Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001382

Physical Location & Seq

Genomic Coordinates Reverse (-)

21505645 .. 21507193

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACATGGATTGTTGAATCTATTATAGGGAAGGCAGGTTGTGCAGCACCTCGTTTGAAGGATGCCACATTGTCATTACACGAGCTACGAGAAGGATATAGGGAGGGCCATTTGTACATGATTGATGTTTCTCAAGCAGTTGAGCTAAACGACCCTAGTGCGAATGGATTTCTATGTAAAGATTGTCTCTATGTCTCTGATTTCTTTAAAAAACATGGAGCAGCTGTTATGACAACACGGGAGCTCTTTGATTTTATTGTTGATCCATGTATTTTGGATGACATGGTGGACAGTTATCTGAATATGGTCCAATATAAAGTTGTGGCAAGGGGATCTATATCTGCAGAGGATGAAGTTGCAGACTCTGTGTTTGTGCAGTTATTTATTGCAAGTAGTTTAGAAAATTTGAAGAATGTTGAGGCGGATGCAATACAGATAACTAGTGATAAGGACACTGAAGAGATGGACTATAAAACTATTACTGCACTGGAGCAGGCACTTTCTAGAGTCCAACTAGCTCCACTTGAGACCAATTCTGATGAAGAAAACTCAAGCGATTTAGATTCCTCATCTGGAATCAAGGCACAGAACAAGAAGGTTGTGAGAAAATATTTCAAGAAGAAAGTCAAAGAAGTGAAGATGGAATCTCGGAAACATGAATTGCAAAAGCGCCCAAAGGCTGTAAAGAAAAGAAAGAAGAAGCTGTCGGAACCTTGCAGGACCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030684 GO:0030688 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:1901360 GO:1902494 GO:1990234 GO:1990904 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RIO1

Protein Analysis

242

Amino Acids

27.37

Weight (kDa)

6.47

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RIO1	PF01163	34 - 81	3.3e-10	RIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24990 AT5G37350 AT5G37350
fragaria_vesca	FvH4_5g08310 FvH4_5g08310 FvH4_5g08310 FvH4_5g16770 FvH4_5g16770 FvH4_5g16770 FvH4_5g25261
malus_domestica	MD06G1142000.v1.1 MD14G1157300.v1.1
prunus_persica	Prupe.5G151200_v2.0.a1
pyrus_communis	pycom06g13180 pycom14g13080
rosa_chinensis	RchiOBHm_Chr5g0020401 RchiOBHm_Chr5g0063241 RchiOBHm_Chr5g0063291 RchiOBHm_Chr7g0190211
rosa_laevigata	RLG00000004553 RLG00000032520 RLG00000035614 RLG00000035619
rosa_multiflora	Rmu_sc0000033.1_g000014 Rmu_sc0004886.1_g000019 Rmu_sc0005045.1_g000016
rosa_roxburghii	Rroxscaffold_1G00017410 Rroxscaffold_1G00017420 Rroxscaffold_1G00017470 Rroxscaffold_3G00264780
rosa_rugosa	Rorug05G0058900 Rorug05G0058900 Rorug05G0059000 Rorug05G0059100 Rorug05G0355500 Rorug06G0503000
rosa_samantha	Rh5AG149600 Rh5AG415200 Rh5AG415300 Rh5AG415500 Rh5BG149000 Rh5BG430400 Rh5CG160500 Rh5CG453800 Rh5DG147800 Rh5DG444000 Rh7AG108300 Rh7BG110900 Rh7CG113300 Rh7DG111700
rosa_wichuraiana	Rw5G013250 Rw5G039050 Rw7G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	257, 340
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	17, 58, 409, 616
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	6 cut(s)	85, 145, 224, 244, 518, 703
AluI	AGCT	6 cut(s)	85, 145, 224, 244, 518, 703
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	191, 199, 521
AlwI	GGATC	2 cut(s)	257, 340
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	44, 221
ApoI	RAATTY	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	3 cut(s)	106, 307, 720
AvaII	GGWCC	2 cut(s)	307, 720
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	56, 233
BccI	CCATC	2 cut(s)	457, 634
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BcoDI	GTCTC	3 cut(s)	191, 199, 521
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	4 cut(s)	156, 441, 504, 515
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	45, 222
BlsI	GCNGC	2 cut(s)	46, 223
Bme18I	GGWCC	2 cut(s)	307, 720
BmgT120I	GGNCC	3 cut(s)	106, 307, 720
BmiI	GGNNCC	1 cut(s)	711
BmsI	GCATC	2 cut(s)	52, 415
BpmI	CTGGAG	1 cut(s)	509
BpuEI	CTTGAG	3 cut(s)	117, 535, 545
BsaBI	GATNNNNATC	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	521
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse1I	ACTGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	337
BseGI	GGATG	4 cut(s)	67, 283, 355, 430
BseJI	GATNNNNATC	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	2 cut(s)	56, 233
BsgI	GTGCAG	3 cut(s)	63, 395, 468
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	246
BsmAI	GTCTC	3 cut(s)	191, 199, 521
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	262, 332
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	257, 340
BspTNI	GGTCTC	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	262, 332
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	495
BstF5I	GGATG	4 cut(s)	67, 283, 355, 430
BstH2I	RGCGCY	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	2 cut(s)	265, 335
BstMAI	GTCTC	3 cut(s)	191, 199, 521
BstMBI	GATC	2 cut(s)	262, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	56, 233
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	4 cut(s)	67, 283, 355, 430
BtsIMutI	CAGTG	2 cut(s)	453, 485
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	495
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	106, 307, 720
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	6, 118, 215, 267, 283, 656
CviJI	RGCY	8 cut(s)	85, 108, 145, 224, 244, 518, 680, 703
CviKI_1	RGCY	8 cut(s)	85, 108, 145, 224, 244, 518, 680, 703
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	264, 334
DpnII	GATC	2 cut(s)	262, 332
DraI	TTTAAA	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	2 cut(s)	307, 720
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	6 cut(s)	9, 121, 218, 270, 286, 659
FatI	CATG	6 cut(s)	5, 117, 214, 266, 282, 655
Fnu4HI	GCNGC	2 cut(s)	45, 222
FokI	GGATG	4 cut(s)	74, 290, 362, 437
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	45, 222
FspBI	CTAG	4 cut(s)	156, 441, 504, 515
GlaI	GCGC	1 cut(s)	671
GluI	GCNGC	2 cut(s)	45, 222
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	673
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	6 cut(s)	9, 121, 218, 270, 286, 659
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HinfI	GANTC	6 cut(s)	17, 362, 507, 563, 576, 644
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	199, 300, 538, 651, 709
Hpy188III	TCNNGA	3 cut(s)	504, 573, 616
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	4 cut(s)	25, 52, 86, 589
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4V	TGCA	9 cut(s)	44, 344, 359, 376, 389, 428, 485, 664, 717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	9, 121, 218, 270, 286, 659
HspAI	GCGC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	262, 332
LmnI	GCTCC	4 cut(s)	218, 241, 490, 523
LpnPI	CCDG	5 cut(s)	21, 473, 479, 558, 703
Lsp1109I	GCAGC	2 cut(s)	56, 233
LweI	GCATC	2 cut(s)	52, 415
MaeI	CTAG	4 cut(s)	156, 441, 504, 515
MalI	GATC	2 cut(s)	264, 334
MboI	GATC	2 cut(s)	262, 332
MboII	GAAGA	6 cut(s)	421, 470, 554, 631, 649, 709
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	403, 532, 659
MlyI	GAGTC	2 cut(s)	356, 516
MmeI	TCCRAC	2 cut(s)	535, 687
MnlI	CCTC	5 cut(s)	60, 97, 340, 412, 577
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	2 cut(s)	262, 332
NlaIII	CATG	6 cut(s)	9, 121, 218, 270, 286, 659
NlaIV	GGNNCC	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	17, 563, 576, 644
PkrI	GCNGC	2 cut(s)	46, 223
PleI	GAGTC	2 cut(s)	356, 515
PpsI	GAGTC	2 cut(s)	356, 515
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	3 cut(s)	106, 307, 720
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	45, 222
Sau3AI	GATC	2 cut(s)	262, 332
Sau96I	GGNCC	3 cut(s)	106, 307, 720
SchI	GAGTC	2 cut(s)	356, 516
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	52, 415
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	307, 720
SmlI	CTYRAG	3 cut(s)	132, 524, 550
SmoI	CTYRAG	3 cut(s)	132, 524, 550
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	3 cut(s)	403, 532, 659
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	4 cut(s)	156, 441, 504, 515
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	293
TasI	AATT	3 cut(s)	403, 532, 659
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	4 cut(s)	17, 563, 576, 644
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	2 cut(s)	460, 492
TseI	GCWGC	2 cut(s)	44, 221
TspDTI	ATGAA	3 cut(s)	366, 555, 672
TspRI	CASTG	2 cut(s)	460, 492
VpaK11BI	GGWCC	2 cut(s)	307, 720
XapI	RAATTY	1 cut(s)	403
XbaI	TCTAGA	1 cut(s)	503
XspI	CTAG	4 cut(s)	156, 441, 504, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.