Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

71708950 .. 71709414

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG415200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCGGCCGCTATTGTTGATGAAAGATTAGGGCACGAAGAAAACGAAGTCTATGAGGATGAAGAAGATAAACTTTCATGGACGTCAGCCTCAAACATGAGCCAAGATGCATATGACAATTTGGACAATGACCAAGTACTCAAAGGCTGCTTCCCAATCAACTCTAGGCGTCCCAACGCTCATGGAGGCCTTCACTCTCTCCCCACTTCAACCCTTCAGCCTCTCTCTAATCGCCTCCAGAAGTTCGACGCTCGCATACGAGCTGGGCCTTTAGAGGAGTGGGAAGGCAGGTGGAATATGGACATGTCCAACTCTGTGATCACTTCCATTCGAGAGTTTGTTAGAGAAGGCCATTGGCAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

121

Amino Acids

13.9

Weight (kDa)

4.79

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	279
AatII	GACGTC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	279
AciI	CCGC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	2 cut(s)	83, 169
AfaI	GTAC	1 cut(s)	138
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	210
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AoxI	GGCC	4 cut(s)	6, 187, 266, 349
ApeKI	GCWGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	318
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	9, 148
BlsI	GCNGC	2 cut(s)	10, 149
BmcAI	AGTACT	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	266
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	221
BsaHI	GRCGYC	2 cut(s)	83, 169
Bse118I	RCCGGY	1 cut(s)	4
BseGI	GGATG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	36
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	8, 189, 268, 351
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	4 cut(s)	8, 189, 268, 351
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	4 cut(s)	8, 189, 268, 351
BspMI	ACCTGC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	83, 169
BstACI	GRCGYC	2 cut(s)	83, 169
BstC8I	GCNNGC	2 cut(s)	6, 253
BstF5I	GGATG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	307
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	8, 189, 268, 351
BtsCI	GGATG	1 cut(s)	64
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	6, 253
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	2 cut(s)	158, 257
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	4 cut(s)	78, 97, 182, 304
CviJI	RGCY	9 cut(s)	8, 89, 102, 147, 189, 220, 263, 268, 351
CviKI_1	RGCY	9 cut(s)	8, 89, 102, 147, 189, 220, 263, 268, 351
CviQI	GTAC	1 cut(s)	137
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	189
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	112
FaeI	CATG	4 cut(s)	81, 100, 185, 307
FaiI	YATR	9 cut(s)	54, 79, 98, 112, 114, 183, 257, 299, 305
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	4 cut(s)	77, 96, 181, 303
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	9, 148
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	9, 148
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	2 cut(s)	9, 148
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	8, 189, 268, 351
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	2 cut(s)	158, 257
Hin1I	GRCGYC	2 cut(s)	83, 169
Hin1II	CATG	4 cut(s)	81, 100, 185, 307
HpaII	CCGG	1 cut(s)	5
Hpy188III	TCNNGA	2 cut(s)	238, 332
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	200, 224, 278, 341
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	2 cut(s)	83, 169
Hsp92II	CATG	4 cut(s)	81, 100, 185, 307
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	318
LpnPI	CCDG	4 cut(s)	18, 249, 251, 274
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	83
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	3 cut(s)	50, 74, 77
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	6 cut(s)	49, 100, 179, 231, 245, 268
Mph1103I	ATGCAT	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
NaeI	GCCGGC	1 cut(s)	6
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	81, 100, 185, 307
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	307
PaqCI	CACCTGC	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	189
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	10, 149
PscI	ACATGT	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SatI	GCNGC	2 cut(s)	9, 148
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	3 cut(s)	86, 265, 293
SfaNI	GCATC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	118
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	189
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	246, 331
TasI	AATT	1 cut(s)	118
TatI	WGTACW	1 cut(s)	136
TauI	GCSGC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	3 cut(s)	36, 66, 75
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.