Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

71709920 .. 71711921

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG415300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGTGAAGGTATGGGTTGAGAAAGAAAAGAGGAATCTGGACAGGATGGTGAAAAATGGAATTAGATGTCCAACTGCAATTGATATAAAAGATCATGTTCTGGTCATGGAATTCATAGGGAAGACAGGTTGGCCAGCACCTCGTCTCAGGGATGCTGCACTGTCATTAGACAAGCTACGAAAAGGATATAGGGAGATGATTATTGCCATGCAGATGCTATATCAGAAGGCCAAACTGGTACATGCAGACCTCAGCGAATACAACATACTTTATTTTGAGGGCCACTTGTACATCATTGATGTTTCTCAAGCAGTTGAACCAGACCATGTTCATGTGAATGAATTCCTATGTCGAGATTGTGTCCATGTTTCTGATTTCTTTAAGAAAAAAGGTGTGGCAGTTATGACGATTCGTGAGCTCTTTGATTTTATAGTTGATCCATGTATTGCTGATGAGGCGGTGGACACTCATCTGGATGAGTCATTTATTCCAAGGACGCTAGAACATGTGAAGAATGTTGAGGCAGATGTAATACGGATAACTAGTGGTGAGGAGACTGCAGACATGTACTATAAAACTATTACAGGACTAGAGCAGGCACTTTCTACAGTCCAACAAGCTCCACCTGAGACCCAATCCGACTCTGATATTGATGAAGAGAACTCAAGTGACTTGGATTCCTCATCCGGAATCAGTACACAGGATCCACATGACAGGAAGGTTGCTGGAAAAGGTACAAGAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

249

Amino Acids

28.34

Weight (kDa)

5.31

Isoelectric Point (pI)

22.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	1 - 139	1.4e-49	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	686
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	3 cut(s)	431, 698, 711
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	110, 341
AfaI	GTAC	5 cut(s)	240, 290, 569, 697, 736
AflIII	ACRYGT	2 cut(s)	505, 564
AgsI	TTSAA	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	3 cut(s)	175, 418, 620
AluI	AGCT	3 cut(s)	175, 418, 620
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	3 cut(s)	149, 548, 623
AlwI	GGATC	3 cut(s)	431, 698, 711
Aor13HI	TCCGGA	1 cut(s)	686
AoxI	GGCC	3 cut(s)	131, 228, 280
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	2 cut(s)	110, 341
Asp700I	GAANNNNTTC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	16, 61, 560
BalI	TGGCCA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	149, 548, 623
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	3 cut(s)	500, 543, 590
BfmI	CTRYAG	2 cut(s)	558, 606
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	705
BmsI	GCATC	2 cut(s)	142, 204
BpiI	GAAGAC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	291, 649
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	4 cut(s)	51, 157, 481, 683
BseMII	CTCAG	3 cut(s)	160, 265, 618
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	133, 230, 282
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	687
BsmAI	GTCTC	3 cut(s)	149, 548, 623
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	133, 230, 282
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	686
Bsp1407I	TGTACA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	91, 436, 703
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	3 cut(s)	133, 230, 282
BspCNI	CTCAG	3 cut(s)	159, 264, 619
BspEI	TCCGGA	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	3 cut(s)	431, 698, 711
BspTNI	GGTCTC	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	3 cut(s)	91, 436, 703
BssT1I	CCWWGG	1 cut(s)	491
Bst4CI	ACNGT	2 cut(s)	162, 610
Bst6I	CTCTTC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	135, 597
BstDEI	CTNAG	3 cut(s)	146, 251, 627
BstF5I	GGATG	4 cut(s)	51, 157, 481, 683
BstKTI	GATC	3 cut(s)	94, 439, 706
BstMAI	GTCTC	3 cut(s)	149, 548, 623
BstMBI	GATC	3 cut(s)	91, 436, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNSI	RCATGY	3 cut(s)	245, 509, 568
BstSFI	CTRYAG	2 cut(s)	558, 606
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	133, 230, 282
BtsCI	GGATG	4 cut(s)	51, 157, 481, 683
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	135, 597
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	5 cut(s)	239, 289, 568, 696, 735
CviJI	RGCY	6 cut(s)	133, 175, 230, 282, 418, 620
CviKI_1	RGCY	6 cut(s)	133, 175, 230, 282, 418, 620
CviQI	GTAC	5 cut(s)	239, 289, 568, 696, 735
DdeI	CTNAG	3 cut(s)	146, 251, 627
DpnI	GATC	3 cut(s)	93, 438, 705
DpnII	GATC	3 cut(s)	91, 436, 703
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoRI	GAATTC	2 cut(s)	110, 341
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	491
Esp3I	CGTCTC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	4 cut(s)	58, 164, 488, 670
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	3 cut(s)	500, 543, 590
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	133, 230, 282
HapII	CCGG	1 cut(s)	687
HgaI	GACGC	1 cut(s)	505
HinfI	GANTC	6 cut(s)	34, 409, 479, 641, 677, 690
HpaII	CCGG	1 cut(s)	687
HphI	GGTGA	3 cut(s)	16, 61, 560
Hpy166II	GTNNAC	2 cut(s)	463, 698
Hpy188I	TCNGA	4 cut(s)	225, 373, 640, 646
Hpy188III	TCNNGA	5 cut(s)	38, 353, 413, 473, 687
Hpy8I	GTNNAC	2 cut(s)	463, 698
HpyAV	CCTTC	2 cut(s)	220, 712
HpyCH4III	ACNGT	2 cut(s)	162, 610
HpyCH4V	TGCA	5 cut(s)	77, 158, 211, 245, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	3 cut(s)	146, 251, 627
Kpn2I	TCCGGA	1 cut(s)	686
Kzo9I	GATC	3 cut(s)	91, 436, 703
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	142, 204
MaeI	CTAG	3 cut(s)	500, 543, 590
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	3 cut(s)	93, 438, 705
MboI	GATC	3 cut(s)	91, 436, 703
MboII	GAAGA	3 cut(s)	133, 523, 668
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	4 cut(s)	60, 78, 110, 341
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	488, 635
MmeI	TCCRAC	3 cut(s)	95, 637, 663
MnlI	CCTC	8 cut(s)	24, 150, 260, 271, 448, 514, 544, 691
Mox20I	TGGCCA	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	686
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	4 cut(s)	212, 330, 336, 474
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	3 cut(s)	91, 436, 703
NlaIV	GGNNCC	1 cut(s)	705
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	3 cut(s)	245, 509, 568
PciI	ACATGT	2 cut(s)	505, 564
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	34, 409, 677, 690
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	487, 635
PpsI	GAGTC	2 cut(s)	487, 635
PscI	ACATGT	2 cut(s)	505, 564
Psp124BI	GAGCTC	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	705
PspPI	GGNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	5 cut(s)	240, 290, 569, 697, 736
RsaNI	GTAC	5 cut(s)	239, 289, 568, 696, 735
RseI	CAYNNNNRTG	4 cut(s)	212, 330, 336, 474
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	91, 436, 703
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	488, 635
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	2 cut(s)	142, 204
SfcI	CTRYAG	2 cut(s)	558, 606
SmiMI	CAYNNNNRTG	4 cut(s)	212, 330, 336, 474
SmlI	CTYRAG	2 cut(s)	306, 664
SmoI	CTYRAG	2 cut(s)	306, 664
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	4 cut(s)	60, 78, 110, 341
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	3 cut(s)	500, 543, 590
SstI	GAGCTC	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	162, 610
TaqI	TCGA	1 cut(s)	352
TasI	AATT	4 cut(s)	60, 78, 110, 341
TatI	WGTACW	3 cut(s)	288, 567, 695
TfiI	GAWTC	4 cut(s)	34, 409, 677, 690
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	4 cut(s)	103, 320, 354, 669
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	110, 341
XceI	RCATGY	3 cut(s)	245, 509, 568
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	500, 543, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.