Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

44520283 .. 44521322

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTTCTTCACAGGTTTACTATGCCACCAAGTTTGACATTGAAAAACTTTGAAAATTTGGATCTTGGAAAGATTGATGAGACCAATGATTCTGGATTAGCATCATATGTTGCTGGACTATTTGCCCGCTCTCTCAGCTGGAAGGATGTGAAATGGCTTCAGTCAATCACTACATTACCAATTCTGTTAGAGGGCGTAATTACTGCTGAGGATACAAGGTTATGCATACAAGCTGGAGCTGCAGGAATAATTGTATCCAATCATGGAGCTCGGCAACTAGATTATGTCCCTGCAACTATTATGGCTTTGGAAGAGTGGGCGGTAAAGGATCGGAAATGGTATACCCAACAACAACTTGACGAGGTGCGCATTGAAGTAGCCGACTACTTACAGACTGCTGTAGATTCTGACCAGTTTCTTGATTTTGAGTTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

145

Amino Acids

16.35

Weight (kDa)

4.51

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FMN_dh	PF01070	5 - 106	2.5e-26	FMN-dependent dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	2 cut(s)	127, 320
AclWI	GGATC	2 cut(s)	69, 336
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	43, 53, 374
AluBI	AGCT	4 cut(s)	138, 233, 239, 269
AluI	AGCT	4 cut(s)	138, 233, 239, 269
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	69, 336
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	226
BciVI	GTATCC	2 cut(s)	205, 265
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	278, 436
BfmI	CTRYAG	2 cut(s)	240, 399
BfuI	GTATCC	2 cut(s)	205, 265
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	100
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	148, 198
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	61, 328
BspACI	CCGC	2 cut(s)	127, 320
BspCNI	CTCAG	2 cut(s)	147, 199
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	2 cut(s)	69, 336
BspTNI	GGTCTC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	61, 328
BssNAI	GTATAC	1 cut(s)	342
Bst1107I	GTATAC	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	134, 207
BstF5I	GGATG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	64, 331
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	61, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 239
BstSFI	CTRYAG	2 cut(s)	240, 399
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BstZ17I	GTATAC	1 cut(s)	342
BsuI	GTATCC	2 cut(s)	205, 265
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	7 cut(s)	138, 157, 233, 239, 269, 305, 380
CviKI_1	RGCY	7 cut(s)	138, 157, 233, 239, 269, 305, 380
DdeI	CTNAG	2 cut(s)	134, 207
DpnI	GATC	2 cut(s)	63, 330
DpnII	GATC	2 cut(s)	61, 328
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	1 cut(s)	266
FaiI	YATR	9 cut(s)	23, 106, 108, 223, 227, 264, 285, 302, 342
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	262
FauI	CCCGC	1 cut(s)	134
FauNDI	CATATG	1 cut(s)	106
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	240
FspAI	RTGCGCAY	1 cut(s)	368
FspBI	CTAG	2 cut(s)	278, 436
FspI	TGCGCA	1 cut(s)	368
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	89, 404
Hpy166II	GTNNAC	2 cut(s)	18, 342
Hpy188I	TCNGA	2 cut(s)	333, 409
Hpy188III	TCNNGA	2 cut(s)	93, 419
Hpy8I	GTNNAC	2 cut(s)	18, 342
HpyAV	CCTTC	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	225, 242, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 239
HpyF3I	CTNAG	2 cut(s)	134, 207
Hsp92II	CATG	1 cut(s)	266
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	61, 328
LmnI	GCTCC	2 cut(s)	236, 266
LpnPI	CCDG	7 cut(s)	78, 99, 124, 219, 228, 303, 425
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	2 cut(s)	278, 436
MalI	GATC	2 cut(s)	63, 330
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	2 cut(s)	61, 328
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	55, 180, 198, 249
MnlI	CCTC	3 cut(s)	184, 202, 355
Mph1103I	ATGCAT	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	135, 239
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	2 cut(s)	61, 328
NlaIII	CATG	1 cut(s)	266
NmeAIII	GCCGAG	1 cut(s)	250
NsbI	TGCGCA	1 cut(s)	368
NsiI	ATGCAT	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	89, 404
PkrI	GCNGC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	271
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	61, 328
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	7 cut(s)	17, 140, 221, 235, 241, 271, 366
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	240, 399
Sse9I	AATT	4 cut(s)	55, 180, 198, 249
SsiI	CCGC	2 cut(s)	127, 320
SspMI	CTAG	2 cut(s)	278, 436
SstI	GAGCTC	1 cut(s)	271
TasI	AATT	4 cut(s)	55, 180, 198, 249
TfiI	GAWTC	2 cut(s)	89, 404
TseI	GCWGC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	55
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	2 cut(s)	278, 436
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.