Rw7G009390

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
8816573 .. 8820255
3683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009390.1

Sequence Viewer

Length: 1212 bp
ATGGCTGCCGTTGAAGAGACAAAATCAGAGAAAGAGACTGAAGTGATTACTCCTGAAGCCGAAGAAGAAGAAGAAGTAGTAGTAGTCGAAGAGGATGAGGAAGAGGACTGGTCATCGGACTCGGACATCGGAGATGCATTGGACTATTTGGATTCCAAGGACGACGACGCAGTTGAAGGCGCCTTCACTATCAATTCGCGGCGCCCAAATGCCCATGGGGGCCTTCACTCTCACCCTAACTCCTCTACTCTTCAGCCTCTCTCTAATCGCAACCAGAGGTTCTCCACTCACATCCGAGCTTCGCCGTTAGAGGAGTGGGAAGGGAGGCATGTTGGGATGTCCAACTCTGTGACGACTGCGATTAGGGAAAGTGTTCGGGACATGGCCACTGGAAGAACAAAGACTACTGAGAAGGCGGATCGTGCCACTGTTGAGCAGGCTATTGATCCTAGAACTCGGATGGTGTTATTCAAAATGCTGAATCGCGGAGTGTTTAAGGATATCAATGGCTGCATTTCTACTGGGAAAGAAGCAAATGTTTATCATGCAACAAAAGCTGATGGCGGGGAACTGGCAATCAAAGTCTTCAAAACCTCTATTCTTGTTTTTAAGGATAGGGATAGATATGTACAAGGGGACTACAGGTTCAGACATGGATACTGCAAGCACAATCCTAGGAAAATGGTGAAGACATGGGCCGAGAAAGAAAAAAGGAATTTGATCAGGCTAAAGGCTGAAGGAATTAGGTGCCCAGAAGTAGGTCCTCTAAGACTTCATGTTCTGGTGATGGAATTCATAGGTAAGGATGGTTGGGCAGCGCCACGCCTAAAGGATGCTGCATTATCACTTGACAAGCTACGAGAAGGTTATATGGAGATGGTTATTGCTATGCGAACATTATATCAGAAGTGCAAACTGGTGCATGGTGATCTCAGTGAATACAACATACTTTATTTTGAGGGCCACTTGTATATCATCGATGTTTCTCAATCAGTTGATCTCGACCACCCTCATGCTCTTGATTTCCTACGTGAAGATTGTGTCCATGTATCCGATTTCTTCAAAAAACATGGTGTAGCTGTCATGACAATTCGAGAGCTCTTTGACTTTATAGTGGATCCATGTATTGCTGATGATGATATAGACAGTTATCTGGAGAAGGTTTGGTTCCTTTTGCTCTCTATTATGAATTCTTGGGCTCCTATTAGTTAG

Protein Analysis

403

Amino Acids

45.97

Weight (kDa)

5.34

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RIO1 PF01163 179 - 366 1.7e-70 RIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 179, 201, 747
AccII CGCG 2 cut(s) 199, 486
AciI CCGC 4 cut(s) 199, 416, 486, 564
AclWI GGATC 4 cut(s) 426, 440, 1112, 1125
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 3 cut(s) 715, 791, 1189
AcuI CTGAAG 4 cut(s) 60, 75, 236, 756
AcyI GRCGYC 2 cut(s) 180, 202
AfaI GTAC 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 758
AgsI TTSAA 5 cut(s) 14, 176, 472, 589, 1063
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 5 cut(s) 299, 557, 856, 1079, 1099
AluI AGCT 5 cut(s) 299, 557, 856, 1079, 1099
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 2 cut(s) 11, 29
AlwI GGATC 4 cut(s) 426, 440, 1112, 1125
AoxI GGCC 4 cut(s) 220, 384, 696, 961
ApeKI GCWGC 4 cut(s) 5, 510, 815, 836
ApoI RAATTY 3 cut(s) 715, 791, 1189
Asp700I GAANNNNTTC 1 cut(s) 372
AspA2I CCTAGG 1 cut(s) 674
AspLEI GCGC 3 cut(s) 182, 204, 820
AspS9I GGNCC 4 cut(s) 220, 696, 761, 961
AsuHPI GGTGA 4 cut(s) 224, 697, 796, 938
AvaII GGWCC 1 cut(s) 761
AvrII CCTAGG 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 752
BalI TGGCCA 1 cut(s) 386
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 3 cut(s) 179, 201, 747
BanII GRGCYC 2 cut(s) 1101, 1201
BbsI GAAGAC 2 cut(s) 577, 695
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 3 cut(s) 497, 823, 827
BccI CCATC 5 cut(s) 454, 554, 781, 800, 871
BceAI ACGGC 1 cut(s) 289
BciVI GTATCC 2 cut(s) 650, 1060
BclI TGATCA 1 cut(s) 720
BcoDI GTCTC 2 cut(s) 11, 29
BfaI CTAG 2 cut(s) 450, 675
BfmI CTRYAG 1 cut(s) 640
BfoI RGCGCY 3 cut(s) 183, 205, 821
BfuI GTATCC 2 cut(s) 650, 1060
BisI GCNGC 5 cut(s) 6, 200, 511, 816, 837
BlnI CCTAGG 1 cut(s) 674
BlsI GCNGC 5 cut(s) 7, 201, 512, 817, 838
Bme18I GGWCC 1 cut(s) 761
BmgT120I GGNCC 4 cut(s) 220, 696, 761, 961
BmiI GGNNCC 7 cut(s) 181, 203, 221, 749, 1119, 1169, 1200
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 2 cut(s) 124, 823
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 2 cut(s) 577, 695
BpmI CTGGAG 1 cut(s) 1175
Bsa29I ATCGAT 1 cut(s) 978
BsaAI YACGTR 1 cut(s) 1031
BsaHI GRCGYC 2 cut(s) 180, 202
BsaJI CCNNGG 3 cut(s) 156, 214, 674
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 5 cut(s) 113, 394, 526, 576, 921
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 3 cut(s) 156, 214, 674
BseGI GGATG 6 cut(s) 100, 291, 342, 465, 811, 838
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 399, 946
BseNI ACTGG 5 cut(s) 113, 394, 526, 576, 921
BseRI GAGGAG 2 cut(s) 232, 326
BseSI GKGCMC 1 cut(s) 752
BseXI GCAGC 3 cut(s) 497, 823, 827
Bsh1236I CGCG 2 cut(s) 199, 486
BshFI GGCC 4 cut(s) 222, 386, 698, 963
BshNI GGYRCC 3 cut(s) 179, 201, 747
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 1101
BslFI GGGAC 2 cut(s) 392, 650
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 11, 29
BsmFI GGGAC 2 cut(s) 392, 650
BsnI GGCC 4 cut(s) 222, 386, 698, 963
Bsp1286I GDGCHC 3 cut(s) 752, 1101, 1201
Bsp1407I TGTACA 1 cut(s) 628
Bsp143I GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 4 cut(s) 199, 416, 486, 564
BspANI GGCC 4 cut(s) 222, 386, 698, 963
BspCNI CTCAG 2 cut(s) 400, 945
BspDI ATCGAT 1 cut(s) 978
BspFNI CGCG 2 cut(s) 199, 486
BspHI TCATGA 1 cut(s) 1083
BspLI GGNNCC 7 cut(s) 181, 203, 221, 749, 1119, 1169, 1200
BspPI GGATC 4 cut(s) 426, 440, 1112, 1125
BspT107I GGYRCC 3 cut(s) 179, 201, 747
BsrGI TGTACA 1 cut(s) 628
BsrI ACTGG 5 cut(s) 113, 394, 526, 576, 921
BssECI CCNNGG 3 cut(s) 156, 214, 674
BssMI GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
BssNI GRCGYC 2 cut(s) 180, 202
BssT1I CCWWGG 3 cut(s) 156, 214, 674
Bst4CI ACNGT 2 cut(s) 430, 1148
Bst6I CTCTTC 4 cut(s) 9, 84, 96, 255
BstACI GRCGYC 2 cut(s) 180, 202
BstAUI TGTACA 1 cut(s) 628
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 2 cut(s) 438, 665
BstDEI CTNAG 3 cut(s) 408, 767, 932
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 6 cut(s) 100, 291, 342, 465, 811, 838
BstFNI CGCG 2 cut(s) 199, 486
BstH2I RGCGCY 3 cut(s) 183, 205, 821
BstHHI GCGC 3 cut(s) 182, 204, 820
BstKTI GATC 6 cut(s) 421, 448, 723, 931, 1000, 1120
BstMAI GTCTC 2 cut(s) 11, 29
BstMBI GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 422, 554
BstNSI RCATGY 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 752
BstUI CGCG 2 cut(s) 199, 486
BstV1I GCAGC 3 cut(s) 497, 823, 827
BstV2I GAAGAC 2 cut(s) 577, 695
BstX2I RGATCY 1 cut(s) 1117
BstYI RGATCY 1 cut(s) 1117
Bsu15I ATCGAT 1 cut(s) 978
BsuI GTATCC 2 cut(s) 650, 1060
BsuRI GGCC 4 cut(s) 222, 386, 698, 963
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 6 cut(s) 100, 291, 342, 465, 811, 838
BtsIMutI CAGTG 3 cut(s) 387, 426, 940
Cac8I GCNNGC 2 cut(s) 438, 665
CciI TCATGA 1 cut(s) 1083
CfoI GCGC 3 cut(s) 182, 204, 820
Cfr13I GGNCC 4 cut(s) 220, 696, 761, 961
ClaI ATCGAT 1 cut(s) 978
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 629
CviQI GTAC 1 cut(s) 629
DdeI CTNAG 3 cut(s) 408, 767, 932
DinI GGCGCC 2 cut(s) 181, 203
DpnI GATC 6 cut(s) 420, 447, 722, 930, 999, 1119
DpnII GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 4 cut(s) 9, 84, 96, 255
EarI CTCTTC 4 cut(s) 9, 84, 96, 255
EciI GGCGGA 1 cut(s) 431
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 3 cut(s) 156, 214, 674
Eco24I GRGCYC 2 cut(s) 1101, 1201
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 761
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 4 cut(s) 60, 75, 236, 756
EcoICRI GAGCTC 1 cut(s) 1099
EcoO109I RGGNCCY 2 cut(s) 220, 761
EcoRI GAATTC 2 cut(s) 791, 1189
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 3 cut(s) 156, 214, 674
EcoT22I ATGCAT 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 1101, 1201
EgeI GGCGCC 2 cut(s) 181, 203
EheI GGCGCC 2 cut(s) 181, 203
ErhI CCWWGG 3 cut(s) 156, 214, 674
FaqI GGGAC 2 cut(s) 392, 650
FauI CCCGC 1 cut(s) 557
FbaI TGATCA 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 6, 200, 511, 816, 837
FokI GGATG 6 cut(s) 107, 278, 349, 472, 818, 845
FriOI GRGCYC 2 cut(s) 1101, 1201
Fsp4HI GCNGC 5 cut(s) 6, 200, 511, 816, 837
FspBI CTAG 2 cut(s) 450, 675
GlaI GCGC 3 cut(s) 181, 203, 819
GluI GCNGC 5 cut(s) 6, 200, 511, 816, 837
GsuI CTGGAG 1 cut(s) 1175
HaeII RGCGCY 3 cut(s) 183, 205, 821
HaeIII GGCC 4 cut(s) 222, 386, 698, 963
HgaI GACGC 1 cut(s) 176
HhaI GCGC 3 cut(s) 182, 204, 820
Hin1I GRCGYC 2 cut(s) 180, 202
Hin6I GCGC 3 cut(s) 180, 202, 818
HinP1I GCGC 3 cut(s) 180, 202, 818
HinfI GANTC 3 cut(s) 119, 152, 481
HphI GGTGA 4 cut(s) 224, 697, 796, 938
Hpy188I TCNGA 9 cut(s) 28, 118, 124, 131, 296, 459, 650, 906, 1054
Hpy188III TCNNGA 7 cut(s) 53, 377, 1001, 1019, 1084, 1094, 1154
Hpy99I CGWCG 2 cut(s) 167, 170
HpyAV CCTTC 8 cut(s) 170, 193, 233, 314, 406, 731, 857, 1153
HpyCH4III ACNGT 2 cut(s) 430, 1148
HpyCH4IV ACGT 1 cut(s) 1030
HpyCH4V TGCA 7 cut(s) 137, 513, 548, 663, 839, 912, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 554
HpyF3I CTNAG 3 cut(s) 408, 767, 932
HpySE526I ACGT 1 cut(s) 1030
Hsp92I GRCGYC 2 cut(s) 180, 202
HspAI GCGC 3 cut(s) 180, 202, 818
KasI GGCGCC 2 cut(s) 179, 201
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
LmnI GCTCC 1 cut(s) 1204
Lsp1109I GCAGC 3 cut(s) 497, 823, 827
LweI GCATC 2 cut(s) 124, 823
MaeI CTAG 2 cut(s) 450, 675
MaeII ACGT 1 cut(s) 1030
MaeIII GTNAC 1 cut(s) 349
MalI GATC 6 cut(s) 420, 447, 722, 930, 999, 1119
MboI GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
MflI RGATCY 1 cut(s) 1117
MhlI GDGCHC 3 cut(s) 752, 1101, 1201
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 6 cut(s) 193, 715, 741, 791, 1089, 1189
MluNI TGGCCA 1 cut(s) 386
Mly113I GGCGCC 2 cut(s) 180, 202
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 366
Mox20I TGGCCA 1 cut(s) 386
Mph1103I ATGCAT 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 1 cut(s) 386
MseI TTAA 2 cut(s) 495, 609
MslI CAYNNNNRTG 1 cut(s) 1011
Msp20I TGGCCA 1 cut(s) 386
MvnI CGCG 2 cut(s) 199, 486
MwoI GCNNNNNNNGC 2 cut(s) 422, 554
NarI GGCGCC 2 cut(s) 180, 202
NcoI CCATGG 1 cut(s) 214
NdeII GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
NlaIV GGNNCC 7 cut(s) 181, 203, 221, 749, 1119, 1169, 1200
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 1 cut(s) 332
PagI TCATGA 1 cut(s) 1083
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 152, 481
PkrI GCNGC 5 cut(s) 7, 201, 512, 817, 838
PleI GAGTC 1 cut(s) 113
PluTI GGCGCC 2 cut(s) 183, 205
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 1031
PpuMI RGGWCCY 1 cut(s) 761
Psp124BI GAGCTC 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 761
PspN4I GGNNCC 7 cut(s) 181, 203, 221, 749, 1119, 1169, 1200
PspPI GGNCC 4 cut(s) 220, 696, 761, 961
PspPPI RGGWCCY 1 cut(s) 761
PsrI GAACNNNNNNTAC 2 cut(s) 388, 420
PsuI RGATCY 1 cut(s) 1117
RsaI GTAC 1 cut(s) 630
RsaNI GTAC 1 cut(s) 629
RseI CAYNNNNRTG 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 1101
SaqAI TTAA 2 cut(s) 495, 609
SatI GCNGC 5 cut(s) 6, 200, 511, 816, 837
Sau3AI GATC 6 cut(s) 418, 445, 720, 928, 997, 1117
Sau96I GGNCC 4 cut(s) 220, 696, 761, 961
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 3 cut(s) 752, 1101, 1201
SfaNI GCATC 2 cut(s) 124, 823
SfcI CTRYAG 1 cut(s) 640
SfoI GGCGCC 2 cut(s) 181, 203
SinI GGWCC 1 cut(s) 761
SmiMI CAYNNNNRTG 1 cut(s) 1011
Sse9I AATT 6 cut(s) 193, 715, 741, 791, 1089, 1189
SsiI CCGC 4 cut(s) 199, 416, 486, 564
SspDI GGCGCC 2 cut(s) 179, 201
SspMI CTAG 2 cut(s) 450, 675
SstI GAGCTC 1 cut(s) 1101
StyI CCWWGG 3 cut(s) 156, 214, 674
TaaI ACNGT 2 cut(s) 430, 1148
TaiI ACGT 1 cut(s) 1033
TaqI TCGA 4 cut(s) 87, 978, 1002, 1093
TasI AATT 6 cut(s) 193, 715, 741, 791, 1089, 1189
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 2 cut(s) 152, 481
Tru1I TTAA 2 cut(s) 495, 609
Tru9I TTAA 2 cut(s) 495, 609
TscAI CASTG 3 cut(s) 394, 433, 940
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 4 cut(s) 5, 510, 815, 836
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 764, 784, 1202
TspRI CASTG 3 cut(s) 394, 433, 940
VpaK11BI GGWCC 1 cut(s) 761
XapI RAATTY 3 cut(s) 715, 791, 1189
XceI RCATGY 1 cut(s) 332
XmaJI CCTAGG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 2 cut(s) 450, 675
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.