Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Forward (+)

16742528 .. 16743345

Gene Structure 818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25261.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACTCGTATTGGGCACCTGTACATCATTGATGTTTATCAAGCAGTTGAGATTTCCCACTCTGATGCCAATGAATTCCTATGTCAAGATTGTGTCCATGTTTCTGTGACACAGGCTTTCTTCAAAAAACGTGGTGTAGCAGTTATGACAGTCAGGGAGCTGTTTGATTTTAAAGTTGATCCAAGTATTGCTGAGGAAGCAGTGGACAGTTATTTGGATGAGACTTCGGCACGGCCGCTGATTCAAGTGGCTTTGATTTCAGGCATACATTCCAAGTACACTAAACCAGGTAATGATACGTTGAAGAAGATGTACTACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

5.72

Isoelectric Point (pI)

14.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	4 - 53	4.5e-08	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	3 cut(s)	23, 278, 314
AgsI	TTSAA	3 cut(s)	124, 245, 304
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	15
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 299
BbvCI	CCTCAGC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	55
Bpu10I	CCTNAGC	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	223
BseJI	GATNNNNATC	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	236
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	21
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	151, 209, 320
BstAUI	TGTACA	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	22, 277, 313
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	116, 160, 235, 251
CviKI_1	RGCY	4 cut(s)	116, 160, 235, 251
CviQI	GTAC	3 cut(s)	22, 277, 313
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	233
EagI	CGGCCG	1 cut(s)	233
EclXI	CGGCCG	1 cut(s)	233
Eco52I	CGGCCG	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	82, 99, 146, 266
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	2 cut(s)	4, 241
Hpy166II	GTNNAC	2 cut(s)	205, 279
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	205, 279
HpyCH4III	ACNGT	3 cut(s)	151, 209, 320
HpyCH4IV	ACGT	2 cut(s)	130, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	130, 299
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	32, 98, 139, 246, 273, 300
LweI	GCATC	1 cut(s)	55
MabI	ACCWGGT	1 cut(s)	286
MaeII	ACGT	2 cut(s)	130, 299
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	112, 316, 319
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	74
MnlI	CCTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	171, 322
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	17
RsaI	GTAC	3 cut(s)	23, 278, 314
RsaNI	GTAC	3 cut(s)	22, 277, 313
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	171, 322
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	5 cut(s)	21, 133, 162, 292, 302
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	151, 209, 320
TaiI	ACGT	2 cut(s)	133, 302
TasI	AATT	1 cut(s)	74
TatI	WGTACW	3 cut(s)	21, 276, 312
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	171, 322
Tru9I	TTAA	2 cut(s)	171, 322
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.