Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

21507949 .. 21508918

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGATGTTGCTGAGGAAGGATTAGAGAAGTCCCTTGAAGGAGAAGACGAACCGAACTTGGACTCATGCGGGGGCTGTAGGTGTGGCTGTTGCTGGTCACTACTATGGTCGTCATCGGACTCGGACACCCAACAAGATGTTGACTCTTTTGATTCCGAGGAGGACGATGATGAAGCCCTTAAAGCGTGTTTTCCAATCAACTATGCTAGCCAGCGACCCAATGCTCATGGAGGCCTACACTCTCGCCCTAATAACTCCAACCTTCGGCATTTCTCTAACCTCGTCGGACTTTCGCCTCTAGAGGGTTTTGATCTTACAACATCTTTGGCTATGCGGAAACTGCACAATCGCGGTGAATATGAGTATATCCATGGCTGCATTTCTACGGGGAAAGATGCAAATGTTTATTATGCAACAAGATCTGATGGCCAACAAGATGTGTATTACCCAACAAGATCTGGTGACCAGGACCTGGCTATCAAAGTGTACAAAACATCTGTTATGGATTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

172

Amino Acids

19.09

Weight (kDa)

4.52

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccII	CGCG	1 cut(s)	354
AciI	CCGC	3 cut(s)	72, 337, 354
AcoI	YGGCCR	1 cut(s)	430
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	267, 305, 475
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	468, 474
AlwNI	CAGNNNCTG	1 cut(s)	475
AoxI	GGCC	2 cut(s)	235, 430
ApeKI	GCWGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	368, 476
AsuNHI	GCTAGC	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	472
BalI	TGGCCA	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	54
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	2 cut(s)	470, 476
BfaI	CTAG	2 cut(s)	210, 302
BfmI	CTRYAG	1 cut(s)	79
BglII	AGATCT	2 cut(s)	422, 458
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	470, 476
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmrFI	CCNGG	2 cut(s)	470, 476
BmsI	GCATC	1 cut(s)	388
BmtI	GCTAGC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	159, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	267, 305, 475
BseBI	CCWGG	2 cut(s)	470, 476
BseDI	CCNNGG	2 cut(s)	159, 373
BseLI	CCNNNNNNNGG	3 cut(s)	267, 305, 475
BseMII	CTCAG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	354
BshFI	GGCC	2 cut(s)	237, 432
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	3 cut(s)	267, 305, 475
BsmFI	GGGAC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	237, 432
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	313, 422, 458
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	3 cut(s)	72, 337, 354
BspANI	GGCC	2 cut(s)	237, 432
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	354
BspOI	GCTAGC	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	159, 373
BssMI	GATC	3 cut(s)	313, 422, 458
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	470, 476
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	211, 215
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	373
BstEII	GGTNACC	1 cut(s)	464
BstFNI	CGCG	1 cut(s)	354
BstKTI	GATC	3 cut(s)	316, 425, 461
BstMBI	GATC	3 cut(s)	313, 422, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 185, 343
BstNI	CCWGG	2 cut(s)	470, 476
BstPI	GGTNACC	1 cut(s)	464
BstSCI	CCNGG	2 cut(s)	468, 474
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	422, 458
BstYI	RGATCY	2 cut(s)	422, 458
BsuRI	GGCC	2 cut(s)	237, 432
BtgI	CCRYGG	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	211, 215
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr13I	GGNCC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	3 cut(s)	69, 230, 374
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	315, 424, 460
DpnII	GATC	3 cut(s)	313, 422, 458
EaeI	YGGCCR	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	472
Eco91I	GGTNACC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	468, 474
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	72, 233, 377
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	3 cut(s)	68, 229, 373
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
FspBI	CTAG	2 cut(s)	210, 302
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	237, 432
Hin1II	CATG	3 cut(s)	72, 233, 377
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	65, 122, 146, 155
HphI	GGTGA	2 cut(s)	368, 476
Hpy166II	GTNNAC	2 cut(s)	145, 490
Hpy188I	TCNGA	5 cut(s)	121, 127, 160, 290, 427
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	2 cut(s)	145, 490
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	14, 35, 275
HpyCH4V	TGCA	4 cut(s)	346, 381, 401, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 185, 343
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	72, 233, 377
Kzo9I	GATC	3 cut(s)	313, 422, 458
LpnPI	CCDG	7 cut(s)	82, 227, 447, 455, 461, 482, 488
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	210, 302
MaeIII	GTNAC	2 cut(s)	99, 464
MalI	GATC	3 cut(s)	315, 424, 460
MboI	GATC	3 cut(s)	313, 422, 458
MboII	GAAGA	1 cut(s)	59
MflI	RGATCY	2 cut(s)	422, 458
MlsI	TGGCCA	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	3 cut(s)	59, 116, 140
MmeI	TCCRAC	2 cut(s)	268, 285
MnlI	CCTC	7 cut(s)	10, 154, 157, 227, 293, 298, 309
Mox20I	TGGCCA	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	2 cut(s)	183, 513
MslI	CAYNNNNRTG	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	470, 476
MvaI	CCWGG	2 cut(s)	470, 476
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	11, 185, 343
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	313, 422, 458
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	72, 233, 377
NmuCI	GTSAC	2 cut(s)	99, 464
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	380
PleI	GAGTC	3 cut(s)	59, 116, 140
PpsI	GAGTC	3 cut(s)	59, 116, 140
PpuMI	RGGWCCY	1 cut(s)	472
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	2 cut(s)	468, 474
PspEI	GGTNACC	1 cut(s)	464
PspGI	CCWGG	2 cut(s)	468, 474
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	2 cut(s)	422, 458
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	183, 513
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	3 cut(s)	313, 422, 458
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	3 cut(s)	59, 116, 140
ScrFI	CCNGG	2 cut(s)	470, 476
SetI	ASST	4 cut(s)	86, 267, 285, 477
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	106
SseBI	AGGCCT	1 cut(s)	237
SsiI	CCGC	3 cut(s)	72, 337, 354
SspMI	CTAG	2 cut(s)	210, 302
StuI	AGGCCT	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	468, 474
StyI	CCWWGG	1 cut(s)	373
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	183, 513
Tru9I	TTAA	2 cut(s)	183, 513
TseFI	GTSAC	2 cut(s)	99, 464
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	2 cut(s)	99, 464
TspDTI	ATGAA	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	2 cut(s)	210, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.