, 535
BspANI	GGCC	1 cut(s)	779
BspCNI	CTCAG	3 cut(s)	523, 568, 635
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	362
BspQI	GCTCTTC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	535
BsrGI	TGTACA	2 cut(s)	177, 487
BsrI	ACTGG	2 cut(s)	38, 108
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	4 cut(s)	89, 646, 708, 713
BstAUI	TGTACA	2 cut(s)	177, 487
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	3 cut(s)	531, 576, 622
BstF5I	GGATG	2 cut(s)	149, 544
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 386, 395
BstNI	CCWGG	1 cut(s)	796
BstSCI	CCNGG	1 cut(s)	794
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	779
BtrI	CACGTC	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	149, 544
BtuMI	TCGCGA	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	391, 662
CseI	GACGC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	794
Csp6I	GTAC	4 cut(s)	31, 178, 422, 488
CviAII	CATG	4 cut(s)	221, 254, 320, 395
CviJI	RGCY	8 cut(s)	114, 279, 329, 349, 680, 728, 752, 779
CviKI_1	RGCY	8 cut(s)	114, 279, 329, 349, 680, 728, 752, 779
CviQI	GTAC	4 cut(s)	31, 178, 422, 488
DdeI	CTNAG	3 cut(s)	531, 576, 622
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	4 cut(s)	89, 646, 708, 713
EarI	CTCTTC	4 cut(s)	89, 646, 708, 713
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	391, 662
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	295, 776
EcoICRI	GAGCTC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	224, 257, 323, 398
FatI	CATG	4 cut(s)	220, 253, 319, 394
FauI	CCCGC	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	2 cut(s)	136, 551
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	1 cut(s)	684
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	779
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	224, 257, 323, 398
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	4 cut(s)	306, 476, 584, 620
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	9 cut(s)	93, 314, 504, 568, 589, 625, 646, 732, 756
Hpy188III	TCNNGA	4 cut(s)	344, 413, 575, 668
Hpy8I	GTNNAC	1 cut(s)	552
Hpy99I	CGWCG	2 cut(s)	191, 593
HpyAV	CCTTC	3 cut(s)	164, 620, 742
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	3 cut(s)	189, 238, 519
HpyCH4V	TGCA	2 cut(s)	458, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 386, 395
HpyF3I	CTNAG	3 cut(s)	531, 576, 622
HpySE526I	ACGT	3 cut(s)	189, 238, 519
Hsp92II	CATG	4 cut(s)	224, 257, 323, 398
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	8 cut(s)	19, 74, 89, 152, 288, 588, 644, 781
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	1 cut(s)	794
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	3 cut(s)	189, 238, 519
MaeIII	GTNAC	3 cut(s)	170, 433, 617
MalI	GATC	1 cut(s)	369
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	1 cut(s)	367
MboII	GAAGA	9 cut(s)	106, 254, 301, 517, 535, 633, 725, 730, 769
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	351, 696
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	4 cut(s)	51, 339, 375, 468
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	2 cut(s)	470, 614
MmeI	TCCRAC	2 cut(s)	395, 612
MnlI	CCTC	8 cut(s)	228, 397, 437, 454, 457, 649, 675, 714
Mox20I	TGGCCA	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	779
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	779
MspR9I	CCNGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	796
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	285, 386, 395
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	224, 257, 323, 398
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	3 cut(s)	170, 433, 617
NruI	TCGCGA	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	306, 584
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	2 cut(s)	470, 614
PpsI	GAGTC	2 cut(s)	470, 614
Ppu21I	YACGTR	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	662
Psp124BI	GAGCTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	662
Psp6I	CCWGG	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	794
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	391, 662
PspPPI	RGGWCCY	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	479
RruI	TCGCGA	1 cut(s)	345
RsaI	GTAC	4 cut(s)	32, 179, 423, 489
RsaNI	GTAC	4 cut(s)	31, 178, 422, 488
RseI	CAYNNNNRTG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	2 cut(s)	391, 662
SchI	GAGTC	2 cut(s)	470, 614
ScrFI	CCNGG	1 cut(s)	796
SduI	GDGCHC	2 cut(s)	351, 696
SexAI	ACCWGGT	1 cut(s)	794
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	2 cut(s)	391, 662
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	195, 613
SmoI	CTYRAG	2 cut(s)	195, 613
Sse9I	AATT	4 cut(s)	51, 339, 375, 468
SsiI	CCGC	3 cut(s)	389, 398, 535
SspMI	CTAG	1 cut(s)	684
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	3 cut(s)	192, 241, 522
TaqI	TCGA	3 cut(s)	186, 414, 669
TasI	AATT	4 cut(s)	51, 339, 375, 468
TatI	WGTACW	2 cut(s)	177, 487
TfiI	GAWTC	2 cut(s)	306, 584
TseFI	GTSAC	3 cut(s)	170, 433, 617
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	3 cut(s)	170, 433, 617
TspGWI	ACGGA	1 cut(s)	60
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	391, 662
XspI	CTAG	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.